Tableau information
Concept source: d1ytsa_ amino acid (a.a.) range (GLN304)(GLY324)
nSSEs in this Concept: 3
String of secondary struct.elems. (SSEs) defining this concept: EEE
Each SSE's a.a.range: (start resi) (end resi) SSEtype (H=Helix; E=Strand) followed by a numeric SSE ID:
(GLN304) (GLY309) E1
(THR312) (MET317) E2
(GLN319) (GLY324) E3
Orientation angles° of SSE-pairs; those in contact shown in bold font
E1
E2 163.6° E2
E3 113.5° -54.1°
Footnote: Inferred from this concept's usages (listed below) was the angular variance of 1σ = ±9.6° about each orientation angle shown above.
Loci of concept usages (shown as a range of a.a. residue ids) in SCOP(v2.05) domains, along with their brief legend taken from SCOP
d1mmfa_ : (SER506) (GLY527) [view usage] : c.1.19.3 |TIM beta/alpha-barrel |Cobalamin (vitamin B12)-dependent enzymes |Diol dehydratase, alpha subunit |Diol dehydratase, alpha subunit |Klebsiella pneumoniae [TaxId: 573]
d1zbra1 : (GLU264) (ASN284) [view usage] : d.126.1.6 |Pentein, beta/alpha-propeller |Pentein |Porphyromonas-type peptidylarginine deiminase |Putative peptidyl-arginine deiminase |Porphyromonas gingivalis [TaxId: 837]
d2w1va_ : (ASP155) (SER175) [view usage] : d.160.1.0 |Carbon-nitrogen hydrolase |Carbon-nitrogen hydrolase |automated matches |automated matches |Mouse (Mus musculus) [TaxId: 10090]
d3vehb_ : (VAL254) (ARG276) [view usage] : d.161.1.1 |ADC synthase |ADC synthase |ADC synthase |Salicylate synthase MbtI |Mycobacterium tuberculosis [TaxId: 1773]
d2tbvc_ : (VAL89) (SER119) [view usage] : b.121.4.7 |Nucleoplasmin-like/VP (viral coat and capsid proteins) |Positive stranded ssRNA viruses |Tombusviridae-like VP |Tombusvirus coat protein |TBSV (Tomato bushy stunt virus) [TaxId: 12145]
d1g7ca2 : (ARG421) (GLU443) [view usage] : b.44.1.1 |Elongation factor/aminomethyltransferase common domain |EF-Tu/eEF-1alpha/eIF2-gamma C-terminal domain |EF-Tu/eEF-1alpha/eIF2-gamma C-terminal domain |Elongation factor eEF-1alpha, C-terminal domain |Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
d1wcmg_ : (ARG58) (PRO81) [view usage] : i.8.1.1 |RNA polymerase |RNA polymerase |RNA polymerase |Complete 12-subunit RNA polymerase II complex |Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
d1f60a2 : (ARG421) (LYS441) [view usage] : b.44.1.1 |Elongation factor/aminomethyltransferase common domain |EF-Tu/eEF-1alpha/eIF2-gamma C-terminal domain |EF-Tu/eEF-1alpha/eIF2-gamma C-terminal domain |Elongation factor eEF-1alpha, C-terminal domain |Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
d1vk3a4 : (ARG587) (ARG603) [view usage] : d.139.1.1 |PurM C-terminal domain-like |PurM C-terminal domain-like |PurM C-terminal domain-like |Phosphoribosylformylglycinamidine synthase II, domains 2 and 4 |Thermotoga maritima [TaxId: 2336]
d1qx6a_ : (ILE156) (LYS174) [view usage] : b.100.1.1 |Sortase |Sortase |Sortase |Sortase B |Staphylococcus aureus [TaxId: 1280]
d1ovea_ : (PRO6) (ALA40) [view usage] : d.144.1.7 |Protein kinase-like (PK-like) |Protein kinase-like (PK-like) |Protein kinases, catalytic subunit |MAP kinase p38 |Human (Homo sapiens) [TaxId: 9606]
d3brgc2 : (THR453) (TYR470) [view usage] : b.1.18.0 |Immunoglobulin-like beta-sandwich |E set domains |automated matches |automated matches |Mouse (Mus musculus) [TaxId: 10090]
d1rota_ : (GLY21) (THR43) [view usage] : d.26.1.1 |FKBP-like |FKBP-like |FKBP immunophilin/proline isomerase |FKBP59-I, N-terminal domain |Rabbit (Oryctolagus cuniculus) [TaxId: 9986]
d1w7ha_ : (THR7) (ALA41) [view usage] : d.144.1.7 |Protein kinase-like (PK-like) |Protein kinase-like (PK-like) |Protein kinases, catalytic subunit |automated matches |Human (Homo sapiens) [TaxId: 9606]
d1xhxa2 : (ILE453) (SER487) [view usage] : e.8.1.1 |DNA/RNA polymerases |DNA/RNA polymerases |DNA polymerase I |phi29 DNA polymerase |Bacteriophage phi-29 [TaxId: 10756]
d2hg2a_ : (TYR122) (TRP152) [view usage] : c.82.1.0 |ALDH-like |ALDH-like |automated matches |automated matches |Escherichia coli [TaxId: 562]
d2nqmb2 : (GLY60) (ALA82) [view usage] : b.103.1.1 |MoeA N-terminal region -like |MoeA N-terminal region -like |MoeA N-terminal region -like |Molybdenum cofactor biosynthesis protein MoeA, N-terminal and linker domains |Escherichia coli [TaxId: 562]
d1wj9a1 : (ARG43) (PRO87) [view usage] : d.58.53.1 |Ferredoxin-like |CRISPR-associated protein |CRISPR-associated protein |Hypothetical protein TTHB192 |Thermus thermophilus [TaxId: 274]
d1r89a3 : (ARG366) (PHE382) [view usage] : d.58.16.2 |Ferredoxin-like |PAP/Archaeal CCA-adding enzyme, C-terminal domain |Archaeal tRNA CCA-adding enzyme |tRNA nucleotidyltransferase, C-terminal domain |Archaeoglobus fulgidus [TaxId: 2234]
d4ixla_ : (VAL182) (ILE200) [view usage] : b.29.1.11 |Concanavalin A-like lectins/glucanases |Concanavalin A-like lectins/glucanases |Xylanase/endoglucanase 11/12 |automated matches |Bacillus sp [TaxId: 1409]
d2rfwa_ : (PHE94) (LEU110) [view usage] : b.29.1.0 |Concanavalin A-like lectins/glucanases |Concanavalin A-like lectins/glucanases |automated matches |automated matches |Fungus (Melanocarpus albomyces) [TaxId: 204285]
d3vi3a1 : (ALA103) (LYS125) [view usage] : b.69.8.0 |7-bladed beta-propeller |Integrin alpha N-terminal domain |automated matches |automated matches |Human (Homo sapiens) [TaxId: 9606]
d4nmjf_ : (TYR124) (TRP154) [view usage] : c.82.1.0 |ALDH-like |ALDH-like |automated matches |automated matches |Pyrobaculum sp. [TaxId: 1104324]
d2eula2 : (SER87) (ASP121) [view usage] : d.26.1.2 |FKBP-like |FKBP-like |GreA transcript cleavage factor, C-terminal domain |GreA transcript cleavage factor, C-terminal domain |Thermus thermophilus [TaxId: 274]
d3hvma_ : (LYS258) (ASN279) [view usage] : d.126.1.6 |Pentein, beta/alpha-propeller |Pentein |Porphyromonas-type peptidylarginine deiminase |Putative peptidyl-arginine deiminase |Helicobacter pylori J99 [TaxId: 85963]
d1mila_ : (HIS84) (ARG102) [view usage] : d.93.1.1 |SH2-like |SH2 domain |SH2 domain |Shc adaptor protein |Human (Homo sapiens) [TaxId: 9606]
d3hu3a2 : (PHE152) (PRO170) [view usage] : d.31.1.0 |Cdc48 domain 2-like |Cdc48 domain 2-like |automated matches |automated matches |Human (Homo sapiens) [TaxId: 9606]
d2cmua1 : (LYS260) (ASN281) [view usage] : d.126.1.6 |Pentein, beta/alpha-propeller |Pentein |Porphyromonas-type peptidylarginine deiminase |Putative peptidyl-arginine deiminase |Helicobacter pylori J99 [TaxId: 85963]
d2i00c2 : (SER60) (HIS85) [view usage] : d.108.1.10 |Acyl-CoA N-acyltransferases (Nat) |Acyl-CoA N-acyltransferases (Nat) |EF1021-like |Putative acetyltransferase EF2353 |Enterococcus faecalis [TaxId: 1351]
d4um8a1 : (ALA96) (MET118) [view usage] : b.69.8.1 |7-bladed beta-propeller |Integrin alpha N-terminal domain |Integrin alpha N-terminal domain |automated matches |Human (Homo sapiens) [TaxId: 9606]
d4av4a_ : (ALA127) (VAL156) [view usage] : b.2.3.2 |Common fold of diphtheria toxin/transcription factors/cytochrome f |Bacterial adhesins |Pilus subunits |automated matches |Escherichia coli [TaxId: 364106]
d1k4ra_ : (VAL91) (TYR132) [view usage] : i.17.1.1 |Virus envelope proteins |Virus envelope proteins |Virus envelope proteins |Virus envelope proteins |Dengue virus [TaxId: 12637]
d1usvf_ : (VAL29) (LYS60) [view usage] : d.83.2.1 |Aha1/BPI domain-like |Activator of Hsp90 ATPase, Aha1 |Activator of Hsp90 ATPase, Aha1 |Activator of Hsp90 ATPase, Aha1 |Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
d1df3a_ : (GLU79) (ASP98) [view usage] : b.60.1.1 |Lipocalins |Lipocalins |Retinol binding protein-like |Major urinary protein/alpha-2u-globulin |Mouse (Mus musculus) [TaxId: 10090]
d4ktya1 : (ASP97) (ASP139) [view usage] : b.1.18.0 |Immunoglobulin-like beta-sandwich |E set domains |automated matches |automated matches |Human (Homo sapiens) [TaxId: 9606]
d2y8wa1 : (GLU42) (PRO87) [view usage] : d.58.53.0 |Ferredoxin-like |CRISPR-associated protein |automated matches |automated matches |Thermus thermophilus HB8 [TaxId: 300852]
d1af6a_ : (PRO125) (PHE155) [view usage] : f.4.3.2 |Transmembrane beta-barrels |Porins |Maltoporin-like |Maltoporin (also LamB protein) |Escherichia coli [TaxId: 562]
d2br7a_ : (VAL39) (TRP58) [view usage] : b.96.1.0 |Nicotinic receptor ligand binding domain-like |Nicotinic receptor ligand binding domain-like |automated matches |automated matches |California sea hare (Aplysia californica) [TaxId: 6500]
d1gydb_ : (LEU279) (THR296) [view usage] : b.67.2.1 |5-bladed beta-propeller |Arabinanase/levansucrase/invertase |alpha-L-arabinanase-like |alpha-L-arabinanase |Cellvibrio cellulosa [TaxId: 155077]
d4ndma1 : (THR9) (ILE29) [view usage] : b.1.1.0 |Immunoglobulin-like beta-sandwich |Immunoglobulin |automated matches |automated matches |Human (Homo sapiens) [TaxId: 9606]
d2jg7a_ : (ILE135) (THR163) [view usage] : c.82.1.0 |ALDH-like |ALDH-like |automated matches |automated matches |Acanthopagrus schlegeli [TaxId: 72011]
d3bzna_ : (PRO239) (PRO263) [view usage] : d.161.1.1 |ADC synthase |ADC synthase |ADC synthase |automated matches |Escherichia coli [TaxId: 562]
d2quxa_ : (ILE4) (ALA22) [view usage] : d.85.1.1 |RNA bacteriophage capsid protein |RNA bacteriophage capsid protein |RNA bacteriophage capsid protein |automated matches |Pseudomonas phage [TaxId: 12023]
d1ujxa_ : (GLY1) (PRO22) [view usage] : b.26.1.2 |SMAD/FHA domain |SMAD/FHA domain |FHA domain |Polynucleotide kinase 3'-phosphatase |Mouse (Mus musculus) [TaxId: 10090]
d2esla1 : (HIS88) (ALA137) [view usage] : b.62.1.1 |Cyclophilin-like |Cyclophilin-like |Cyclophilin (peptidylprolyl isomerase) |Cyclophilin (eukaryotic) |Human (Homo sapiens), variant C [TaxId: 9606]
d1ofha_ : (SER289) (ALA310) [view usage] : c.37.1.20 |P-loop containing nucleoside triphosphate hydrolases |P-loop containing nucleoside triphosphate hydrolases |Extended AAA-ATPase domain |HslU |Haemophilus influenzae [TaxId: 727]
d1r59o2 : (GLY260) (ILE295) [view usage] : c.55.1.4 |Ribonuclease H-like motif |Actin-like ATPase domain |Glycerol kinase |Glycerol kinase |Enterococcus casseliflavus [TaxId: 37734]
d3s3ea_ : (VAL164) (ALA182) [view usage] : c.45.1.0 |(Phosphotyrosine protein) phosphatases II |(Phosphotyrosine protein) phosphatases II |automated matches |automated matches |Fruit fly (Drosophila melanogaster) [TaxId: 7227]
d2g5fa1 : (VAL254) (ALA273) [view usage] : d.161.1.1 |ADC synthase |ADC synthase |ADC synthase |Salicylate synthase MbtI |Mycobacterium tuberculosis [TaxId: 1773]
d2keqa_ : (GLU91) (TYR110) [view usage] : b.86.1.0 |Hedgehog/intein (Hint) domain |Hedgehog/intein (Hint) domain |automated matches |automated matches |Nostoc punctiforme [TaxId: 63737]
d4fu4a1 : (GLY159) (PRO181) [view usage] : d.92.1.11 |Zincin-like |Metalloproteases ("zincins"), catalytic domain |Matrix metalloproteases, catalytic domain |Collagenase-3 (MMP-13) |Human (Homo sapiens) [TaxId: 9606]
d1wmra2 : (ARG477) (SER496) [view usage] : b.80.1.0 |Single-stranded right-handed beta-helix |Pectin lyase-like |automated matches |automated matches |Aspergillus niger [TaxId: 5061]
d2w40a2 : (GLU261) (ILE291) [view usage] : c.55.1.0 |Ribonuclease H-like motif |Actin-like ATPase domain |automated matches |automated matches |Plasmodium falciparum [TaxId: 36329]
d4wjka_ : (ALA103) (LYS125) [view usage] : b.69.8.0 |7-bladed beta-propeller |Integrin alpha N-terminal domain |automated matches |automated matches |Human (Homo sapiens) [TaxId: 9606]
d1l1ya_ : (TYR327) (PHE349) [view usage] : a.102.1.2 |alpha/alpha toroid |Six-hairpin glycosidases |Cellulases catalytic domain |Processive endocellulase CelF (Cel48F) |Clostridium thermocellum [TaxId: 1515]
d1svba2 : (VAL91) (TYR132) [view usage] : f.10.1.1 |Viral glycoprotein, central and dimerisation domains |Viral glycoprotein, central and dimerisation domains |Viral glycoprotein, central and dimerisation domains |Envelope glycoprotein |Tick-borne encephalitis virus [TaxId: 11084]
d1oana2 : (VAL91) (PRO132) [view usage] : f.10.1.1 |Viral glycoprotein, central and dimerisation domains |Viral glycoprotein, central and dimerisation domains |Viral glycoprotein, central and dimerisation domains |Envelope glycoprotein |Dengue virus type 2 [TaxId: 11060]
d1dwna_ : (THR3) (ALA22) [view usage] : d.85.1.1 |RNA bacteriophage capsid protein |RNA bacteriophage capsid protein |RNA bacteriophage capsid protein |PP7 coat protein |Bacteriophage PP7 [TaxId: 12023]
List of distinct SCOP folds where this concept is used (in one or more of its domains):
b.80, e.8, c.1, d.58, b.69, b.29, c.82, b.67, a.102, d.92, c.45, f.4, d.144, c.37, c.55, b.60, b.121, b.2, d.160, b.1,
d.126, d.108, b.96, b.62, b.26, d.139, d.85, d.93, i.8, d.26, i.17, b.44, d.83, b.100, d.161, d.31, f.10, b.86, b.103