Tableau information
Concept source: d2xyaa_ amino acid (a.a.) range (PRO111)(LEU136)
nSSEs in this Concept: 3
String of secondary struct.elems. (SSEs) defining this concept: EEE
Each SSE's a.a.range: (start resi) (end resi) SSEtype (H=Helix; E=Strand) followed by a numeric SSE ID:
(PRO111) (GLY117) E1
(GLY117) (LEU127) E2
(GLN131) (LEU136) E3
Orientation angles° of SSE-pairs; those in contact shown in bold font
E1
E2 82.2° E2
E3 -109.3° 154.6°
Footnote: Inferred from this concept's usages (listed below) was the angular variance of 1σ = ±10.9° about each orientation angle shown above.
Loci of concept usages (shown as a range of a.a. residue ids) in SCOP(v2.05) domains, along with their brief legend taken from SCOP
d4tgla_ : (GLY214) (CYS235) [view usage] : c.69.1.17 |alpha/beta-Hydrolases |alpha/beta-Hydrolases |Fungal lipases |Triacylglycerol lipase |Rhizomucor miehei [TaxId: 4839]
d4qxqa_ : (ARG191) (ASP210) [view usage] : d.387.1.1 |STING C-terminal-like |STING, TM173 CTD-like |Tyrosinase cofactor MelC1 |Tyrosinase cofactor MelC1 |Human (Homo sapiens) [TaxId: 9606]
d3osoa_ : (LEU7) (LEU38) [view usage] : b.40.1.1 |OB-fold |Staphylococcal nuclease |Staphylococcal nuclease |automated matches |Staphylococcus aureus [TaxId: 1280]
d4hatb_ : (LEU86) (GLY107) [view usage] : b.55.1.0 |PH domain-like barrel |PH domain-like |automated matches |automated matches |Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
d3ga3a_ : (LEU902) (THR932) [view usage] : b.88.2.1 |Mss4-like |RIG-I C-terminal-like |RIG-I C-terminal domain-like |automated matches |Human (Homo sapiens) [TaxId: 9606]
d4a4ia_ : (VAL27) (PHE63) [view usage] : b.40.4.0 |OB-fold |Nucleic acid-binding proteins |automated matches |automated matches |Human (Homo sapiens) [TaxId: 9606]
d3erqa_ : (LEU7) (LEU38) [view usage] : b.40.1.1 |OB-fold |Staphylococcal nuclease |Staphylococcal nuclease |Staphylococcal nuclease |Staphylococcus aureus [TaxId: 1280]
d2j00q1 : (LYS4) (LYS41) [view usage] : b.40.4.5 |OB-fold |Nucleic acid-binding proteins |Cold shock DNA-binding domain-like |Ribosomal protein S17 |Thermus thermophilus [TaxId: 274]
d1p6sa_ : (GLU3) (TYR26) [view usage] : b.55.1.1 |PH domain-like barrel |PH domain-like |Pleckstrin-homology domain (PH domain) |Rac-beta serine/threonine protein kinase (PKB/AKT) |Human (Homo sapiens) [TaxId: 9606]
d1hqna2 : (LEU281) (GLN308) [view usage] : b.121.2.1 |Nucleoplasmin-like/VP (viral coat and capsid proteins) |Group II dsDNA viruses VP |Coat protein p3 |Coat protein p3 |Bacteriophage PRD1 [TaxId: 10658]
d1s1hq_ : (LYS68) (ASN105) [view usage] : i.1.1.1 |Ribosome and ribosomal fragments |Ribosome and ribosomal fragments |Ribosome complexes |Eukaryotic, cytoplasmic (80S ribosome functional complex) |Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
d4qxpa_ : (ARG191) (ASN211) [view usage] : d.387.1.1 |STING C-terminal-like |STING, TM173 CTD-like |Tyrosinase cofactor MelC1 |Tyrosinase cofactor MelC1 |Human (Homo sapiens) [TaxId: 9606]
d1ttta2 : (PHE370) (LYS402) [view usage] : b.44.1.1 |Elongation factor/aminomethyltransferase common domain |EF-Tu/eEF-1alpha/eIF2-gamma C-terminal domain |EF-Tu/eEF-1alpha/eIF2-gamma C-terminal domain |Elongation factor Tu (EF-Tu) |Thermus aquaticus [TaxId: 271]
d1m7sb_ : (MET214) (TYR233) [view usage] : e.5.1.1 |Heme-dependent catalase-like |Heme-dependent catalase-like |Heme-dependent catalases |Catalase I |Pseudomonas syringae [TaxId: 317]
d1p9mc1 : (GLY164) (SER184) [view usage] : b.1.2.1 |Immunoglobulin-like beta-sandwich |Fibronectin type III |Fibronectin type III |Interleukin-6 receptor alpha chain, domains 2 and 3 |Human (Homo sapiens) [TaxId: 9606]
d4a76c_ : (GLN29) (PHE66) [view usage] : b.40.4.0 |OB-fold |Nucleic acid-binding proteins |automated matches |automated matches |Xenopus (Silurana) tropicalis [TaxId: 8364]
d4jhba_ : (GLU298) (ARG323) [view usage] : b.1.18.1 |Immunoglobulin-like beta-sandwich |E set domains |NF-kappa-B/REL/DORSAL transcription factors, C-terminal domain |automated matches |Mouse (Mus musculus) [TaxId: 10090]
d1slqc_ : (VAL366) (GLY382) [view usage] : f.47.1.1 |VP4 membrane interaction domain |VP4 membrane interaction domain |VP4 membrane interaction domain |VP4 membrane interaction domain |Rhesus rotavirus [TaxId: 10969]
d3brgc2 : (ASP360) (GLY401) [view usage] : b.1.18.0 |Immunoglobulin-like beta-sandwich |E set domains |automated matches |automated matches |Mouse (Mus musculus) [TaxId: 10090]
d3qb3a_ : (LEU7) (LEU38) [view usage] : b.40.1.1 |OB-fold |Staphylococcal nuclease |Staphylococcal nuclease |Staphylococcal nuclease |Staphylococcus aureus [TaxId: 1280]
d3d5aq1 : (LYS3) (LYS41) [view usage] : b.40.4.5 |OB-fold |Nucleic acid-binding proteins |Cold shock DNA-binding domain-like |Ribosomal protein S17 |Thermus thermophilus [TaxId: 274]
d4my6a_ : (SER2) (PRO25) [view usage] : b.55.1.0 |PH domain-like barrel |PH domain-like |automated matches |automated matches |Human (Homo sapiens) [TaxId: 9606]
d4fyra1 : (LYS126) (PRO148) [view usage] : b.98.1.0 |Zn aminopeptidase N-terminal domain |Zn aminopeptidase N-terminal domain |automated matches |automated matches |Human (Homo sapiens) [TaxId: 9606]
d2rfka2 : (GLY137) (ALA179) [view usage] : d.265.1.2 |Pseudouridine synthase |Pseudouridine synthase |Pseudouridine synthase II TruB |automated matches |Pyrococcus furiosus [TaxId: 2261]
d1mhda_ : (ILE65) (LEU83) [view usage] : d.164.1.1 |SMAD MH1 domain |SMAD MH1 domain |SMAD MH1 domain |SMAD MH1 domain |Human (Homo sapiens) [TaxId: 9606]
d1ilda_ : (ASN253) (ASN266) [view usage] : f.4.2.1 |Transmembrane beta-barrels |Outer membrane phospholipase A (OMPLA) |Outer membrane phospholipase A (OMPLA) |Outer membrane phospholipase A (OMPLA) |Escherichia coli [TaxId: 562]
d3j38e_ : (GLY144) (LYS174) [view usage] : i.1.1.1 |Ribosome and ribosomal fragments |Ribosome and ribosomal fragments |Ribosome complexes |Eukaryotic, cytoplasmic (80S ribosome functional complex) |Drosophila melanogaster [TaxId: 7227]
d1k28d1 : (GLY46) (ILE87) [view usage] : b.106.1.1 |Phage tail proteins |Phage tail proteins |Baseplate protein-like |Baseplate structural protein gp27 |Bacteriophage T4 [TaxId: 10665]
d1slqb_ : (VAL366) (GLY382) [view usage] : f.47.1.1 |VP4 membrane interaction domain |VP4 membrane interaction domain |VP4 membrane interaction domain |VP4 membrane interaction domain |Rhesus rotavirus [TaxId: 10969]
d2gy9q1 : (ARG5) (LYS42) [view usage] : b.40.4.5 |OB-fold |Nucleic acid-binding proteins |Cold shock DNA-binding domain-like |Ribosomal protein S17 |Escherichia coli [TaxId: 562]
d4akmb_ : (GLN352) (SER377) [view usage] : b.180.1.1 |Pseudo beta-prism II |LAMP conserved domain-like |LAMP conserved domain |DC-LAMP |Human (Homo sapiens) [TaxId: 9606]
d2p8va_ : (ILE12) (GLY34) [view usage] : b.55.1.4 |PH domain-like barrel |PH domain-like |Enabled/VASP homology 1 domain (EVH1 domain) |automated matches |Human (Homo sapiens) [TaxId: 9606]
d4akma_ : (GLN352) (SER377) [view usage] : b.180.1.1 |Pseudo beta-prism II |LAMP conserved domain-like |LAMP conserved domain |DC-LAMP |Human (Homo sapiens) [TaxId: 9606]
d1g8ma2 : (ASN371) (LYS390) [view usage] : c.97.1.4 |Cytidine deaminase-like |Cytidine deaminase-like |AICAR transformylase domain of bifunctional purine biosynthesis enzyme ATIC |AICAR transformylase domain of bifunctional purine biosynthesis enzyme ATIC |Chicken (Gallus gallus) [TaxId: 9031]
d1shya_ : (ASN497) (ARG514) [view usage] : b.47.1.2 |Trypsin-like serine proteases |Trypsin-like serine proteases |Eukaryotic proteases |Hepatocyte growth factor, HGF |Human (Homo sapiens) [TaxId: 9606]
d4a75c_ : (LEU31) (PHE66) [view usage] : b.40.4.0 |OB-fold |Nucleic acid-binding proteins |automated matches |automated matches |Xenopus (Silurana) tropicalis [TaxId: 8364]
d1ylxa1 : (GLU52) (LYS72) [view usage] : d.82.5.1 |N domain of copper amine oxidase-like |GK1464-like |GK1464-like |Hypothetical protein, GK1464 ortholog |Bacillus stearothermophilus [TaxId: 1422]
d2z0za_ : (MET1) (PRO17) [view usage] : d.108.1.0 |Acyl-CoA N-acyltransferases (Nat) |Acyl-CoA N-acyltransferases (Nat) |automated matches |automated matches |Thermus thermophilus HB8 [TaxId: 300852]
d4gmxb_ : (LEU86) (GLY107) [view usage] : b.55.1.0 |PH domain-like barrel |PH domain-like |automated matches |automated matches |Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
d1ee6a_ : (ALA1) (GLY19) [view usage] : b.80.1.1 |Single-stranded right-handed beta-helix |Pectin lyase-like |Pectate lyase-like |Pectate lyase |Bacillus sp., strain ksmp15 [TaxId: 1409]
d1snza_ : (GLU193) (PRO216) [view usage] : b.30.5.4 |Supersandwich |Galactose mutarotase-like |Aldose 1-epimerase (mutarotase) |Galactose mutarotase |Human (Homo sapiens) [TaxId: 9606]
d1ddwa_ : (ILE6) (SER28) [view usage] : b.55.1.4 |PH domain-like barrel |PH domain-like |Enabled/VASP homology 1 domain (EVH1 domain) |Homer |Norway rat (Rattus norvegicus) [TaxId: 10116]
d1aipa2 : (PHE370) (VAL399) [view usage] : b.44.1.1 |Elongation factor/aminomethyltransferase common domain |EF-Tu/eEF-1alpha/eIF2-gamma C-terminal domain |EF-Tu/eEF-1alpha/eIF2-gamma C-terminal domain |Elongation factor Tu (EF-Tu) |Thermus thermophilus [TaxId: 274]
d1nsxa_ : (HIS186) (LYS213) [view usage] : b.30.5.4 |Supersandwich |Galactose mutarotase-like |Aldose 1-epimerase (mutarotase) |Galactose mutarotase |Lactococcus lactis [TaxId: 1358]
d3i4ob_ : (GLU9) (LEU34) [view usage] : b.40.4.5 |OB-fold |Nucleic acid-binding proteins |Cold shock DNA-binding domain-like |automated matches |Mycobacterium tuberculosis [TaxId: 83332]
d1fjgq_ : (LYS4) (LYS41) [view usage] : b.40.4.5 |OB-fold |Nucleic acid-binding proteins |Cold shock DNA-binding domain-like |Ribosomal protein S17 |Thermus thermophilus [TaxId: 274]
d1vsai1 : (THR6) (ALA41) [view usage] : b.39.1.1 |Ribosomal protein L14 |Ribosomal protein L14 |Ribosomal protein L14 |Ribosomal protein L14 |Thermus thermophilus [TaxId: 274]
d1ddva_ : (ILE6) (SER28) [view usage] : b.55.1.4 |PH domain-like barrel |PH domain-like |Enabled/VASP homology 1 domain (EVH1 domain) |Homer |Norway rat (Rattus norvegicus) [TaxId: 10116]
d3j6vf_ : (GLY33) (TYR63) [view usage] : i.1.1.3 |Ribosome and ribosomal fragments |Ribosome and ribosomal fragments |Small subunit |Eukaryotic, mitochondrial (28S subunit) |Cow (Bos taurus) [TaxId: 9913]
d2rksa_ : (LEU7) (LEU36) [view usage] : b.40.1.1 |OB-fold |Staphylococcal nuclease |Staphylococcal nuclease |Staphylococcal nuclease |Staphylococcus aureus [TaxId: 1280]
d4a76a_ : (PRO28) (PHE66) [view usage] : b.40.4.0 |OB-fold |Nucleic acid-binding proteins |automated matches |automated matches |Xenopus (Silurana) tropicalis [TaxId: 8364]
d4wbsa_ : (SER29) (VAL47) [view usage] : c.37.1.0 |P-loop containing nucleoside triphosphate hydrolases |P-loop containing nucleoside triphosphate hydrolases |automated matches |automated matches |Burkholderia phymatum [TaxId: 391038]
d1sddb3 : (PRO1993) (GLY2019) [view usage] : b.18.1.2 |Galactose-binding domain-like |Galactose-binding domain-like |Discoidin domain (FA58C, coagulation factor 5/8 C-terminal domain) |C2 domain of factor V |Cow (Bos taurus) [TaxId: 9913]
d4ki5m_ : (LYS2236) (VAL2257) [view usage] : b.18.1.2 |Galactose-binding domain-like |Galactose-binding domain-like |Discoidin domain (FA58C, coagulation factor 5/8 C-terminal domain) |automated matches |Human (Homo sapiens) [TaxId: 9606]
d1af6a_ : (ASN201) (ASP237) [view usage] : f.4.3.2 |Transmembrane beta-barrels |Porins |Maltoporin-like |Maltoporin (also LamB protein) |Escherichia coli [TaxId: 562]
d4cava2 : (LYS449) (ALA467) [view usage] : d.108.1.0 |Acyl-CoA N-acyltransferases (Nat) |Acyl-CoA N-acyltransferases (Nat) |automated matches |automated matches |Aspergillus fumigatus [TaxId: 746128]
d2qjfb1 : (ASP374) (ASP391) [view usage] : b.122.1.0 |PUA domain-like |PUA domain-like |automated matches |automated matches |Human (Homo sapiens) [TaxId: 9606]
d1ttta1 : (VAL286) (HIS313) [view usage] : b.43.3.1 |Reductase/isomerase/elongation factor common domain |Translation proteins |Elongation factors |Elongation factor Tu (EF-Tu), domain 2 |Thermus aquaticus [TaxId: 271]
d1m9na2 : (ASN371) (LYS390) [view usage] : c.97.1.4 |Cytidine deaminase-like |Cytidine deaminase-like |AICAR transformylase domain of bifunctional purine biosynthesis enzyme ATIC |AICAR transformylase domain of bifunctional purine biosynthesis enzyme ATIC |Chicken (Gallus gallus) [TaxId: 9031]
d4bcua_ : (GLN152) (ALA195) [view usage] : b.121.7.1 |Nucleoplasmin-like/VP (viral coat and capsid proteins) |Satellite viruses |Satellite viruses |STNV coat protein |Satellite tobacco necrosis virus [TaxId: 12881]
d3h7ta_ : (GLY168) (SER205) [view usage] : b.47.1.0 |Trypsin-like serine proteases |Trypsin-like serine proteases |automated matches |automated matches |Sarcoptes scabiei [TaxId: 197185]
d2d9ya_ : (GLY7) (TRP32) [view usage] : b.55.1.0 |PH domain-like barrel |PH domain-like |automated matches |automated matches |Human (Homo sapiens) [TaxId: 9606]
d3syxa_ : (TYR14) (PRO33) [view usage] : b.55.1.4 |PH domain-like barrel |PH domain-like |Enabled/VASP homology 1 domain (EVH1 domain) |Sprouty-related, EVH1 domain-containing protein 1, Spred-1 |Human (Homo sapiens) [TaxId: 9606]
d1xkea1 : (LEU10) (GLY31) [view usage] : b.55.1.3 |PH domain-like barrel |PH domain-like |Ran-binding domain |Ran-binding protein 2 |Human (Homo sapiens) [TaxId: 9606]
d1l7ka_ : (HIS186) (LYS213) [view usage] : b.30.5.4 |Supersandwich |Galactose mutarotase-like |Aldose 1-epimerase (mutarotase) |Galactose mutarotase |Lactococcus lactis [TaxId: 1358]
d1gmwa1 : (ASP39) (ALA70) [view usage] : b.107.1.1 |Urease metallochaperone UreE, N-terminal domain |Urease metallochaperone UreE, N-terminal domain |Urease metallochaperone UreE, N-terminal domain |Urease metallochaperone UreE, N-terminal domain |Klebsiella aerogenes [TaxId: 28451]
d4m44a_ : (GLY288) (GLY309) [view usage] : b.19.1.2 |Viral protein domain |Viral protein domain |Influenza hemagglutinin headpiece |Hemagglutinin |Influenza b virus [TaxId: 416659]
d1im0a_ : (ASN253) (ASN266) [view usage] : f.4.2.1 |Transmembrane beta-barrels |Outer membrane phospholipase A (OMPLA) |Outer membrane phospholipase A (OMPLA) |Outer membrane phospholipase A (OMPLA) |Escherichia coli [TaxId: 562]
d1vtz0_ : (GLN152) (ALA195) [view usage] : b.121.7.1 |Nucleoplasmin-like/VP (viral coat and capsid proteins) |Satellite viruses |Satellite viruses |STNV coat protein |Satellite tobacco necrosis virus [TaxId: 12881]
d4f7xa_ : (LEU7) (LEU38) [view usage] : b.40.1.1 |OB-fold |Staphylococcal nuclease |Staphylococcal nuclease |Staphylococcal nuclease |Staphylococcus aureus [TaxId: 1280]
d2gqka_ : (GLU254) (GLN279) [view usage] : c.47.1.0 |Thioredoxin fold |Thioredoxin-like |automated matches |automated matches |Human (Homo sapiens) [TaxId: 9606]
d4ql5a_ : (ASP5) (GLY38) [view usage] : b.40.4.5 |OB-fold |Nucleic acid-binding proteins |Cold shock DNA-binding domain-like |automated matches |Streptococcus pneumoniae [TaxId: 170187]
d1vcla1 : (GLY11) (ASN56) [view usage] : b.42.2.1 |beta-Trefoil |Ricin B-like lectins |Ricin B-like |Hemolytic lectin CEL-III, domains 1 and 2 |Cucumaria echinata [TaxId: 40245]
d2h0ba_ : (THR413) (GLU447) [view usage] : b.29.1.4 |Concanavalin A-like lectins/glucanases |Concanavalin A-like lectins/glucanases |Laminin G-like module |Ligand-binding domain of neurexin 1beta |Cow (Bos taurus) [TaxId: 9913]
d1p4ra2 : (SER370) (LYS389) [view usage] : c.97.1.4 |Cytidine deaminase-like |Cytidine deaminase-like |AICAR transformylase domain of bifunctional purine biosynthesis enzyme ATIC |AICAR transformylase domain of bifunctional purine biosynthesis enzyme ATIC |Human (Homo sapiens) [TaxId: 9606]
d3r8ja_ : (PHE128) (ASP143) [view usage] : d.60.1.0 |Probable bacterial effector-binding domain |Probable bacterial effector-binding domain |automated matches |automated matches |Human (Homo sapiens) [TaxId: 9606]
d4fsla_ : (THR107) (GLU127) [view usage] : b.50.1.2 |Acid proteases |Acid proteases |Pepsin-like |beta-secretase (memapsin) |Human (Homo sapiens) [TaxId: 9606]
d1vbla_ : (GLN227) (SER244) [view usage] : b.80.1.0 |Single-stranded right-handed beta-helix |Pectin lyase-like |automated matches |automated matches |Bacillus sp. [TaxId: 132676]
d1edyb_ : (ILE102) (ALA130) [view usage] : b.1.29.1 |Immunoglobulin-like beta-sandwich |Macroglobulin |Alpha-macroglobulin receptor domain |alpha-1-macroglobulin |Norway rat (Rattus norvegicus) [TaxId: 10116]
d1sa3a_ : (GLU192) (ASN221) [view usage] : c.52.1.23 |Restriction endonuclease-like |Restriction endonuclease-like |Restriction endonuclease MspI |Restriction endonuclease MspI |Moraxella sp. [TaxId: 479]
d1oana2 : (LYS47) (GLU62) [view usage] : f.10.1.1 |Viral glycoprotein, central and dimerisation domains |Viral glycoprotein, central and dimerisation domains |Viral glycoprotein, central and dimerisation domains |Envelope glycoprotein |Dengue virus type 2 [TaxId: 11060]
d1kfqa1 : (TYR167) (VAL202) [view usage] : c.84.1.1 |Phosphoglucomutase, first 3 domains |Phosphoglucomutase, first 3 domains |Phosphoglucomutase, first 3 domains |Exocytosis-sensitive phosphoprotein, pp63/parafusin |Ciliate (Paramecium tetraurelia) [TaxId: 5888]
List of distinct SCOP folds where this concept is used (in one or more of its domains):
b.80, e.5, b.19, c.69, i.1, b.29, b.30, b.47, b.50, f.4, b.40, c.37, c.47, b.18, b.121, b.122, b.1, d.108, c.97, b.42,
b.55, c.52, b.43, b.88, f.47, d.82, b.98, d.265, b.44, c.84, b.106, f.10, d.60, d.387, b.180, b.107, d.164, b.39