Tableau information
Concept source: d1pt1b_ amino acid (a.a.) range (TYR58)(THR92)
nSSEs in this Concept: 3
String of secondary struct.elems. (SSEs) defining this concept: EEE
Each SSE's a.a.range: (start resi) (end resi) SSEtype (H=Helix; E=Strand) followed by a numeric SSE ID:
(TYR58) (GLU63) E1
(ARG67) (VAL71) E2
(ILE84) (THR92) E3
Orientation angles° of SSE-pairs; those in contact shown in bold font
E1
E2 146.5° E2
E3 -118.5° 80.5°
Footnote: Inferred from this concept's usages (listed below) was the angular variance of 1σ = ±12.4° about each orientation angle shown above.
Loci of concept usages (shown as a range of a.a. residue ids) in SCOP(v2.05) domains, along with their brief legend taken from SCOP
d4nz2a_ : (THR470) (PRO489) [view usage] : a.104.1.1 |Cytochrome P450 |Cytochrome P450 |Cytochrome P450 |Mammalian cytochrome p450 2c9 |Human (Homo sapiens) [TaxId: 9606]
d2jnea1 : (GLN42) (LEU70) [view usage] : g.41.18.1 |Rubredoxin-like |YfgJ-like |YfgJ-like |Hypothetical protein YfgJ |Escherichia coli [TaxId: 562]
d2we2a2 : (PRO122) (PRO146) [view usage] : b.85.4.1 |beta-clip |dUTPase-like |dUTPase-like |automated matches |Human herpesvirus 4 [TaxId: 10377]
d1ddga1 : (SER242) (TRP279) [view usage] : b.43.4.1 |Reductase/isomerase/elongation factor common domain |Riboflavin synthase domain-like |NADPH-cytochrome p450 reductase FAD-binding domain-like |Sulfite reductase flavoprotein |Escherichia coli [TaxId: 562]
d1fjgl_ : (VAL83) (GLU127) [view usage] : b.40.4.5 |OB-fold |Nucleic acid-binding proteins |Cold shock DNA-binding domain-like |Ribosomal protein S12 |Thermus thermophilus [TaxId: 274]
d1glva1 : (LEU43) (GLN61) [view usage] : c.30.1.3 |PreATP-grasp domain |PreATP-grasp domain |Prokaryotic glutathione synthetase, N-terminal domain |Prokaryotic glutathione synthetase, N-terminal domain |Escherichia coli [TaxId: 562]
d2gsye_ : (SER110) (THR128) [view usage] : b.121.4.9 |Nucleoplasmin-like/VP (viral coat and capsid proteins) |Positive stranded ssRNA viruses |Birnaviridae-like VP |automated matches |Infectious bursal disease virus [TaxId: 10995]
d3c9xa_ : (PRO178) (GLY200) [view usage] : b.50.1.0 |Acid proteases |Acid proteases |automated matches |automated matches |Trichoderma reesei [TaxId: 51453]
d1fj3a_ : (THR6) (THR34) [view usage] : d.92.1.2 |Zincin-like |Metalloproteases ("zincins"), catalytic domain |Thermolysin-like |Thermolysin |Bacillus thermoproteolyticus [TaxId: 1427]
d1r5ba1 : (SER522) (SER549) [view usage] : b.43.3.1 |Reductase/isomerase/elongation factor common domain |Translation proteins |Elongation factors |Eukaryotic peptide chain release factor ERF2, post-G domain |Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]
d1sf9a_ : (GLU84) (GLY107) [view usage] : b.34.15.1 |SH3-like barrel |Hypothetical protein YfhH |Hypothetical protein YfhH |Hypothetical protein YfhH |Bacillus subtilis [TaxId: 1423]
d2ywwb2 : (ARG121) (GLU149) [view usage] : g.41.7.0 |Rubredoxin-like |Aspartate carbamoyltransferase, Regulatory-chain, C-terminal domain |automated matches |automated matches |Methanocaldococcus jannaschii [TaxId: 2190]
d1biha2 : (VAL180) (SER207) [view usage] : b.1.1.4 |Immunoglobulin-like beta-sandwich |Immunoglobulin |I set domains |Hemolin |Moth (Hyalophora cecropia) [TaxId: 7123]
d1ns4a_ : (HIS170) (LYS199) [view usage] : b.30.5.4 |Supersandwich |Galactose mutarotase-like |Aldose 1-epimerase (mutarotase) |Galactose mutarotase |Lactococcus lactis [TaxId: 1358]
d2j7qa1 : (THR84) (GLY111) [view usage] : d.3.1.20 |Cysteine proteinases |Cysteine proteinases |M48USP-like |Tegument protein M48; N-terminal domain |Murine cytomegalovirus (MCMV) [TaxId: 10366]
d1hwwa2 : (GLN866) (THR915) [view usage] : b.30.5.6 |Supersandwich |Galactose mutarotase-like |alpha-mannosidase, C-terminal domain |Golgi alpha-mannosidase II |Fruit fly (Drosophila melanogaster) [TaxId: 7227]
d3b07b_ : (ILE100) (VAL146) [view usage] : f.6.1.1 |Leukocidin-like |Leukocidin-like |Leukocidin (pore-forming toxin) |automated matches |Staphylococcus aureus [TaxId: 158878]
d3cmbd_ : (PRO58) (LYS92) [view usage] : d.347.1.1 |Acetoacetate decarboxylase-like |Acetoacetate decarboxylase-like |Acetoacetate decarboxylase-like |Acetoacetate decarboxylase |Methanoculleus marisnigri [TaxId: 2198]
d1pxza_ : (TRP69) (ALA87) [view usage] : b.80.1.1 |Single-stranded right-handed beta-helix |Pectin lyase-like |Pectate lyase-like |Major pollen allergen Jun a 1 |Ozark white cedar (Juniperus ashei) [TaxId: 13101]
d1tdba_ : (THR275) (PRO313) [view usage] : d.117.1.1 |Thymidylate synthase/dCMP hydroxymethylase |Thymidylate synthase/dCMP hydroxymethylase |Thymidylate synthase/dCMP hydroxymethylase |Thymidylate synthase |Lactobacillus casei [TaxId: 1582]
d1bg1a2 : (ASN390) (GLU415) [view usage] : b.2.5.5 |Common fold of diphtheria toxin/transcription factors/cytochrome f |p53-like transcription factors |STAT DNA-binding domain |STAT3b |Mouse (Mus musculus) [TaxId: 10090]
d2d4na_ : (LEU113) (PRO135) [view usage] : b.85.4.0 |beta-clip |dUTPase-like |automated matches |automated matches |Mason-pfizer monkey virus [TaxId: 11855]
d2ecza_ : (LEU35) (SER65) [view usage] : b.34.2.0 |SH3-like barrel |SH3-domain |automated matches |automated matches |Human (Homo sapiens) [TaxId: 9606]
d4hvya_ : (SER107) (GLY126) [view usage] : d.113.1.0 |Nudix |Nudix |automated matches |automated matches |Human (Homo sapiens) [TaxId: 9606]
d2crva_ : (SER71) (TYR99) [view usage] : b.43.3.0 |Reductase/isomerase/elongation factor common domain |Translation proteins |automated matches |automated matches |Mouse (Mus musculus) [TaxId: 10090]
d1g4wr2 : (GLY302) (PHE338) [view usage] : c.45.1.2 |(Phosphotyrosine protein) phosphatases II |(Phosphotyrosine protein) phosphatases II |Higher-molecular-weight phosphotyrosine protein phosphatases |SptP tyrosine phosphatase, catalytic domain |Salmonella typhimurium [TaxId: 90371]
d2hgsa1 : (GLU244) (ASP268) [view usage] : c.30.1.4 |PreATP-grasp domain |PreATP-grasp domain |Eukaryotic glutathione synthetase, substrate-binding domain |Eukaryotic glutathione synthetase, substrate-binding domain |Human (Homo sapiens) [TaxId: 9606]
d2y6tf_ : (SER47) (GLY82) [view usage] : b.16.1.1 |Ecotin, trypsin inhibitor |Ecotin, trypsin inhibitor |Ecotin, trypsin inhibitor |automated matches |Yersinia pseudotuberculosis [TaxId: 502800]
d3tbja_ : (GLN221) (LYS258) [view usage] : d.124.1.0 |Ribonuclease Rh-like |Ribonuclease Rh-like |automated matches |automated matches |Aspergillus niger [TaxId: 5061]
d1h8ga_ : (GLY240) (GLY260) [view usage] : b.109.1.1 |beta-hairpin stack |Cell wall binding repeat |Cell wall binding repeat |Choline binding domain of autolysin C-LytA |Pneumococcus (Streptococcus pneumoniae) [TaxId: 1313]
d1k4ra_ : (GLY28) (ASN52) [view usage] : i.17.1.1 |Virus envelope proteins |Virus envelope proteins |Virus envelope proteins |Virus envelope proteins |Dengue virus [TaxId: 12637]
d2boya_ : (GLY147) (ASN172) [view usage] : b.3.6.0 |Prealbumin-like |Aromatic compound dioxygenase |automated matches |automated matches |Rhodococcus opacus [TaxId: 37919]
d1sqra_ : (VAL58) (VAL87) [view usage] : b.43.3.3 |Reductase/isomerase/elongation factor common domain |Translation proteins |Ribosomal protein L35ae |Ribosomal protein L35ae |Pyrococcus furiosus [TaxId: 2261]
d2fiba_ : (GLY352) (PRO388) [view usage] : d.171.1.1 |Fibrinogen C-terminal domain-like |Fibrinogen C-terminal domain-like |Fibrinogen C-terminal domain-like |Fibrinogen C-terminal domains |Human (Homo sapiens), gamma [TaxId: 9606]
d3tmea_ : (GLU10) (LEU38) [view usage] : b.40.1.1 |OB-fold |Staphylococcal nuclease |Staphylococcal nuclease |Staphylococcal nuclease |Staphylococcus aureus [TaxId: 1280]
d3d5be1 : (ASN169) (GLU200) [view usage] : b.43.3.2 |Reductase/isomerase/elongation factor common domain |Translation proteins |Ribosomal protein L3 |Ribosomal protein L3 |Thermus thermophilus [TaxId: 274]
d2f1aa2 : (GLN866) (SER916) [view usage] : b.30.5.6 |Supersandwich |Galactose mutarotase-like |alpha-mannosidase, C-terminal domain |Golgi alpha-mannosidase II |Fruit fly (Drosophila melanogaster) [TaxId: 7227]
d1ttua3 : (ILE516) (SER540) [view usage] : b.42.7.1 |beta-Trefoil |DNA-binding protein LAG-1 (CSL) |DNA-binding protein LAG-1 (CSL) |DNA-binding protein LAG-1 (CSL) |Nematode (Caenorhabditis elegans) [TaxId: 6239]
d2fv5b_ : (LYS367) (THR387) [view usage] : d.92.1.10 |Zincin-like |Metalloproteases ("zincins"), catalytic domain |TNF-alpha converting enzyme, TACE, catalytic domain |TNF-alpha converting enzyme, TACE, catalytic domain |Human (Homo sapiens) [TaxId: 9606]
d1mkfa_ : (THR191) (PRO216) [view usage] : b.116.1.1 |Viral chemokine binding protein m3 |Viral chemokine binding protein m3 |Viral chemokine binding protein m3 |Viral chemokine binding protein m3 |Murid herpesvirus 4, MuHV-4 [TaxId: 33708]
d4i6ba_ : (ARG71) (GLU98) [view usage] : d.144.1.0 |Protein kinase-like (PK-like) |Protein kinase-like (PK-like) |automated matches |automated matches |Human (Homo sapiens) [TaxId: 9606]
d1yovc_ : (PRO149) (ILE172) [view usage] : c.111.1.2 |Activating enzymes of the ubiquitin-like proteins |Activating enzymes of the ubiquitin-like proteins |Ubiquitin activating enzymes (UBA) |Amyloid beta precursor protein-binding protein 1, APPBP1 |Human (Homo sapiens) [TaxId: 9606]
d1ja1a1 : (THR287) (TYR323) [view usage] : b.43.4.1 |Reductase/isomerase/elongation factor common domain |Riboflavin synthase domain-like |NADPH-cytochrome p450 reductase FAD-binding domain-like |NADPH-cytochrome p450 reductase |Norway rat (Rattus norvegicus) [TaxId: 10116]
d1exma1 : (GLN278) (LYS306) [view usage] : b.43.3.1 |Reductase/isomerase/elongation factor common domain |Translation proteins |Elongation factors |Elongation factor Tu (EF-Tu), domain 2 |Thermus thermophilus [TaxId: 274]
d1htya2 : (GLN866) (THR915) [view usage] : b.30.5.6 |Supersandwich |Galactose mutarotase-like |alpha-mannosidase, C-terminal domain |Golgi alpha-mannosidase II |Fruit fly (Drosophila melanogaster) [TaxId: 7227]
d1w6sa_ : (MET422) (PRO440) [view usage] : b.70.1.1 |8-bladed beta-propeller |Quinoprotein alcohol dehydrogenase-like |Quinoprotein alcohol dehydrogenase-like |Methanol dehydrogenase, heavy chain |Methylobacterium extorquens [TaxId: 408]
d3c60a1 : (CYS89) (PRO111) [view usage] : b.1.1.0 |Immunoglobulin-like beta-sandwich |Immunoglobulin |automated matches |automated matches |Mouse (Mus musculus) [TaxId: 10090]
d1cx1a_ : (GLY57) (PRO76) [view usage] : b.18.1.14 |Galactose-binding domain-like |Galactose-binding domain-like |CBM4/9 |Cellulose-binding domain of cellulase C |Cellulomonas fimi [TaxId: 1708]
d1smoa_ : (ILE115) (VAL133) [view usage] : b.1.1.1 |Immunoglobulin-like beta-sandwich |Immunoglobulin |V set domains (antibody variable domain-like) |TREM-1 (triggering receptor expressed on myeloid cells 1) |Human (Homo sapiens) [TaxId: 9606]
d3d3za_ : (GLN198) (LYS235) [view usage] : d.124.1.0 |Ribonuclease Rh-like |Ribonuclease Rh-like |automated matches |automated matches |Aspergillus niger [TaxId: 5061]
d1lqya_ : (PHE90) (LEU104) [view usage] : d.167.1.1 |Peptide deformylase |Peptide deformylase |Peptide deformylase |Peptide deformylase |Bacillus stearothermophilus [TaxId: 1422]
d1ogya1 : (ARG756) (GLU800) [view usage] : b.52.2.2 |Double psi beta-barrel |ADC-like |Formate dehydrogenase/DMSO reductase, C-terminal domain |Periplasmic nitrate reductase alpha chain, NapA |Rhodobacter sphaeroides [TaxId: 1063]
d1g0va_ : (GLY177) (GLY200) [view usage] : b.50.1.2 |Acid proteases |Acid proteases |Pepsin-like |Acid protease |Baker's yeast (Saccharomyces cerevisiae), proteinase A [TaxId: 4932]
d1dlma_ : (ARG180) (CYS202) [view usage] : b.3.6.1 |Prealbumin-like |Aromatic compound dioxygenase |Aromatic compound dioxygenase |Catechol 1,2-dioxygenase |Acinetobacter calcoaceticus [TaxId: 471]
d2okla_ : (PHE90) (LEU104) [view usage] : d.167.1.1 |Peptide deformylase |Peptide deformylase |Peptide deformylase |automated matches |Bacillus cereus [TaxId: 226900]
d4j52a_ : (GLU42) (GLU69) [view usage] : d.144.1.0 |Protein kinase-like (PK-like) |Protein kinase-like (PK-like) |automated matches |automated matches |Human (Homo sapiens) [TaxId: 9606]
d1tvga_ : (PHE38) (GLU60) [view usage] : b.18.1.9 |Galactose-binding domain-like |Galactose-binding domain-like |APC10-like |Placental protein 25, pp25 |Human (Homo sapiens) [TaxId: 9606]
d1svba2 : (GLY28) (ASN52) [view usage] : f.10.1.1 |Viral glycoprotein, central and dimerisation domains |Viral glycoprotein, central and dimerisation domains |Viral glycoprotein, central and dimerisation domains |Envelope glycoprotein |Tick-borne encephalitis virus [TaxId: 11084]
d1flga_ : (VAL442) (ARG459) [view usage] : b.70.1.1 |8-bladed beta-propeller |Quinoprotein alcohol dehydrogenase-like |Quinoprotein alcohol dehydrogenase-like |Ethanol dehydrogenase |Pseudomonas aeruginosa [TaxId: 287]
d4g9uc_ : (LYS266) (MET303) [view usage] : d.117.1.1 |Thymidylate synthase/dCMP hydroxymethylase |Thymidylate synthase/dCMP hydroxymethylase |Thymidylate synthase/dCMP hydroxymethylase |automated matches |Trichinella spiralis [TaxId: 6334]
List of distinct SCOP folds where this concept is used (in one or more of its domains):
b.80, b.70, a.104, b.30, d.117, d.92, c.45, b.50, d.144, b.40, d.171, b.18, b.121, d.3, b.2, b.85, b.1, d.347, b.42, d.124,
b.52, c.111, d.167, b.34, b.109, c.30, b.43, b.3, d.113, i.17, g.41, b.16, f.6, f.10, b.116