Tableau information
Concept source: d4dkya_ amino acid (a.a.) range (GLU51)(PRO73)
nSSEs in this Concept: 3
String of secondary struct.elems. (SSEs) defining this concept: EEE
Each SSE's a.a.range: (start resi) (end resi) SSEtype (H=Helix; E=Strand) followed by a numeric SSE ID:
(GLU51) (ALA57) E1
(ARG58) (ASN62) E2
(GLU67) (PRO73) E3
Orientation angles° of SSE-pairs; those in contact shown in bold font
E1
E2 -73.7° E2
E3 -135.1° 142.9°
Footnote: Inferred from this concept's usages (listed below) was the angular variance of 1σ = ±10.4° about each orientation angle shown above.
Loci of concept usages (shown as a range of a.a. residue ids) in SCOP(v2.05) domains, along with their brief legend taken from SCOP
d2fqma1 : (ASP107) (LEU126) [view usage] : d.378.1.1 |Phosphoprotein oligomerization domain-like |Phosphoprotein oligomerization domain-like |Phosphoprotein oligomerization domain-like |Phosphoprotein P (M1) |Vesicular stomatitis indiana virus [TaxId: 11277]
d2dl2a2 : (THR170) (VAL199) [view usage] : b.1.1.4 |Immunoglobulin-like beta-sandwich |Immunoglobulin |I set domains |Killer cell inhibitory receptor |Human (Homo sapiens), 2dl2 [TaxId: 9606]
d1lmia_ : (SER60) (TRP82) [view usage] : b.1.19.1 |Immunoglobulin-like beta-sandwich |Antigen MPT63/MPB63 (immunoprotective extracellular protein) |Antigen MPT63/MPB63 (immunoprotective extracellular protein) |Antigen MPT63/MPB63 (immunoprotective extracellular protein) |Mycobacterium tuberculosis [TaxId: 1773]
d4ntwb_ : (GLY18) (GLN40) [view usage] : g.8.1.0 |BPTI-like |BPTI-like |automated matches |automated matches |Micrurus tener [TaxId: 1114302]
d1nova_ : (SER187) (ILE215) [view usage] : b.121.4.4 |Nucleoplasmin-like/VP (viral coat and capsid proteins) |Positive stranded ssRNA viruses |Nodaviridae-like VP |Alphanodavirus capsid protein |Nodamura virus [TaxId: 12288]
d3bsda_ : (GLU94) (SER114) [view usage] : b.75.1.1 |Bacteriochlorophyll A protein |Bacteriochlorophyll A protein |Bacteriochlorophyll A protein |automated matches |Chlorobaculum tepidum [TaxId: 1097]
d1zt2b1 : (LEU115) (PHE138) [view usage] : a.262.1.1 |PriB N-terminal domain-like |PriB N-terminal domain-like |PriB N-terminal domain-like |DNA primase large subunit PriB, N-terminal domain |Sulfolobus solfataricus [TaxId: 2287]
d2pu9b_ : (ARG6) (GLN29) [view usage] : b.34.4.3 |SH3-like barrel |Electron transport accessory proteins |Ferredoxin thioredoxin reductase (FTR), alpha (variable) chain |Ferredoxin thioredoxin reductase (FTR), alpha (variable) chain |Synechocystis sp. [TaxId: 1143]
d3u5io_ : (VAL2) (GLN27) [view usage] : i.1.1.1 |Ribosome and ribosomal fragments |Ribosome and ribosomal fragments |Ribosome complexes |Eukaryotic, cytoplasmic (80S ribosome functional complex) |Saccharomyces cerevisiae [TaxId: 559292]
d3zvjf_ : (PRO10) (CYS26) [view usage] : c.47.1.0 |Thioredoxin fold |Thioredoxin-like |automated matches |automated matches |Blood fluke (Schistosoma mansoni) [TaxId: 6183]
d1t5la1 : (TYR95) (LYS111) [view usage] : c.37.1.19 |P-loop containing nucleoside triphosphate hydrolases |P-loop containing nucleoside triphosphate hydrolases |Tandem AAA-ATPase domain |Nucleotide excision repair enzyme UvrB |Bacillus caldotenax [TaxId: 1395]
d1i5pa2 : (VAL374) (GLN394) [view usage] : b.77.2.1 |beta-Prism I |delta-Endotoxin (insectocide), middle domain |delta-Endotoxin (insectocide), middle domain |delta-Endotoxin (insectocide), middle domain |Bacillus thuringiensis subsp. kurstaki, CRY2AA [TaxId: 29339]
d1stma_ : (ARG53) (LEU76) [view usage] : b.121.7.1 |Nucleoplasmin-like/VP (viral coat and capsid proteins) |Satellite viruses |Satellite viruses |SPMV coat protein |Satellite panicum mosaic virus [TaxId: 154834]
d1pxza_ : (GLY125) (ALA147) [view usage] : b.80.1.1 |Single-stranded right-handed beta-helix |Pectin lyase-like |Pectate lyase-like |Major pollen allergen Jun a 1 |Ozark white cedar (Juniperus ashei) [TaxId: 13101]
d3n3ka_ : (VAL1028) (LEU1053) [view usage] : d.3.1.9 |Cysteine proteinases |Cysteine proteinases |Ubiquitin carboxyl-terminal hydrolase, UCH |Ubiquitin carboxyl-terminal hydrolase 8 |Human (Homo sapiens) [TaxId: 9606]
d2jd4b2 : (GLN3035) (HIS3053) [view usage] : b.29.1.0 |Concanavalin A-like lectins/glucanases |Concanavalin A-like lectins/glucanases |automated matches |automated matches |Mouse (Mus musculus) [TaxId: 10090]
d2qhca_ : (GLY40) (ARG57) [view usage] : b.50.1.1 |Acid proteases |Acid proteases |Retroviral protease (retropepsin) |Human immunodeficiency virus type 1 protease |Human immunodeficiency virus type 1 [TaxId: 11676]
d1mvma_ : (THR44) (MET75) [view usage] : b.121.5.2 |Nucleoplasmin-like/VP (viral coat and capsid proteins) |ssDNA viruses |Parvoviridae-like VP |Parvovirus (panleukopenia virus) capsid protein |Murine minute virus, strain i [TaxId: 10794]
d1gxda6 : (GLY317) (SER333) [view usage] : g.14.1.2 |Kringle-like |Kringle-like |Fibronectin type II module |Gelatinase A (MMP-2) type II modules |Human (Homo sapiens) [TaxId: 9606]
d2pcea1 : (THR4) (HIS29) [view usage] : d.54.1.0 |Enolase N-terminal domain-like |Enolase N-terminal domain-like |automated matches |automated matches |Roseovarius nubinhibens [TaxId: 89187]
d1l7la_ : (ILE26) (GLY43) [view usage] : b.18.1.16 |Galactose-binding domain-like |Galactose-binding domain-like |PA-IL, galactose-binding lectin 1 |PA-IL, galactose-binding lectin 1 |Pseudomonas aeruginosa [TaxId: 287]
d1t45a_ : (PHE600) (THR619) [view usage] : d.144.1.7 |Protein kinase-like (PK-like) |Protein kinase-like (PK-like) |Protein kinases, catalytic subunit |c-KIT receptor |Human (Homo sapiens) [TaxId: 9606]
d1ck7a5 : (ALA347) (SER362) [view usage] : g.14.1.2 |Kringle-like |Kringle-like |Fibronectin type II module |Gelatinase A (MMP-2) type II modules |Human (Homo sapiens) [TaxId: 9606]
d2y9na_ : (TYR130) (PRO172) [view usage] : b.29.1.10 |Concanavalin A-like lectins/glucanases |Concanavalin A-like lectins/glucanases |Glycosyl hydrolase family 7 catalytic core |automated matches |Hypocrea lixii [TaxId: 5544]
d1dpfa_ : (THR37) (THR60) [view usage] : c.37.1.8 |P-loop containing nucleoside triphosphate hydrolases |P-loop containing nucleoside triphosphate hydrolases |G proteins |RhoA |Human (Homo sapiens) [TaxId: 9606]
d2avfd1 : (ARG37) (HIS60) [view usage] : b.6.1.0 |Cupredoxin-like |Cupredoxins |automated matches |automated matches |Achromobacter cycloclastes [TaxId: 223]
d2dhja_ : (ALA10) (TYR39) [view usage] : b.55.1.0 |PH domain-like barrel |PH domain-like |automated matches |automated matches |Human (Homo sapiens) [TaxId: 9606]
d3h7ra_ : (ASP105) (THR133) [view usage] : c.1.7.0 |TIM beta/alpha-barrel |NAD(P)-linked oxidoreductase |automated matches |automated matches |Thale cress (Arabidopsis thaliana) [TaxId: 3702]
d2cnaa_ : (ALA1) (LYS30) [view usage] : b.29.1.1 |Concanavalin A-like lectins/glucanases |Concanavalin A-like lectins/glucanases |Legume lectins |Concanavalin A |Jack bean (Canavalia ensiformis) [TaxId: 3823]
d1z0ha2 : (ASP1232) (PHE1256) [view usage] : b.42.4.2 |beta-Trefoil |STI-like |Clostridium neurotoxins, C-terminal domain |Botulinum neurotoxin |Clostridium botulinum, serotype A [TaxId: 1491]
d3fiqa_ : (GLY14) (GLN40) [view usage] : b.60.1.0 |Lipocalins |Lipocalins |automated matches |automated matches |Norway rat (Rattus norvegicus) [TaxId: 10116]
d1igoa_ : (LEU92) (THR109) [view usage] : b.29.1.11 |Concanavalin A-like lectins/glucanases |Concanavalin A-like lectins/glucanases |Xylanase/endoglucanase 11/12 |Xylanase II |Bacillus subtilis, B230 [TaxId: 1423]
d1yf0a1 : (ASN4) (GLU25) [view usage] : c.47.1.10 |Thioredoxin fold |Thioredoxin-like |Glutathione peroxidase-like |Alkyl hydroperoxide reductase AhpC |Salmonella typhimurium [TaxId: 90371]
d1abrb2 : (ASN193) (LEU209) [view usage] : b.42.2.1 |beta-Trefoil |Ricin B-like lectins |Ricin B-like |Plant cytotoxin B-chain (lectin) |Abrus precatorius [TaxId: 3816]
d1exga_ : (SER46) (GLY62) [view usage] : b.2.2.1 |Common fold of diphtheria toxin/transcription factors/cytochrome f |Carbohydrate-binding domain |Cellulose-binding domain family II |Exo-1,4-beta-D-glycanase (cellulase, xylanase), cellulose-binding domain, CBD |Cellulomonas fimi [TaxId: 1708]
d1x1fa1 : (TYR19) (TRP38) [view usage] : b.55.1.1 |PH domain-like barrel |PH domain-like |Pleckstrin-homology domain (PH domain) |Signal-transducing adaptor protein 1, STAP-1 |Human (Homo sapiens) [TaxId: 9606]
d2cy3a_ : (ALA1) (HIS36) [view usage] : a.138.1.1 |Multiheme cytochromes |Multiheme cytochromes |Cytochrome c3-like |Cytochrome c3 |Desulfovibrio desulfuricans, different strains [TaxId: 876]
d2e51a_ : (LYS1) (THR34) [view usage] : b.29.1.1 |Concanavalin A-like lectins/glucanases |Concanavalin A-like lectins/glucanases |Legume lectins |Legume lectin |Winged bean (Psophocarpus tetragonolobus), basic agglutinin [TaxId: 3891]
d1czja_ : (THR2) (HIS30) [view usage] : a.138.1.1 |Multiheme cytochromes |Multiheme cytochromes |Cytochrome c3-like |Cytochrome c3 |Desulfomicrobium norvegicum [TaxId: 52561]
d1uh6a_ : (GLY24) (LYS44) [view usage] : d.15.1.1 |beta-Grasp (ubiquitin-like) |Ubiquitin-like |Ubiquitin-related |Ubiquitin-like protein 5, ubl5 |Mouse (Mus musculus) [TaxId: 10090]
d4mggc1 : (MET1) (GLU29) [view usage] : d.54.1.0 |Enolase N-terminal domain-like |Enolase N-terminal domain-like |automated matches |automated matches |Labrenzia aggregata [TaxId: 384765]
d2d9za_ : (MET8) (SER33) [view usage] : b.55.1.0 |PH domain-like barrel |PH domain-like |automated matches |automated matches |Human (Homo sapiens) [TaxId: 9606]
d1gt3a_ : (GLY15) (ARG41) [view usage] : b.60.1.1 |Lipocalins |Lipocalins |Retinol binding protein-like |Odorant-binding protein |Cow (Bos taurus) [TaxId: 9913]
d3g5ka_ : (ARG106) (CYS123) [view usage] : d.167.1.0 |Peptide deformylase |Peptide deformylase |automated matches |automated matches |Human (Homo sapiens) [TaxId: 9606]
d1x2ja1 : (LEU373) (SER391) [view usage] : b.68.11.1 |6-bladed beta-propeller |Kelch motif |Kelch motif |Kelch-like ECH-associated protein 1, KEAP1 |Mouse (Mus musculus) [TaxId: 10090]
d4hhvb_ : (PRO23) (LYS48) [view usage] : b.55.1.0 |PH domain-like barrel |PH domain-like |automated matches |automated matches |Human (Homo sapiens) [TaxId: 9606]
d4fo8c_ : (GLY160) (TYR185) [view usage] : d.127.1.1 |Creatinase/aminopeptidase |Creatinase/aminopeptidase |Creatinase/aminopeptidase |automated matches |Pseudomonas aeruginosa [TaxId: 208964]
d2o4ea1 : (ALA127) (GLU162) [view usage] : b.2.2.2 |Common fold of diphtheria toxin/transcription factors/cytochrome f |Carbohydrate-binding domain |Cellulose-binding domain family III |O-GlcNAcase NagJ |Clostridium perfringens [TaxId: 1502]
d1nlia_ : (GLY207) (ASN227) [view usage] : d.165.1.1 |Ribosome inactivating proteins (RIP) |Ribosome inactivating proteins (RIP) |Plant cytotoxins |alpha-Trichosanthin |Mongolian snake gourd (Trichosanthes kirilowii Maxim.) [TaxId: 3677]
d1w7oa_ : (ALA1) (HIS36) [view usage] : a.138.1.1 |Multiheme cytochromes |Multiheme cytochromes |Cytochrome c3-like |Cytochrome c3 |Desulfovibrio baculatus (Desulfomicrobium baculatus) [TaxId: 899]
d3vboc_ : (PRO170) (THR200) [view usage] : b.121.4.0 |Nucleoplasmin-like/VP (viral coat and capsid proteins) |Positive stranded ssRNA viruses |automated matches |automated matches |Human enterovirus 71 [TaxId: 39054]
d4i5pa_ : (PHE93) (ALA109) [view usage] : d.144.1.0 |Protein kinase-like (PK-like) |Protein kinase-like (PK-like) |automated matches |automated matches |Human (Homo sapiens) [TaxId: 9606]
d3zvjm_ : (PRO10) (CYS26) [view usage] : c.47.1.0 |Thioredoxin fold |Thioredoxin-like |automated matches |automated matches |Blood fluke (Schistosoma mansoni) [TaxId: 6183]
d2qx3a_ : (GLY285) (LYS319) [view usage] : b.80.1.0 |Single-stranded right-handed beta-helix |Pectin lyase-like |automated matches |automated matches |Xanthomonas campestris pv. campestris [TaxId: 340]
d1giua_ : (GLY207) (ASN227) [view usage] : d.165.1.1 |Ribosome inactivating proteins (RIP) |Ribosome inactivating proteins (RIP) |Plant cytotoxins |alpha-Trichosanthin |Mongolian snake gourd (Trichosanthes kirilowii Maxim.) [TaxId: 3677]
d2l5ta_ : (LYS31) (PRO48) [view usage] : b.84.1.1 |Barrel-sandwich hybrid |Single hybrid motif |Biotinyl/lipoyl-carrier proteins and domains |automated matches |Thermoplasma acidophilum [TaxId: 2303]
List of distinct SCOP folds where this concept is used (in one or more of its domains):
b.68, b.80, c.1, i.1, b.29, d.165, b.50, d.144, c.37, c.47, b.60, b.18, b.121, d.3, d.127, b.2, b.6, b.1, b.42, b.84,
b.77, b.55, d.167, b.34, a.138, d.15, a.55, d.54, g.8, d.378, b.75, g.14, a.262