Tableau information
Concept source: d1ub6a1 amino acid (a.a.) range (LEU94)(VAL114)
nSSEs in this Concept: 3
String of secondary struct.elems. (SSEs) defining this concept: EEE
Each SSE's a.a.range: (start resi) (end resi) SSEtype (H=Helix; E=Strand) followed by a numeric SSE ID:
(LEU94) (ALA98) E1
(ARG103) (GLY107) E2
(THR110) (VAL114) E3
Orientation angles° of SSE-pairs; those in contact shown in bold font
E1
E2 142.4° E2
E3 133.7° 59.0°
Footnote: Inferred from this concept's usages (listed below) was the angular variance of 1σ = ±9.9° about each orientation angle shown above.
Loci of concept usages (shown as a range of a.a. residue ids) in SCOP(v2.05) domains, along with their brief legend taken from SCOP
d1ecya_ : (ASN51) (THR83) [view usage] : b.16.1.1 |Ecotin, trypsin inhibitor |Ecotin, trypsin inhibitor |Ecotin, trypsin inhibitor |Ecotin, trypsin inhibitor |Escherichia coli [TaxId: 562]
d1uw7a_ : (PHE-9) (SER13) [view usage] : b.140.1.1 |Replicase NSP9 |Replicase NSP9 |Replicase NSP9 |Replicase NSP9 |SARS coronavirus [TaxId: 227859]
d1tula_ : (TYR81) (ARG108) [view usage] : b.85.5.1 |beta-clip |Tlp20, baculovirus telokin-like protein |Tlp20, baculovirus telokin-like protein |Tlp20, baculovirus telokin-like protein |AcMNPV (Autographa californica nuclear polyhedrosis virus) [TaxId: 46015]
d1umha_ : (ARG266) (PRO297) [view usage] : b.18.1.21 |Galactose-binding domain-like |Galactose-binding domain-like |F-box associated region, FBA |F-box only protein 2 |Mouse (Mus musculus) [TaxId: 10090]
d2vzoa5 : (ARG830) (PRO862) [view usage] : b.1.4.0 |Immunoglobulin-like beta-sandwich |beta-Galactosidase/glucuronidase domain |automated matches |automated matches |Amycolatopsis orientalis [TaxId: 31958]
d2rj2a_ : (ARG266) (PRO297) [view usage] : b.18.1.21 |Galactose-binding domain-like |Galactose-binding domain-like |F-box associated region, FBA |automated matches |Mouse (Mus musculus) [TaxId: 10090]
d1j87a2 : (THR148) (LYS171) [view usage] : b.1.1.4 |Immunoglobulin-like beta-sandwich |Immunoglobulin |I set domains |IgE high affinity receptor alpha subunit |Human (Homo sapiens) [TaxId: 9606]
d1azzd_ : (ASN51) (THR83) [view usage] : b.16.1.1 |Ecotin, trypsin inhibitor |Ecotin, trypsin inhibitor |Ecotin, trypsin inhibitor |Ecotin, trypsin inhibitor |Escherichia coli [TaxId: 562]
d1g90a_ : (THR6) (VAL45) [view usage] : f.4.1.1 |Transmembrane beta-barrels |OMPA-like |Outer membrane protein |Outer membrane protein A (OMPA) transmembrane domain |Escherichia coli [TaxId: 562]
d1wf5a1 : (TYR89) (PRO114) [view usage] : b.1.2.1 |Immunoglobulin-like beta-sandwich |Fibronectin type III |Fibronectin type III |Sidekick 2 |Human (Homo sapiens) [TaxId: 9606]
d1pmra_ : (ASP57) (ASN80) [view usage] : b.84.1.1 |Barrel-sandwich hybrid |Single hybrid motif |Biotinyl/lipoyl-carrier proteins and domains |Lipoyl domain of the 2-oxoglutarate dehydrogenase complex |Escherichia coli [TaxId: 562]
d2hgj31 : (ALA12) (PRO41) [view usage] : d.325.1.2 |L28p-like |L28p-like |Ribosomal protein L31p |Ribosomal protein L31p |Thermus thermophilus [TaxId: 274]
d2ozkc1 : (THR152) (ASP183) [view usage] : c.66.1.48 |S-adenosyl-L-methionine-dependent methyltransferases |S-adenosyl-L-methionine-dependent methyltransferases |Nsp15 N-terminal domain-like |Nsp15 |SARS coronavirus [TaxId: 227859]
d1lnla2 : (VAL375) (LYS405) [view usage] : b.112.1.1 |C-terminal domain of mollusc hemocyanin |C-terminal domain of mollusc hemocyanin |C-terminal domain of mollusc hemocyanin |C-terminal domain of mollusc hemocyanin |Mollusca (Rapana thomasiana) [TaxId: 29165]
d3ry5a2 : (ASP151) (GLN173) [view usage] : b.1.1.4 |Immunoglobulin-like beta-sandwich |Immunoglobulin |I set domains |automated matches |Human (Homo sapiens) [TaxId: 9606]
d1fnfa2 : (TYR1303) (GLY1326) [view usage] : b.1.2.1 |Immunoglobulin-like beta-sandwich |Fibronectin type III |Fibronectin type III |Fibronectin, different Fn3 modules |Human (Homo sapiens) [TaxId: 9606]
d1xxfc_ : (LEU52) (THR83) [view usage] : b.16.1.1 |Ecotin, trypsin inhibitor |Ecotin, trypsin inhibitor |Ecotin, trypsin inhibitor |Ecotin, trypsin inhibitor |Escherichia coli [TaxId: 562]
d1gted2 : (SER739) (GLY767) [view usage] : c.1.4.1 |TIM beta/alpha-barrel |FMN-linked oxidoreductases |FMN-linked oxidoreductases |Dihydropyrimidine dehydrogenase, domain 4 |Pig (Sus scrofa) [TaxId: 9823]
d1j88a2 : (THR148) (LYS171) [view usage] : b.1.1.4 |Immunoglobulin-like beta-sandwich |Immunoglobulin |I set domains |IgE high affinity receptor alpha subunit |Human (Homo sapiens) [TaxId: 9606]
d2gi7a1 : (GLY64) (THR88) [view usage] : b.1.1.0 |Immunoglobulin-like beta-sandwich |Immunoglobulin |automated matches |automated matches |Human (Homo sapiens) [TaxId: 9606]
d3bn3b2 : (GLY162) (SER194) [view usage] : b.1.1.0 |Immunoglobulin-like beta-sandwich |Immunoglobulin |automated matches |automated matches |Human (Homo sapiens) [TaxId: 9606]
d2ywya_ : (GLY79) (ALA112) [view usage] : b.1.1.1 |Immunoglobulin-like beta-sandwich |Immunoglobulin |V set domains (antibody variable domain-like) |automated matches |Spotted wobbegong (Orectolobus maculatus) [TaxId: 168098]
d1rj8a_ : (ARG357) (GLY386) [view usage] : b.22.1.1 |TNF-like |TNF-like |TNF-like |Ectodysplasin A, Eda-a1 |Human (Homo sapiens) [TaxId: 9606]
d2c9aa1 : (GLY256) (LYS279) [view usage] : b.1.1.4 |Immunoglobulin-like beta-sandwich |Immunoglobulin |I set domains |Receptor-type tyrosine-protein phosphatase mu |Human (Homo sapiens) [TaxId: 9606]
d4l40a_ : (ILE386) (THR422) [view usage] : a.104.1.0 |Cytochrome P450 |Cytochrome P450 |automated matches |automated matches |Jeotgalicoccus sp. [TaxId: 946435]
d2vzua5 : (ARG830) (TRP861) [view usage] : b.1.4.0 |Immunoglobulin-like beta-sandwich |beta-Galactosidase/glucuronidase domain |automated matches |automated matches |Amycolatopsis orientalis [TaxId: 31958]
d2edma1 : (ASP127) (SER155) [view usage] : b.170.1.1 |WSSV envelope protein-like |WSSV envelope protein-like |WSSV envelope protein-like |Envelope protein VP26 |White spot syndrome virus, WSSV [TaxId: 92652]
d1id5i_ : (ASN51) (THR83) [view usage] : b.16.1.1 |Ecotin, trypsin inhibitor |Ecotin, trypsin inhibitor |Ecotin, trypsin inhibitor |Ecotin, trypsin inhibitor |Escherichia coli [TaxId: 562]
d1jx0a_ : (GLY32) (GLU55) [view usage] : d.36.1.1 |Chalcone isomerase |Chalcone isomerase |Chalcone isomerase |Chalcone isomerase |Alfalfa (Medicago sativa) [TaxId: 3879]
d1t66d1 : (GLY94) (SER117) [view usage] : b.1.1.1 |Immunoglobulin-like beta-sandwich |Immunoglobulin |V set domains (antibody variable domain-like) |Immunoglobulin heavy chain variable domain, VH |Mouse (Mus musculus), cluster 1 [TaxId: 10090]
d1vhya1 : (ASN47) (ASP73) [view usage] : b.122.1.2 |PUA domain-like |PUA domain-like |YggJ N-terminal domain-like |Hypothetical protein HI0303 |Haemophilus influenzae [TaxId: 727]
d1brup_ : (GLY196) (LEU218) [view usage] : b.47.1.2 |Trypsin-like serine proteases |Trypsin-like serine proteases |Eukaryotic proteases |Elastase |Pig (Sus scrofa) [TaxId: 9823]
d1i52a_ : (THR140) (PRO166) [view usage] : c.68.1.13 |Nucleotide-diphospho-sugar transferases |Nucleotide-diphospho-sugar transferases |Cytidylytransferase |4-diphosphocytidyl-2C-methyl-D-erythritol (CDP-me) synthase (IspD, YgbP) |Escherichia coli [TaxId: 562]
d3e3qc_ : (ALA86) (LEU115) [view usage] : b.1.1.1 |Immunoglobulin-like beta-sandwich |Immunoglobulin |V set domains (antibody variable domain-like) |automated matches |Mouse (Mus musculus) [TaxId: 10090]
d3c5zb1 : (ALA85) (GLU111) [view usage] : b.1.1.0 |Immunoglobulin-like beta-sandwich |Immunoglobulin |automated matches |automated matches |Mouse (Mus musculus) [TaxId: 10090]
d1ktke1 : (PHE89) (GLU118) [view usage] : b.1.1.1 |Immunoglobulin-like beta-sandwich |Immunoglobulin |V set domains (antibody variable domain-like) |T-cell antigen receptor |Human (Homo sapiens), beta-chain [TaxId: 9606]
List of distinct SCOP folds where this concept is used (in one or more of its domains):
c.1, a.104, c.68, b.47, c.66, f.4, b.18, b.85, b.122, b.1, b.84, b.22, b.16, d.36, b.140, b.170, b.112, d.325