Tableau information
Concept source: d1oqoa2 amino acid (a.a.) range (ILE377)(SER400)
nSSEs in this Concept: 3
String of secondary struct.elems. (SSEs) defining this concept: EEE
Each SSE's a.a.range: (start resi) (end resi) SSEtype (H=Helix; E=Strand) followed by a numeric SSE ID:
(ILE377) (ASN384) E1
(GLN386) (ASN390) E2
(ASN390) (SER400) E3
Orientation angles° of SSE-pairs; those in contact shown in bold font
E1
E2 116.3° E2
E3 145.2° 75.2°
Footnote: Inferred from this concept's usages (listed below) was the angular variance of 1σ = ±9.8° about each orientation angle shown above.
Loci of concept usages (shown as a range of a.a. residue ids) in SCOP(v2.05) domains, along with their brief legend taken from SCOP
d4v19q_ : (LYS129) (LYS155) [view usage] : i.1.1.2 |Ribosome and ribosomal fragments |Ribosome and ribosomal fragments |Large subunit |Eukaryotic, mitochondrial (54S or 39S subunit) |Pig (Sus scrofa) [TaxId: 9823]
d4hr7g_ : (LYS136) (GLU156) [view usage] : b.84.1.1 |Barrel-sandwich hybrid |Single hybrid motif |Biotinyl/lipoyl-carrier proteins and domains |automated matches |Escherichia coli K-12 [TaxId: 83333]
d1tdqa3 : (ILE251) (ASP269) [view usage] : b.1.2.1 |Immunoglobulin-like beta-sandwich |Fibronectin type III |Fibronectin type III |Tenascin |Norway rat (Rattus norvegicus) [TaxId: 10116]
d1n73c1 : (ILE365) (PRO386) [view usage] : d.171.1.1 |Fibrinogen C-terminal domain-like |Fibrinogen C-terminal domain-like |Fibrinogen C-terminal domain-like |Fibrinogen C-terminal domains |Sea lamprey (Petromyzon marinus), gamma [TaxId: 7757]
d2j0111 : (ALA15) (LEU46) [view usage] : d.325.1.1 |L28p-like |L28p-like |Ribosomal protein L28 |Ribosomal protein L28 (L28p) |Thermus thermophilus [TaxId: 274]
d4mpoa_ : (LYS5) (GLU48) [view usage] : d.113.1.0 |Nudix |Nudix |automated matches |automated matches |Chlamydia trachomatis [TaxId: 471472]
d1u2ca1 : (VAL126) (PRO156) [view usage] : b.1.6.2 |Immunoglobulin-like beta-sandwich |Cadherin-like |Dystroglycan, N-terminal domain |Dystroglycan, N-terminal domain |Mouse (Mus musculus) [TaxId: 10090]
d4a76c_ : (GLU84) (GLY104) [view usage] : b.40.4.0 |OB-fold |Nucleic acid-binding proteins |automated matches |automated matches |Xenopus (Silurana) tropicalis [TaxId: 8364]
d3tewa2 : (LEU20) (THR40) [view usage] : b.179.1.1 |Anthrax protective antigen N-terminal-like |PA14-like |PA14 |PA14 |Bacillus anthracis
d2e4qc_ : (GLU84) (HIS108) [view usage] : b.33.1.1 |ISP domain |ISP domain |Rieske iron-sulfur protein (ISP) |automated matches |Pseudomonas sp. [TaxId: 306]
d1ynjd1 : (HIS350) (ILE371) [view usage] : e.29.1.2 |beta and beta-prime subunits of DNA dependent RNA-polymerase |beta and beta-prime subunits of DNA dependent RNA-polymerase |RNA-polymerase beta-prime |RNA-polymerase beta-prime |Thermus aquaticus [TaxId: 271]
d4o5ha_ : (GLY378) (ASP395) [view usage] : c.82.1.0 |ALDH-like |ALDH-like |automated matches |automated matches |Burkholderia cenocepacia [TaxId: 216591]
d1a6xa_ : (LYS136) (GLU156) [view usage] : b.84.1.1 |Barrel-sandwich hybrid |Single hybrid motif |Biotinyl/lipoyl-carrier proteins and domains |Biotinyl domain of acetyl-CoA carboxylase |Escherichia coli [TaxId: 562]
d1o6eb_ : (SER114) (CYS143) [view usage] : b.57.1.1 |Herpes virus serine proteinase, assemblin |Herpes virus serine proteinase, assemblin |Herpes virus serine proteinase, assemblin |Epstein-Barr virus protease |Human herpesvirus 4 [TaxId: 10376]
d4dxfa1 : (ASN71) (LYS99) [view usage] : b.40.2.0 |OB-fold |Bacterial enterotoxins |automated matches |automated matches |Staphylococcus aureus [TaxId: 93061]
d3brda1 : (ASP635) (TYR658) [view usage] : b.1.18.1 |Immunoglobulin-like beta-sandwich |E set domains |NF-kappa-B/REL/DORSAL transcription factors, C-terminal domain |DNA-binding protein LAG-1 (CSL) |Nematode (Caenorhabditis elegans) [TaxId: 6239]
d1syga_ : (LYS71) (ASP95) [view usage] : b.40.1.1 |OB-fold |Staphylococcal nuclease |Staphylococcal nuclease |Staphylococcal nuclease |Staphylococcus aureus [TaxId: 1280]
d1skza1 : (GLY16) (CYS51) [view usage] : g.3.15.1 |Knottins (small inhibitors, toxins, lectins) |Leech antihemostatic proteins |Huristasin-like |Factor Xa inhibitor antistasin |Mexican leech (Haementeria officinalis) [TaxId: 6410]
d3kfdf_ : (LYS23) (ILE53) [view usage] : g.7.1.3 |Snake toxin-like |Snake toxin-like |Extracellular domain of cell surface receptors |TGF-beta type II receptor extracellular domain |Human (Homo sapiens) [TaxId: 9606]
d1y4wa1 : (VAL511) (TRP536) [view usage] : b.29.1.19 |Concanavalin A-like lectins/glucanases |Concanavalin A-like lectins/glucanases |Glycosyl hydrolases family 32 C-terminal domain |Exo-inulinase |Aspergillus awamori [TaxId: 105351]
d1khrb_ : (ASN58) (ASN78) [view usage] : b.81.1.3 |Single-stranded left-handed beta-helix |Trimeric LpxA-like enzymes |Galactoside acetyltransferase-like |Xenobiotic acetyltransferase |Enterococcus faecium, VAT(D) [TaxId: 1352]
d2qiea_ : (GLY73) (SER97) [view usage] : d.41.5.0 |alpha/beta-Hammerhead |Molybdopterin synthase subunit MoaE |automated matches |automated matches |Staphylococcus aureus [TaxId: 1280]
d1sbbb1 : (VAL82) (HIS121) [view usage] : b.40.2.2 |OB-fold |Bacterial enterotoxins |Superantigen toxins, N-terminal domain |Staphylococcal enterotoxin B, SEB |Staphylococcus aureus [TaxId: 1280]
d3nqyb_ : (ASN235) (THR262) [view usage] : d.92.1.2 |Zincin-like |Metalloproteases ("zincins"), catalytic domain |Thermolysin-like |automated matches |Pseudoalteromonas sp. [TaxId: 234831]
d1mr7a_ : (ASN58) (ASN78) [view usage] : b.81.1.3 |Single-stranded left-handed beta-helix |Trimeric LpxA-like enzymes |Galactoside acetyltransferase-like |Xenobiotic acetyltransferase |Enterococcus faecium, VAT(D) [TaxId: 1352]
d1ogmx2 : (SER427) (PHE462) [view usage] : b.80.1.10 |Single-stranded right-handed beta-helix |Pectin lyase-like |Dextranase, catalytic domain |Dextranase, catalytic domain |Penicillium minioluteum [TaxId: 28574]
d1mrla_ : (ASN58) (ASN78) [view usage] : b.81.1.3 |Single-stranded left-handed beta-helix |Trimeric LpxA-like enzymes |Galactoside acetyltransferase-like |Xenobiotic acetyltransferase |Enterococcus faecium, VAT(D) [TaxId: 1352]
d2cu2a2 : (GLY149) (LYS169) [view usage] : c.68.1.20 |Nucleotide-diphospho-sugar transferases |Nucleotide-diphospho-sugar transferases |mannose-1-phosphate guanylyl transferase |Putative mannose-1-phosphate guanylyl transferase (GDP)/mannose-6-phosphate isomerase TTHA1750 |Thermus thermophilus [TaxId: 274]
d4iw3b2 : (ASP253) (ALA274) [view usage] : b.43.3.0 |Reductase/isomerase/elongation factor common domain |Translation proteins |automated matches |automated matches |Pseudomonas putida [TaxId: 160488]
d4mpoe_ : (LYS5) (GLU48) [view usage] : d.113.1.0 |Nudix |Nudix |automated matches |automated matches |Chlamydia trachomatis [TaxId: 471472]
d1ploa_ : (LYS23) (ILE53) [view usage] : g.7.1.3 |Snake toxin-like |Snake toxin-like |Extracellular domain of cell surface receptors |TGF-beta type II receptor extracellular domain |Human (Homo sapiens) [TaxId: 9606]
d1aira_ : (MET132) (HIS145) [view usage] : b.80.1.1 |Single-stranded right-handed beta-helix |Pectin lyase-like |Pectate lyase-like |Pectate lyase |Erwinia chrysanthemi, type C [TaxId: 556]
d2rksa_ : (LYS70) (ASP95) [view usage] : b.40.1.1 |OB-fold |Staphylococcal nuclease |Staphylococcal nuclease |Staphylococcal nuclease |Staphylococcus aureus [TaxId: 1280]
d1ttua1 : (ASP635) (TYR658) [view usage] : b.1.18.1 |Immunoglobulin-like beta-sandwich |E set domains |NF-kappa-B/REL/DORSAL transcription factors, C-terminal domain |DNA-binding protein LAG-1 (CSL) |Nematode (Caenorhabditis elegans) [TaxId: 6239]
d4a76a_ : (GLU84) (GLY104) [view usage] : b.40.4.0 |OB-fold |Nucleic acid-binding proteins |automated matches |automated matches |Xenopus (Silurana) tropicalis [TaxId: 8364]
d1m7ja1 : (ASP9) (GLY34) [view usage] : b.92.1.6 |Composite domain of metallo-dependent hydrolases |Composite domain of metallo-dependent hydrolases |D-aminoacylase |N-acyl-D-aminoacid amidohydrolase |Alcaligenes faecalis [TaxId: 511]
d2rqaa_ : (TYR588) (CYS612) [view usage] : b.88.2.1 |Mss4-like |RIG-I C-terminal-like |RIG-I C-terminal domain-like |LGP2 C-terminal domain |Human (Homo sapiens) [TaxId: 9606]
d1le9b2 : (GLY39) (TYR79) [view usage] : b.2.5.3 |Common fold of diphtheria toxin/transcription factors/cytochrome f |p53-like transcription factors |Rel/Dorsal transcription factors, DNA-binding domain |p50 subunit of NF-kappa B (NFKB), N-terminal domain |Mouse (Mus musculus) [TaxId: 10090]
d3sxsa_ : (ILE417) (LYS437) [view usage] : d.144.1.7 |Protein kinase-like (PK-like) |Protein kinase-like (PK-like) |Protein kinases, catalytic subunit |automated matches |Human (Homo sapiens) [TaxId: 9606]
d4dnla_ : (ASP237) (GLY262) [view usage] : b.7.1.2 |C2 domain-like |C2 domain (Calcium/lipid-binding domain, CaLB) |Synaptotagmin-like (S variant) |automated matches |Human (Homo sapiens) [TaxId: 9606]
d1vw4k_ : (VAL117) (PRO143) [view usage] : i.1.1.2 |Ribosome and ribosomal fragments |Ribosome and ribosomal fragments |Large subunit |Eukaryotic, mitochondrial (54S or 39S subunit) |Saccharomyces cerevisiae [TaxId: 4932]
d1ktzb_ : (PRO25) (ILE53) [view usage] : g.7.1.3 |Snake toxin-like |Snake toxin-like |Extracellular domain of cell surface receptors |TGF-beta type II receptor extracellular domain |Human (Homo sapiens) [TaxId: 9606]
d4rcoa1 : (ASN179) (LYS207) [view usage] : b.40.2.0 |OB-fold |Bacterial enterotoxins |automated matches |automated matches |Staphylococcus aureus [TaxId: 93061]
d1w4ta1 : (GLY163) (ASP182) [view usage] : d.3.1.5 |Cysteine proteinases |Cysteine proteinases |Arylamine N-acetyltransferase |Arylamine N-acetyltransferase |Pseudomonas aeruginosa [TaxId: 287]
d4iiqb1 : (SER87) (GLU116) [view usage] : b.1.1.0 |Immunoglobulin-like beta-sandwich |Immunoglobulin |automated matches |automated matches |Human (Homo sapiens) [TaxId: 9606]
d1kb5a_ : (ALA86) (VAL114) [view usage] : b.1.1.1 |Immunoglobulin-like beta-sandwich |Immunoglobulin |V set domains (antibody variable domain-like) |T-cell antigen receptor |Mouse (Mus musculus), alpha-chain [TaxId: 10090]
d1udeb_ : (TYR56) (MET76) [view usage] : b.40.5.1 |OB-fold |Inorganic pyrophosphatase |Inorganic pyrophosphatase |Inorganic pyrophosphatase |Pyrococcus horikoshii [TaxId: 53953]
d1o8pa_ : (ASP130) (LYS148) [view usage] : b.18.1.10 |Galactose-binding domain-like |Galactose-binding domain-like |Family 6 carbohydrate binding module, CBM6 |Putative xylanase |Clostridium stercorarium [TaxId: 1510]
d3urya1 : (ASN179) (LYS207) [view usage] : b.40.2.0 |OB-fold |Bacterial enterotoxins |automated matches |automated matches |Staphylococcus aureus [TaxId: 93061]
d1adea_ : (LYS339) (SER379) [view usage] : c.37.1.10 |P-loop containing nucleoside triphosphate hydrolases |P-loop containing nucleoside triphosphate hydrolases |Nitrogenase iron protein-like |Adenylosuccinate synthetase, PurA |Escherichia coli [TaxId: 562]
d1cx1a_ : (GLY127) (THR153) [view usage] : b.18.1.14 |Galactose-binding domain-like |Galactose-binding domain-like |CBM4/9 |Cellulose-binding domain of cellulase C |Cellulomonas fimi [TaxId: 1708]
d1m4ka1 : (THR76) (ILE101) [view usage] : b.1.1.4 |Immunoglobulin-like beta-sandwich |Immunoglobulin |I set domains |Killer cell inhibitory receptor |Human (Homo sapiens), kir2ds3, CD158j [TaxId: 9606]
d2bera3 : (ARG284) (ASP304) [view usage] : b.68.1.1 |6-bladed beta-propeller |Sialidases |Sialidases (neuraminidases) |automated matches |Micromonospora viridifaciens [TaxId: 1881]
d2pqea_ : (LYS70) (ASP95) [view usage] : b.40.1.1 |OB-fold |Staphylococcal nuclease |Staphylococcal nuclease |Staphylococcal nuclease |Staphylococcus aureus [TaxId: 1280]
d3mizb_ : (ILE129) (ASN145) [view usage] : c.93.1.0 |Periplasmic binding protein-like I |Periplasmic binding protein-like I |automated matches |automated matches |Rhizobium etli [TaxId: 347834]
d1khra_ : (ASN58) (ASN78) [view usage] : b.81.1.3 |Single-stranded left-handed beta-helix |Trimeric LpxA-like enzymes |Galactoside acetyltransferase-like |Xenobiotic acetyltransferase |Enterococcus faecium, VAT(D) [TaxId: 1352]
d4hr7d_ : (LYS136) (GLU156) [view usage] : b.84.1.1 |Barrel-sandwich hybrid |Single hybrid motif |Biotinyl/lipoyl-carrier proteins and domains |automated matches |Escherichia coli K-12 [TaxId: 83333]
d1bdoa_ : (LYS136) (GLU156) [view usage] : b.84.1.1 |Barrel-sandwich hybrid |Single hybrid motif |Biotinyl/lipoyl-carrier proteins and domains |Biotinyl domain of acetyl-CoA carboxylase |Escherichia coli [TaxId: 562]
d4dxfb1 : (ASN71) (LYS99) [view usage] : b.40.2.0 |OB-fold |Bacterial enterotoxins |automated matches |automated matches |Staphylococcus aureus [TaxId: 93061]
d3c0ia_ : (ASN136) (GLU171) [view usage] : d.144.1.0 |Protein kinase-like (PK-like) |Protein kinase-like (PK-like) |automated matches |automated matches |Human (Homo sapiens) [TaxId: 9606]
d4mmzc_ : (TYR1483) (ASN1506) [view usage] : b.1.2.0 |Immunoglobulin-like beta-sandwich |Fibronectin type III |automated matches |automated matches |Human (Homo sapiens) [TaxId: 9606]
List of distinct SCOP folds where this concept is used (in one or more of its domains):
b.68, b.80, b.81, i.1, c.68, b.29, c.82, d.92, c.93, d.144, b.40, c.37, d.171, b.18, d.3, b.2, b.1, b.179, b.84, d.41,
b.7, b.43, b.88, d.113, b.33, g.7, g.3, e.29, b.57, d.325, b.92