Tableau information
Concept source: d1aoca_ amino acid (a.a.) range (PHE107)(VAL146)
nSSEs in this Concept: 3
String of secondary struct.elems. (SSEs) defining this concept: EEE
Each SSE's a.a.range: (start resi) (end resi) SSEtype (H=Helix; E=Strand) followed by a numeric SSE ID:
(PHE107) (ALA113) E1
(PHE118) (CYS127) E2
(THR141) (VAL146) E3
Orientation angles° of SSE-pairs; those in contact shown in bold font
E1
E2 -123.6° E2
E3 68.5° 159.2°
Footnote: Inferred from this concept's usages (listed below) was the angular variance of 1σ = ±7.5° about each orientation angle shown above.
Loci of concept usages (shown as a range of a.a. residue ids) in SCOP(v2.05) domains, along with their brief legend taken from SCOP
d2e2dc_ : (GLU1061) (LEU1085) [view usage] : b.40.3.1 |OB-fold |TIMP-like |Tissue inhibitor of metalloproteinases, TIMP |TIMP-2 |Cow (Bos taurus) [TaxId: 9913]
d2b5la4 : (GLU445) (ASN462) [view usage] : b.69.4.3 |7-bladed beta-propeller |WD40 repeat-like |DDB1-like |DDB1 |Human (Homo sapiens) [TaxId: 9606]
d1miqb_ : (ASN181) (LYS208) [view usage] : b.50.1.2 |Acid proteases |Acid proteases |Pepsin-like |Plasmepsin (a hemoglobin-degrading enzyme) |Plasmodium vivax [TaxId: 5855]
d4kl5b_ : (GLN46) (ALA68) [view usage] : b.86.1.0 |Hedgehog/intein (Hint) domain |Hedgehog/intein (Hint) domain |automated matches |automated matches |Nostoc punctiforme [TaxId: 63737]
d1xqga_ : (LYS345) (SER373) [view usage] : e.1.1.1 |Serpins |Serpins |Serpins |Maspin |Human (Homo sapiens) [TaxId: 9606]
d1ioaa_ : (ASP54) (ALA90) [view usage] : b.29.1.1 |Concanavalin A-like lectins/glucanases |Concanavalin A-like lectins/glucanases |Legume lectins |Phytohemagglutinin-L, PHA-L, also arcelin |French bean (Phaseolus vulgaris), G02771, arcelin-5a [TaxId: 3885]
d1pcea_ : (SER6) (SER37) [view usage] : g.68.1.1 |Kazal-type serine protease inhibitors |Kazal-type serine protease inhibitors |Ovomucoid domain III-like |PEC-60 peptide |Pig (Sus scrofa) [TaxId: 9823]
d1gpia_ : (GLN2) (LEU34) [view usage] : b.29.1.10 |Concanavalin A-like lectins/glucanases |Concanavalin A-like lectins/glucanases |Glycosyl hydrolase family 7 catalytic core |Cellobiohydrolase I (cellulase, Endoglucanase I, CBH1) |Basidomycetes fungus (Phanerochaete chrysosporium), Cel7d [TaxId: 5306]
d3zyrb_ : (SER62) (PHE99) [view usage] : b.29.1.1 |Concanavalin A-like lectins/glucanases |Concanavalin A-like lectins/glucanases |Legume lectins |automated matches |Platypodium elegans [TaxId: 115002]
d1l8fa_ : (GLY3) (GLY70) [view usage] : b.52.1.1 |Double psi beta-barrel |Barwin-like endoglucanases |Eng V-like |Endoglucanase V (Eng V) |Fungus (Melanocarpus albomyces) [TaxId: 204285]
d3ourb_ : (GLY155) (LYS169) [view usage] : b.84.3.1 |Barrel-sandwich hybrid |Duplicated hybrid motif |Glucose permease-like |automated matches |Vibrio vulnificus [TaxId: 216895]
d2v90c_ : (PRO247) (LEU277) [view usage] : b.36.1.0 |PDZ domain-like |PDZ domain-like |automated matches |automated matches |Human (Homo sapiens) [TaxId: 9606]
d2y9na_ : (GLN19) (LEU50) [view usage] : b.29.1.10 |Concanavalin A-like lectins/glucanases |Concanavalin A-like lectins/glucanases |Glycosyl hydrolase family 7 catalytic core |automated matches |Hypocrea lixii [TaxId: 5544]
d1y94a_ : (ASN94) (ALA122) [view usage] : d.5.1.1 |RNase A-like |RNase A-like |Ribonuclease A-like |Seminal ribonucleasease |Cow (Bos taurus) [TaxId: 9913]
d2ioba2 : (PRO109) (ILE134) [view usage] : d.3.1.15 |Cysteine proteinases |Cysteine proteinases |CHAP domain |Glutathionylspermidine synthase, amidase domain |Escherichia coli [TaxId: 562]
d3zyra_ : (ALA63) (PHE99) [view usage] : b.29.1.1 |Concanavalin A-like lectins/glucanases |Concanavalin A-like lectins/glucanases |Legume lectins |automated matches |Platypodium elegans [TaxId: 115002]
d1peaa_ : (GLY325) (GLU359) [view usage] : c.93.1.1 |Periplasmic binding protein-like I |Periplasmic binding protein-like I |L-arabinose binding protein-like |Amide receptor/negative regulator of the amidase operon (AmiC) |Pseudomonas aeruginosa [TaxId: 287]
d1ebba_ : (PRO174) (VAL195) [view usage] : c.60.1.1 |Phosphoglycerate mutase-like |Phosphoglycerate mutase-like |Cofactor-dependent phosphoglycerate mutase |Broad specificity phosphatase PhoE (YhfR) |Bacillus stearothermophilus [TaxId: 1422]
d1i16a_ : (GLU27) (ILE61) [view usage] : b.36.1.2 |PDZ domain-like |PDZ domain-like |Interleukin 16 |Interleukin 16 |Human (Homo sapiens) [TaxId: 9606]
d1aoca_ : (PHE107) (VAL146) [view usage] : g.17.1.5 |Cystine-knot cytokines |Cystine-knot cytokines |Coagulogen |Coagulogen |Japanese horseshoe crab (Tachypleus tridentatus) [TaxId: 6853]
d1a5pa_ : (ASN94) (ALA122) [view usage] : d.5.1.1 |RNase A-like |RNase A-like |Ribonuclease A-like |Ribonuclease A (also ribonuclease B, S) |Cow (Bos taurus) [TaxId: 9913]
d2rrma_ : (HIS-1) (ASP41) [view usage] : b.36.1.1 |PDZ domain-like |PDZ domain-like |PDZ domain |automated matches |Mouse (Mus musculus) [TaxId: 10090]
d2cela_ : (SER2) (ILE34) [view usage] : b.29.1.10 |Concanavalin A-like lectins/glucanases |Concanavalin A-like lectins/glucanases |Glycosyl hydrolase family 7 catalytic core |Cellobiohydrolase I (cellulase, Endoglucanase I, CBH1) |Trichoderma reesei, Cel7A [TaxId: 51453]
d3va8a2 : (TYR343) (GLY376) [view usage] : c.1.11.0 |TIM beta/alpha-barrel |Enolase C-terminal domain-like |automated matches |automated matches |Fusarium graminearum (Gibberella zeae) [TaxId: 5518]
d4cela_ : (SER2) (ILE34) [view usage] : b.29.1.10 |Concanavalin A-like lectins/glucanases |Concanavalin A-like lectins/glucanases |Glycosyl hydrolase family 7 catalytic core |Cellobiohydrolase I (cellulase, Endoglucanase I, CBH1) |Trichoderma reesei, Cel7A [TaxId: 51453]
d2yuba_ : (PRO13) (VAL48) [view usage] : b.36.1.0 |PDZ domain-like |PDZ domain-like |automated matches |automated matches |Mouse (Mus musculus) [TaxId: 10090]
d4n0qa_ : (THR340) (LEU367) [view usage] : c.93.1.0 |Periplasmic binding protein-like I |Periplasmic binding protein-like I |automated matches |automated matches |Brucella melitensis [TaxId: 224914]
d3tsrb_ : (PRO94) (ALA123) [view usage] : d.5.1.1 |RNase A-like |RNase A-like |Ribonuclease A-like |automated matches |Mouse (Mus musculus) [TaxId: 10090]
d3d63a_ : (GLY83) (LEU106) [view usage] : b.40.5.1 |OB-fold |Inorganic pyrophosphatase |Inorganic pyrophosphatase |automated matches |Burkholderia pseudomallei [TaxId: 320372]
d3di9a_ : (ASN94) (ALA122) [view usage] : d.5.1.1 |RNase A-like |RNase A-like |Ribonuclease A-like |Ribonuclease A (also ribonuclease B, S) |Cow (Bos taurus) [TaxId: 9913]
d2ogpa_ : (VAL19) (VAL53) [view usage] : b.36.1.0 |PDZ domain-like |PDZ domain-like |automated matches |automated matches |Norway rat (Rattus norvegicus) [TaxId: 10116]
d1miqa_ : (ASN181) (LYS208) [view usage] : b.50.1.2 |Acid proteases |Acid proteases |Pepsin-like |Plasmepsin (a hemoglobin-degrading enzyme) |Plasmodium vivax [TaxId: 5855]
d2kpka_ : (LYS14) (ILE43) [view usage] : b.36.1.1 |PDZ domain-like |PDZ domain-like |PDZ domain |automated matches |Human (Homo sapiens) [TaxId: 9606]
d1cn1a_ : (TYR176) (PHE213) [view usage] : b.29.1.1 |Concanavalin A-like lectins/glucanases |Concanavalin A-like lectins/glucanases |Legume lectins |Concanavalin A |Jack bean (Canavalia ensiformis) [TaxId: 3823]
d1vffa1 : (ASP260) (LEU287) [view usage] : c.1.8.4 |TIM beta/alpha-barrel |(Trans)glycosidases |Family 1 of glycosyl hydrolase |Beta-glucosidase A |Pyrococcus horikoshii [TaxId: 53953]
d2k6da_ : (ILE275) (THR295) [view usage] : b.34.2.0 |SH3-like barrel |SH3-domain |automated matches |automated matches |Human (Homo sapiens) [TaxId: 9606]
d1dm9b_ : (LYS47) (ILE67) [view usage] : d.66.1.3 |Alpha-L RNA-binding motif |Alpha-L RNA-binding motif |Heat shock protein 15 kD |Heat shock protein 15 kD |Escherichia coli [TaxId: 562]
d1s0ua1 : (GLY268) (THR297) [view usage] : b.43.3.1 |Reductase/isomerase/elongation factor common domain |Translation proteins |Elongation factors |Initiation factor eIF2 gamma subunit, domain II |Methanococcus jannaschii [TaxId: 2190]
d4kema2 : (ASN339) (LEU368) [view usage] : c.1.11.0 |TIM beta/alpha-barrel |Enolase C-terminal domain-like |automated matches |automated matches |Azospirillum sp. [TaxId: 137722]
d2c8ff_ : (LEU213) (ALA241) [view usage] : d.166.1.1 |ADP-ribosylation |ADP-ribosylation |ADP-ribosylating toxins |automated matches |Clostridium botulinum [TaxId: 1491]
d2enoa_ : (GLY10) (ARG53) [view usage] : b.36.1.0 |PDZ domain-like |PDZ domain-like |automated matches |automated matches |Human (Homo sapiens) [TaxId: 9606]
d2gtxa_ : (ASN192) (LYS218) [view usage] : d.127.1.1 |Creatinase/aminopeptidase |Creatinase/aminopeptidase |Creatinase/aminopeptidase |Methionine aminopeptidase |Escherichia coli [TaxId: 562]
List of distinct SCOP folds where this concept is used (in one or more of its domains):
c.1, b.69, b.29, c.93, b.50, b.40, d.166, d.3, d.127, c.60, b.84, b.52, e.1, b.34, d.5, b.43, g.17, b.36, g.68, d.66,
b.86