Tableau information
Concept source: d1cvma_ amino acid (a.a.) range (ASN243)(SER277)
nSSEs in this Concept: 3
String of secondary struct.elems. (SSEs) defining this concept: EEE
Each SSE's a.a.range: (start resi) (end resi) SSEtype (H=Helix; E=Strand) followed by a numeric SSE ID:
(ASN243) (ASP248) E1
(PRO257) (ALA267) E2
(LYS271) (SER277) E3
Orientation angles° of SSE-pairs; those in contact shown in bold font
E1
E2 98.9° E2
E3 -75.1° 158.1°
Footnote: Inferred from this concept's usages (listed below) was the angular variance of 1σ = ±12.7° about each orientation angle shown above.
Loci of concept usages (shown as a range of a.a. residue ids) in SCOP(v2.05) domains, along with their brief legend taken from SCOP
d2nzha_ : (GLN63) (GLU81) [view usage] : b.40.4.0 |OB-fold |Nucleic acid-binding proteins |automated matches |automated matches |Bacillus subtilis [TaxId: 1423]
d1i8dc1 : (ALA40) (LYS65) [view usage] : b.43.4.3 |Reductase/isomerase/elongation factor common domain |Riboflavin synthase domain-like |Riboflavin synthase |Riboflavin synthase |Escherichia coli [TaxId: 562]
d3bt1u3 : (GLN111) (GLY146) [view usage] : g.7.1.3 |Snake toxin-like |Snake toxin-like |Extracellular domain of cell surface receptors |Urokinase plasminogen activator surface receptor uPAR |Human (Homo sapiens) [TaxId: 9606]
d2qqia1 : (THR548) (GLY582) [view usage] : b.18.1.2 |Galactose-binding domain-like |Galactose-binding domain-like |Discoidin domain (FA58C, coagulation factor 5/8 C-terminal domain) |C2 domain of factor VIII |Human (Homo sapiens) [TaxId: 9606]
d4inla_ : (ASP48) (GLU85) [view usage] : b.47.1.0 |Trypsin-like serine proteases |Trypsin-like serine proteases |automated matches |automated matches |Staphylococcus aureus [TaxId: 93061]
d1t60a2 : (VAL117) (LEU158) [view usage] : d.169.1.6 |C-type lectin-like |C-type lectin-like |Noncollagenous (NC1) domain of collagen IV |Noncollagenous (NC1) domain of collagen IV |Cow (Bos taurus) [TaxId: 9913]
d1yx2b2 : (LYS323) (LYS356) [view usage] : b.44.2.1 |Elongation factor/aminomethyltransferase common domain |Aminomethyltransferase beta-barrel domain |Aminomethyltransferase beta-barrel domain |Glycine cleavage system T protein, GcvT |Bacillus subtilis [TaxId: 1423]
d1w6sc_ : (LEU2507) (TYR2534) [view usage] : b.70.1.1 |8-bladed beta-propeller |Quinoprotein alcohol dehydrogenase-like |Quinoprotein alcohol dehydrogenase-like |Methanol dehydrogenase, heavy chain |Methylobacterium extorquens [TaxId: 408]
d1n73c1 : (ALA339) (ILE365) [view usage] : d.171.1.1 |Fibrinogen C-terminal domain-like |Fibrinogen C-terminal domain-like |Fibrinogen C-terminal domain-like |Fibrinogen C-terminal domains |Sea lamprey (Petromyzon marinus), gamma [TaxId: 7757]
d3sudc_ : (GLY1140) (ILE1170) [view usage] : b.47.1.3 |Trypsin-like serine proteases |Trypsin-like serine proteases |Viral proteases |automated matches |Hepatitis C virus subtype 1a [TaxId: 31646]
d2nzhb_ : (LYS62) (VAL82) [view usage] : b.40.4.0 |OB-fold |Nucleic acid-binding proteins |automated matches |automated matches |Bacillus subtilis [TaxId: 1423]
d1svcp2 : (TYR44) (ALA73) [view usage] : b.2.5.3 |Common fold of diphtheria toxin/transcription factors/cytochrome f |p53-like transcription factors |Rel/Dorsal transcription factors, DNA-binding domain |p50 subunit of NF-kappa B (NFKB), N-terminal domain |Human (Homo sapiens) [TaxId: 9606]
d1fy1a_ : (GLY176) (THR204) [view usage] : b.47.1.2 |Trypsin-like serine proteases |Trypsin-like serine proteases |Eukaryotic proteases |Heparin binding protein, HBP |Human (Homo sapiens) [TaxId: 9606]
d3i2xa_ : (GLY19) (ARG50) [view usage] : b.42.4.1 |beta-Trefoil |STI-like |Kunitz (STI) inhibitors |automated matches |Winged bean (Psophocarpus tetragonolobus) [TaxId: 3891]
d2ghsa1 : (ILE251) (ARG280) [view usage] : b.68.6.1 |6-bladed beta-propeller |Calcium-dependent phosphotriesterase |SGL-like |Regucalcin |Agrobacterium tumefaciens [TaxId: 358]
d1nman_ : (GLN392) (GLY429) [view usage] : b.68.1.1 |6-bladed beta-propeller |Sialidases |Sialidases (neuraminidases) |Influenza neuraminidase |Influenza A virus, different strains [TaxId: 11320]
d2y6te_ : (VAL121) (ALA159) [view usage] : b.16.1.1 |Ecotin, trypsin inhibitor |Ecotin, trypsin inhibitor |Ecotin, trypsin inhibitor |automated matches |Yersinia pseudotuberculosis [TaxId: 502800]
d3sala_ : (VAL392) (GLY429) [view usage] : b.68.1.0 |6-bladed beta-propeller |Sialidases |automated matches |automated matches |Influenza A virus [TaxId: 385582]
d1koaa1 : (ASN6326) (THR6356) [view usage] : b.1.1.4 |Immunoglobulin-like beta-sandwich |Immunoglobulin |I set domains |Twitchin |Nematode (Caenorhabditis elegans) [TaxId: 6239]
d4dcda_ : (GLY148) (ARG176) [view usage] : b.47.1.4 |Trypsin-like serine proteases |Trypsin-like serine proteases |Viral cysteine protease of trypsin fold |automated matches |Human poliovirus 1 [TaxId: 12081]
d1azzd_ : (PHE96) (ALA132) [view usage] : b.16.1.1 |Ecotin, trypsin inhibitor |Ecotin, trypsin inhibitor |Ecotin, trypsin inhibitor |Ecotin, trypsin inhibitor |Escherichia coli [TaxId: 562]
d2p8wt3 : (VAL561) (PRO592) [view usage] : d.14.1.1 |Ribosomal protein S5 domain 2-like |Ribosomal protein S5 domain 2-like |Translational machinery components |Elongation factor 2 (eEF-2), domain IV |Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
d3hlia_ : (PRO4) (ASP37) [view usage] : b.68.6.1 |6-bladed beta-propeller |Calcium-dependent phosphotriesterase |SGL-like |automated matches |Squid (Loligo vulgaris) [TaxId: 6622]
d1azzc_ : (PHE96) (LYS135) [view usage] : b.16.1.1 |Ecotin, trypsin inhibitor |Ecotin, trypsin inhibitor |Ecotin, trypsin inhibitor |Ecotin, trypsin inhibitor |Escherichia coli [TaxId: 562]
d4a17j_ : (PRO54) (VAL82) [view usage] : i.1.1.2 |Ribosome and ribosomal fragments |Ribosome and ribosomal fragments |Large subunit |Eukaryotic, cytoplasmic (60S subunit) |Tetrahymena thermophila [TaxId: 5911]
d4nwka_ : (GLY140) (ILE170) [view usage] : b.47.1.3 |Trypsin-like serine proteases |Trypsin-like serine proteases |Viral proteases |automated matches |Hepatitis C virus subtype 1a [TaxId: 31646]
d3do7a1 : (TYR104) (GLY132) [view usage] : b.2.5.3 |Common fold of diphtheria toxin/transcription factors/cytochrome f |p53-like transcription factors |Rel/Dorsal transcription factors, DNA-binding domain |automated matches |Mouse (Mus musculus) [TaxId: 10090]
d3zc8a_ : (ARG15) (GLN47) [view usage] : b.42.4.0 |beta-Trefoil |STI-like |automated matches |automated matches |Murraya koenigii [TaxId: 311449]
d1dlpb1 : (ARG78) (PRO105) [view usage] : b.78.1.1 |beta-Prism II |alpha-D-mannose-specific plant lectins |alpha-D-mannose-specific plant lectins |Fetuin-binding protein Scafet precursor |Bluebell (Scilla campanulata) [TaxId: 81759]
d4kvnl1 : (THR76) (ILE106) [view usage] : b.1.1.0 |Immunoglobulin-like beta-sandwich |Immunoglobulin |automated matches |automated matches |Human (Homo sapiens) [TaxId: 9606]
d1vcbc_ : (LEU63) (LEU89) [view usage] : b.3.3.1 |Prealbumin-like |VHL |VHL |VHL |Human (Homo sapiens) [TaxId: 9606]
d1a12a_ : (SER387) (GLN420) [view usage] : b.69.5.1 |7-bladed beta-propeller |RCC1/BLIP-II |Regulator of chromosome condensation RCC1 |Regulator of chromosome condensation RCC1 |Human (Homo sapiens) [TaxId: 9606]
d1ofda3 : (LEU322) (ASP345) [view usage] : d.153.1.1 |Ntn hydrolase-like |N-terminal nucleophile aminohydrolases (Ntn hydrolases) |Class II glutamine amidotransferases |Alpha subunit of glutamate synthase, N-terminal domain |Synechocystis sp. [TaxId: 1143]
d2fsqa1 : (PRO212) (VAL234) [view usage] : d.61.1.4 |LigT-like |LigT-like |Atu0111-like |Putative phosphoesterase Atu0111 |Agrobacterium tumefaciens [TaxId: 358]
d1pkva_ : (ALA40) (ASP62) [view usage] : b.43.4.3 |Reductase/isomerase/elongation factor common domain |Riboflavin synthase domain-like |Riboflavin synthase |Riboflavin synthase |Escherichia coli [TaxId: 562]
d3gvka1 : (ASP455) (PRO487) [view usage] : b.68.1.2 |6-bladed beta-propeller |Sialidases |Endo-alpha-sialidase |automated matches |Enterobacteria phage [TaxId: 344021]
d1vkxb2 : (TYR341) (ALA370) [view usage] : b.2.5.3 |Common fold of diphtheria toxin/transcription factors/cytochrome f |p53-like transcription factors |Rel/Dorsal transcription factors, DNA-binding domain |p50 subunit of NF-kappa B (NFKB), N-terminal domain |Mouse (Mus musculus) [TaxId: 10090]
d4p1bh_ : (SER2) (SER33) [view usage] : b.33.1.1 |ISP domain |ISP domain |Rieske iron-sulfur protein (ISP) |Toluene-4-monooxygenase system protein C, TmoC |Pseudomonas mendocina [TaxId: 300]
d2amqa_ : (HIS134) (TYR161) [view usage] : b.47.1.4 |Trypsin-like serine proteases |Trypsin-like serine proteases |Viral cysteine protease of trypsin fold |automated matches |SARS coronavirus [TaxId: 227859]
d3iira_ : (ARG15) (GLN47) [view usage] : b.42.4.0 |beta-Trefoil |STI-like |automated matches |automated matches |Murraya koenigii [TaxId: 311449]
d1gxdc_ : (GLU61) (LEU100) [view usage] : b.40.3.1 |OB-fold |TIMP-like |Tissue inhibitor of metalloproteinases, TIMP |TIMP-2 |Human (Homo sapiens) [TaxId: 9606]
d3suea_ : (GLY1140) (ILE1170) [view usage] : b.47.1.3 |Trypsin-like serine proteases |Trypsin-like serine proteases |Viral proteases |automated matches |Hepatitis C virus subtype 1a [TaxId: 31646]
d1lqbc_ : (LEU63) (LEU89) [view usage] : b.3.3.1 |Prealbumin-like |VHL |VHL |VHL |Human (Homo sapiens) [TaxId: 9606]
d4fvba_ : (GLY111) (ALA135) [view usage] : b.47.1.0 |Trypsin-like serine proteases |Trypsin-like serine proteases |automated matches |automated matches |Human enterovirus 71 [TaxId: 39054]
d1r8na_ : (SER18) (SER53) [view usage] : b.42.4.1 |beta-Trefoil |STI-like |Kunitz (STI) inhibitors |Serine protease inhibitor DrTI |Royal poinciana (Delonix regia) [TaxId: 72433]
d1nmbn_ : (GLN392) (GLY429) [view usage] : b.68.1.1 |6-bladed beta-propeller |Sialidases |Sialidases (neuraminidases) |Influenza neuraminidase |Influenza A virus, different strains [TaxId: 11320]
d3w95a_ : (GLY112) (ALA135) [view usage] : b.47.1.0 |Trypsin-like serine proteases |Trypsin-like serine proteases |automated matches |automated matches |Human enterovirus 71 [TaxId: 103922]
d1i8da1 : (ALA40) (MET64) [view usage] : b.43.4.3 |Reductase/isomerase/elongation factor common domain |Riboflavin synthase domain-like |Riboflavin synthase |Riboflavin synthase |Escherichia coli [TaxId: 562]
d1wrua2 : (LYS53) (ARG87) [view usage] : b.106.1.1 |Phage tail proteins |Phage tail proteins |Baseplate protein-like |Baseplate protein gpP |Bacteriophage Mu [TaxId: 10677]
d1m9za_ : (LYS42) (VAL77) [view usage] : g.7.1.3 |Snake toxin-like |Snake toxin-like |Extracellular domain of cell surface receptors |TGF-beta type II receptor extracellular domain |Human (Homo sapiens) [TaxId: 9606]
d1id5i_ : (GLU93) (ALA132) [view usage] : b.16.1.1 |Ecotin, trypsin inhibitor |Ecotin, trypsin inhibitor |Ecotin, trypsin inhibitor |Ecotin, trypsin inhibitor |Escherichia coli [TaxId: 562]
d1o22a_ : (GLY57) (SER98) [view usage] : d.238.1.1 |Hypothetical protein TM0875 |Hypothetical protein TM0875 |Hypothetical protein TM0875 |Hypothetical protein TM0875 |Thermotoga maritima [TaxId: 2336]
d1ooaa2 : (TYR41) (ALA70) [view usage] : b.2.5.3 |Common fold of diphtheria toxin/transcription factors/cytochrome f |p53-like transcription factors |Rel/Dorsal transcription factors, DNA-binding domain |p50 subunit of NF-kappa B (NFKB), N-terminal domain |Mouse (Mus musculus) [TaxId: 10090]
d1gjia2 : (TYR8) (GLU37) [view usage] : b.2.5.3 |Common fold of diphtheria toxin/transcription factors/cytochrome f |p53-like transcription factors |Rel/Dorsal transcription factors, DNA-binding domain |p65 subunit of NF-kappa B (NFKB), N-terminal domain |Chicken (Gallus gallus), C-rel [TaxId: 9031]
d4kfqa_ : (ASN79) (MET109) [view usage] : c.94.1.1 |Periplasmic binding protein-like II |Periplasmic binding protein-like II |Phosphate binding protein-like |N-methyl-D-aspartate receptor subunit 1 |Norway rat (Rattus norvegicus) [TaxId: 10116]
d3osya_ : (GLY148) (ALA172) [view usage] : b.47.1.4 |Trypsin-like serine proteases |Trypsin-like serine proteases |Viral cysteine protease of trypsin fold |3C cysteine protease (picornain 3C) |Human enterovirus 71 [TaxId: 39054]
d2ey4c1 : (ASP28) (PRO57) [view usage] : b.43.3.5 |Reductase/isomerase/elongation factor common domain |Translation proteins |Gar1-like SnoRNP |Gar1 homolog PF1791 |Pyrococcus furiosus [TaxId: 2261]
d3g48a_ : (ILE63) (GLU80) [view usage] : b.40.4.4 |OB-fold |Nucleic acid-binding proteins |Myf domain |automated matches |Anthrax bacillus (Bacillus anthracis) [TaxId: 1392]
d3u1jb_ : (GLY136) (ASN169) [view usage] : b.47.1.3 |Trypsin-like serine proteases |Trypsin-like serine proteases |Viral proteases |NS3 protease |Dengue virus 3 [TaxId: 408693]
List of distinct SCOP folds where this concept is used (in one or more of its domains):
b.68, b.70, c.94, b.69, i.1, b.47, b.40, d.153, d.171, b.18, d.169, d.14, b.2, b.1, b.42, b.43, b.3, b.33, g.7, b.44,
b.16, b.106, b.78, d.61, d.238