Tableau information
Concept source: d1fknb_ amino acid (a.a.) range (ALA168)(PRO192)
nSSEs in this Concept: 3
String of secondary struct.elems. (SSEs) defining this concept: EEE
Each SSE's a.a.range: (start resi) (end resi) SSEtype (H=Helix; E=Strand) followed by a numeric SSE ID:
(ALA168) (GLY177) E1
(GLY178) (SER182) E2
(SER187) (PRO192) E3
Orientation angles° of SSE-pairs; those in contact shown in bold font
E1
E2 -136.9° E2
E3 -61.8° 150.2°
Footnote: Inferred from this concept's usages (listed below) was the angular variance of 1σ = ±7.5° about each orientation angle shown above.
Loci of concept usages (shown as a range of a.a. residue ids) in SCOP(v2.05) domains, along with their brief legend taken from SCOP
d1yf2a2 : (LEU292) (VAL313) [view usage] : d.287.1.2 |DNA methylase specificity domain |DNA methylase specificity domain |Type I restriction modification DNA specificity domain |Bipartite methylase S protein MJ0130 |Methanocaldococcus jannaschii [TaxId: 2190]
d1bjqb_ : (SER52) (ALA90) [view usage] : b.29.1.1 |Concanavalin A-like lectins/glucanases |Concanavalin A-like lectins/glucanases |Legume lectins |Legume lectin |Horse gram (Dolichos biflorus), different isoforms [TaxId: 3840]
d2mspa_ : (GLY60) (ASN95) [view usage] : b.1.11.2 |Immunoglobulin-like beta-sandwich |PapD-like |MSP-like |Major sperm protein, MSP |Pig roundworm (Ascaris suum), alpha isoform [TaxId: 6253]
d3u4xa_ : (ALA176) (ASN215) [view usage] : b.29.1.1 |Concanavalin A-like lectins/glucanases |Concanavalin A-like lectins/glucanases |Legume lectins |automated matches |Camptosema pedicellatum [TaxId: 232302]
d4nfxh_ : (MET1) (ASN32) [view usage] : d.113.1.0 |Nudix |Nudix |automated matches |automated matches |Escherichia coli [TaxId: 405955]
d1ii4a_ : (PRO29) (ARG53) [view usage] : b.42.1.1 |beta-Trefoil |Cytokine |Fibroblast growth factors (FGF) |Basic FGF (FGF2) |Human (Homo sapiens) [TaxId: 9606]
d3tpya_ : (GLN24) (PRO53) [view usage] : b.85.4.0 |beta-clip |dUTPase-like |automated matches |automated matches |Mason-pfizer monkey virus [TaxId: 11855]
d3e6da1 : (MET53) (LEU74) [view usage] : b.82.3.2 |Double-stranded beta-helix |cAMP-binding domain-like |cAMP-binding domain |Chlorophenol reduction protein CprK |Desulfitobacterium hafniense [TaxId: 49338]
d1as7a2 : (MET233) (LEU256) [view usage] : b.6.1.3 |Cupredoxin-like |Cupredoxins |Multidomain cupredoxins |Nitrite reductase, NIR |Alcaligenes faecalis, strain s-6 [TaxId: 511]
d4icqa_ : (ASP379) (PRO404) [view usage] : e.60.1.0 |Thermophilic metalloprotease-like |Thermophilic metalloprotease-like |automated matches |automated matches |Streptococcus pneumoniae [TaxId: 170187]
d1wtea_ : (GLY179) (GLY200) [view usage] : c.52.1.29 |Restriction endonuclease-like |Restriction endonuclease-like |Restriction endonuclease EcoO109IR |Restriction endonuclease EcoO109IR |Escherichia coli [TaxId: 562]
d1jala2 : (ARG343) (PHE361) [view usage] : d.15.10.2 |beta-Grasp (ubiquitin-like) |TGS-like |G domain-linked domain |YchF GTP-binding protein, C-terminal domain |Haemophilus influenzae [TaxId: 727]
d1hwwa2 : (GLY721) (LEU740) [view usage] : b.30.5.6 |Supersandwich |Galactose mutarotase-like |alpha-mannosidase, C-terminal domain |Golgi alpha-mannosidase II |Fruit fly (Drosophila melanogaster) [TaxId: 7227]
d1ni3a2 : (LEU371) (LYS388) [view usage] : d.15.10.2 |beta-Grasp (ubiquitin-like) |TGS-like |G domain-linked domain |YchF GTP-binding protein, C-terminal domain |Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]
d3dkue_ : (PHE2) (ASN32) [view usage] : d.113.1.0 |Nudix |Nudix |automated matches |automated matches |Escherichia coli [TaxId: 405955]
d2ohfa2 : (ARG369) (ASN388) [view usage] : d.15.10.0 |beta-Grasp (ubiquitin-like) |TGS-like |automated matches |automated matches |Human (Homo sapiens) [TaxId: 9606]
d4gidc_ : (ALA216) (PRO240) [view usage] : b.50.1.2 |Acid proteases |Acid proteases |Pepsin-like |beta-secretase (memapsin) |Human (Homo sapiens) [TaxId: 9606]
d2wo3a_ : (THR65) (ASP107) [view usage] : b.18.1.4 |Galactose-binding domain-like |Galactose-binding domain-like |Ephrin receptor ligand binding domain |automated matches |Human (Homo sapiens) [TaxId: 9606]
d1q55a_ : (GLY392) (HIS429) [view usage] : i.20.1.1 |Ep-cadherin |Ep-cadherin |Ep-cadherin |Ep-cadherin |Mouse (Mus musculus) [TaxId: 10090]
d3m9qa_ : (ARG5) (THR32) [view usage] : b.34.13.0 |SH3-like barrel |Chromo domain-like |automated matches |automated matches |Fruit fly (Drosophila melanogaster) [TaxId: 7227]
d2bkla1 : (ARG205) (SER235) [view usage] : b.69.7.0 |7-bladed beta-propeller |Peptidase/esterase 'gauge' domain |automated matches |automated matches |Myxococcus xanthus [TaxId: 34]
d1dzca_ : (ALA25) (GLY47) [view usage] : b.42.1.1 |beta-Trefoil |Cytokine |Fibroblast growth factors (FGF) |Acidic FGF (FGF1) |Human (Homo sapiens) [TaxId: 9606]
d3bp6a_ : (SER24) (GLN46) [view usage] : b.1.1.1 |Immunoglobulin-like beta-sandwich |Immunoglobulin |V set domains (antibody variable domain-like) |Programmed cell death protein 1, PD1, extracellular domain |Mouse (Mus musculus) [TaxId: 10090]
d4ddoa2 : (ALA393) (ARG419) [view usage] : c.95.1.0 |Thiolase-like |Thiolase-like |automated matches |automated matches |Burkholderia vietnamiensis [TaxId: 269482]
d4obca_ : (LEU362) (ASP387) [view usage] : e.8.1.4 |DNA/RNA polymerases |DNA/RNA polymerases |RNA-dependent RNA-polymerase |automated matches |Hepatitis c virus jfh-1 [TaxId: 356411]
d4icra_ : (ASP379) (PRO404) [view usage] : e.60.1.0 |Thermophilic metalloprotease-like |Thermophilic metalloprotease-like |automated matches |automated matches |Streptococcus pneumoniae [TaxId: 170187]
d4iosa_ : (SER96) (PRO110) [view usage] : b.21.1.3 |Virus attachment protein globular domain |Virus attachment protein globular domain |Lactophage receptor-binding protein head domain |automated matches |Lactococcus phage [TaxId: 35345]
d4ahia_ : (ASN68) (GLY99) [view usage] : d.5.1.1 |RNase A-like |RNase A-like |Ribonuclease A-like |Angiogenin |Human (Homo sapiens) [TaxId: 9606]
d1m3ea1 : (ILE133) (GLY166) [view usage] : c.124.1.2 |NagB/RpiA/CoA transferase-like |NagB/RpiA/CoA transferase-like |CoA transferase alpha subunit-like |Succinate:CoA transferase, N-terminal domain |Pig (Sus scrofa) [TaxId: 9823]
d3l8qa1 : (THR14) (ASP44) [view usage] : b.2.2.2 |Common fold of diphtheria toxin/transcription factors/cytochrome f |Carbohydrate-binding domain |Cellulose-binding domain family III |Cellulosomal scaffoldin adaptor protein B, ScaB |Acetivibrio cellulolyticus [TaxId: 35830]
d1ag6a_ : (PHE19) (ASP42) [view usage] : b.6.1.1 |Cupredoxin-like |Cupredoxins |Plastocyanin/azurin-like |Plastocyanin |Spinach (Spinacia oleracea) [TaxId: 3562]
d2f1aa2 : (GLY721) (LEU740) [view usage] : b.30.5.6 |Supersandwich |Galactose mutarotase-like |alpha-mannosidase, C-terminal domain |Golgi alpha-mannosidase II |Fruit fly (Drosophila melanogaster) [TaxId: 7227]
d1e63a1 : (ASN51) (SER80) [view usage] : b.43.4.2 |Reductase/isomerase/elongation factor common domain |Riboflavin synthase domain-like |Ferredoxin reductase FAD-binding domain-like |Ferredoxin reductase (flavodoxin reductase) N-terminal domain |Anabaena sp., pcc 7119 [TaxId: 1167]
d1t0bg_ : (LEU119) (GLN151) [view usage] : c.23.16.6 |Flavodoxin-like |Class I glutamine amidotransferase-like |ThuA-like |GK2113 homologue |Bacillus stearothermophilus [TaxId: 1422]
d3q62b_ : (THR115) (MET136) [view usage] : d.38.1.2 |Thioesterase/thiol ester dehydrase-isomerase |Thioesterase/thiol ester dehydrase-isomerase |beta-Hydroxydecanol thiol ester dehydrase |automated matches |Yersinia pseudotuberculosis [TaxId: 214092]
d4m44a_ : (ALA312) (ALA329) [view usage] : b.19.1.2 |Viral protein domain |Viral protein domain |Influenza hemagglutinin headpiece |Hemagglutinin |Influenza b virus [TaxId: 416659]
d1htya2 : (GLY721) (LEU740) [view usage] : b.30.5.6 |Supersandwich |Galactose mutarotase-like |alpha-mannosidase, C-terminal domain |Golgi alpha-mannosidase II |Fruit fly (Drosophila melanogaster) [TaxId: 7227]
d1yrza1 : (LEU1357) (LYS1388) [view usage] : b.29.1.23 |Concanavalin A-like lectins/glucanases |Concanavalin A-like lectins/glucanases |Beta-D-xylosidase C-terminal domain-like |Beta-D-xylosidase C-terminal domain |Bacillus halodurans [TaxId: 86665]
d1wlga_ : (GLY71) (SER94) [view usage] : b.152.1.1 |Flagellar hook protein flgE |Flagellar hook protein flgE |Flagellar hook protein flgE |Flagellar hook protein flgE |Salmonella typhimurium [TaxId: 90371]
d2b0va1 : (THR8) (ASN34) [view usage] : d.113.1.1 |Nudix |Nudix |MutT-like |Hypothetical protein NE0184 |Nitrosomonas europaea [TaxId: 915]
d1ycsb2 : (GLU481) (PRO519) [view usage] : b.34.2.1 |SH3-like barrel |SH3-domain |SH3-domain |53BP2 |Human (Homo sapiens) [TaxId: 9606]
d2eeca_ : (GLY33) (PRO61) [view usage] : b.1.18.10 |Immunoglobulin-like beta-sandwich |E set domains |Filamin repeat (rod domain) |Filamin b |Human (Homo sapiens) [TaxId: 9606]
d3qc8a2 : (ARG144) (LYS164) [view usage] : d.31.1.1 |Cdc48 domain 2-like |Cdc48 domain 2-like |Cdc48 domain 2-like |Membrane fusion atpase p97 domain 2, P97-Nc |Human (Homo sapiens) [TaxId: 9606]
List of distinct SCOP folds where this concept is used (in one or more of its domains):
e.8, b.82, b.19, b.69, b.29, b.30, e.60, c.124, b.50, c.23, c.95, b.18, b.2, b.6, b.85, b.1, b.42, d.38, b.21, c.52,
b.34, d.5, d.287, d.15, b.43, d.113, i.20, b.152, d.31