Tableau information
Concept source: d2dica1 amino acid (a.a.) range (VAL14)(GLY38)
nSSEs in this Concept: 3
String of secondary struct.elems. (SSEs) defining this concept: EEE
Each SSE's a.a.range: (start resi) (end resi) SSEtype (H=Helix; E=Strand) followed by a numeric SSE ID:
(VAL14) (GLY18) E1
(LYS22) (THR26) E2
(LYS28) (GLY38) E3
Orientation angles° of SSE-pairs; those in contact shown in bold font
E1
E2 58.6° E2
E3 151.9° -144.6°
Footnote: Inferred from this concept's usages (listed below) was the angular variance of 1σ = ±11.4° about each orientation angle shown above.
Loci of concept usages (shown as a range of a.a. residue ids) in SCOP(v2.05) domains, along with their brief legend taken from SCOP
d1urla_ : (TRP2) (PRO27) [view usage] : b.1.1.1 |Immunoglobulin-like beta-sandwich |Immunoglobulin |V set domains (antibody variable domain-like) |N-terminal domain of sialoadhesin |Mouse (Mus musculus) [TaxId: 10090]
d4e7na_ : (LYS86) (ARG107) [view usage] : b.47.1.2 |Trypsin-like serine proteases |Trypsin-like serine proteases |Eukaryotic proteases |automated matches |Halys viper (Agkistrodon halys) [TaxId: 8714]
d1w52x2 : (LYS370) (ASN392) [view usage] : b.12.1.0 |Lipase/lipooxygenase domain (PLAT/LH2 domain) |Lipase/lipooxygenase domain (PLAT/LH2 domain) |automated matches |automated matches |Horse (Equus caballus) [TaxId: 9796]
d4hv4a2 : (VAL258) (GLN277) [view usage] : c.72.2.0 |Ribokinase-like |MurD-like peptide ligases, catalytic domain |automated matches |automated matches |Yersinia pestis [TaxId: 214092]
d1gqva_ : (SER76) (ALA103) [view usage] : d.5.1.1 |RNase A-like |RNase A-like |Ribonuclease A-like |Eosinophil-derived neurotoxin (EDN) |Human (Homo sapiens) [TaxId: 9606]
d1j9ct2 : (GLU183) (MET210) [view usage] : b.1.2.1 |Immunoglobulin-like beta-sandwich |Fibronectin type III |Fibronectin type III |Extracellular region of human tissue factor |Human (Homo sapiens) [TaxId: 9606]
d1xe1a_ : (GLY63) (GLY92) [view usage] : b.43.3.1 |Reductase/isomerase/elongation factor common domain |Translation proteins |Elongation factors |Hypothetical protein PF0907 |Pyrococcus furiosus [TaxId: 2261]
d1js4a2 : (ASP535) (GLY566) [view usage] : b.2.2.2 |Common fold of diphtheria toxin/transcription factors/cytochrome f |Carbohydrate-binding domain |Cellulose-binding domain family III |Endo/exocellulase:cellobiose E-4, C-terminal domain |Thermobifida fusca [TaxId: 2021]
d4ih1a_ : (SER119) (GLY133) [view usage] : c.69.1.0 |alpha/beta-Hydrolases |alpha/beta-Hydrolases |automated matches |automated matches |Thale cress (Arabidopsis thaliana) [TaxId: 3702]
d3mgxb_ : (SER367) (GLY395) [view usage] : a.104.1.0 |Cytochrome P450 |Cytochrome P450 |automated matches |automated matches |Amycolatopsis balhimycina [TaxId: 208443]
d1doab_ : (ASP140) (THR160) [view usage] : b.1.18.8 |Immunoglobulin-like beta-sandwich |E set domains |RhoGDI-like |Rho GDP-dissociation inhibitor 1, RhoGDI |Cow (Bos taurus) [TaxId: 9913]
d1h9va1 : (ALA5) (ALA29) [view usage] : b.1.1.4 |Immunoglobulin-like beta-sandwich |Immunoglobulin |I set domains |Fc gamma receptor ectodomain (CD32) |Human (Homo sapiens), IIa [TaxId: 9606]
d2jh2b_ : (GLU7) (VAL30) [view usage] : b.2.2.2 |Common fold of diphtheria toxin/transcription factors/cytochrome f |Carbohydrate-binding domain |Cellulose-binding domain family III |automated matches |Clostridium perfringens [TaxId: 1502]
d1lcvb_ : (ALA289) (GLY313) [view usage] : b.61.1.1 |Streptavidin-like |Avidin/streptavidin |Avidin/streptavidin |Streptavidin |Streptomyces avidinii [TaxId: 1895]
d4lveb_ : (ASP301) (SER325) [view usage] : b.1.1.1 |Immunoglobulin-like beta-sandwich |Immunoglobulin |V set domains (antibody variable domain-like) |Immunoglobulin light chain kappa variable domain, VL-kappa |Human (Homo sapiens), cluster 2 [TaxId: 9606]
d1qmfa1 : (LYS670) (SER690) [view usage] : d.11.1.1 |Penicillin-binding protein 2x (pbp-2x), c-terminal domain |Penicillin-binding protein 2x (pbp-2x), c-terminal domain |Penicillin-binding protein 2x (pbp-2x), c-terminal domain |Penicillin-binding protein 2x (pbp-2x), c-terminal domain |Pneumococcus (Streptococcus pneumoniae) [TaxId: 1313]
d3p3oa_ : (PRO378) (LEU401) [view usage] : a.104.1.0 |Cytochrome P450 |Cytochrome P450 |automated matches |automated matches |Streptomyces thioluteus [TaxId: 66431]
d4omca2 : (PRO446) (LYS469) [view usage] : b.18.1.0 |Galactose-binding domain-like |Galactose-binding domain-like |automated matches |automated matches |Human (Homo sapiens) [TaxId: 9606]
d1f13a4 : (PHE339) (TYR372) [view usage] : d.3.1.4 |Cysteine proteinases |Cysteine proteinases |Transglutaminase core |Transglutaminase catalytic domain |Human (Homo sapiens), blood isozyme [TaxId: 9606]
d3lvjc_ : (GLU60) (ARG78) [view usage] : d.68.3.3 |IF3-like |SirA-like |SirA-like |automated matches |Escherichia coli [TaxId: 155864]
d2hvaa1 : (PRO17) (GLY39) [view usage] : d.60.1.4 |Probable bacterial effector-binding domain |Probable bacterial effector-binding domain |SOUL heme-binding protein |Heme-binding protein 1 |Mouse (Mus musculus) [TaxId: 10090]
d3j38y_ : (THR7) (HIS30) [view usage] : i.1.1.1 |Ribosome and ribosomal fragments |Ribosome and ribosomal fragments |Ribosome complexes |Eukaryotic, cytoplasmic (80S ribosome functional complex) |Drosophila melanogaster [TaxId: 7227]
d2co3b_ : (ASP115) (GLY141) [view usage] : b.2.3.2 |Common fold of diphtheria toxin/transcription factors/cytochrome f |Bacterial adhesins |Pilus subunits |automated matches |Salmonella typhimurium [TaxId: 99287]
d2hxda_ : (VAL96) (GLN115) [view usage] : b.85.4.1 |beta-clip |dUTPase-like |dUTPase-like |Bifunctional dCTP deaminase/dUTPase |Methanococcus jannaschii [TaxId: 2190]
d2bhua2 : (LEU582) (LEU600) [view usage] : b.71.1.1 |Glycosyl hydrolase domain |Glycosyl hydrolase domain |alpha-Amylases, C-terminal beta-sheet domain |Glycosyltrehalose trehalohydrolase |Deinococcus radiodurans [TaxId: 1299]
d1m1sa_ : (HIS140) (PRO164) [view usage] : b.1.11.2 |Immunoglobulin-like beta-sandwich |PapD-like |MSP-like |WR4 |Nematode (Caenorhabditis elegans) [TaxId: 6239]
d1nqma_ : (SER88) (GLY113) [view usage] : b.61.1.1 |Streptavidin-like |Avidin/streptavidin |Avidin/streptavidin |Streptavidin |Streptomyces avidinii [TaxId: 1895]
d4m1gl1 : (GLU1) (SER26) [view usage] : b.1.1.0 |Immunoglobulin-like beta-sandwich |Immunoglobulin |automated matches |automated matches |Mouse (Mus musculus) [TaxId: 10090]
d1ly2a2 : (GLY78) (CYS98) [view usage] : g.18.1.1 |Complement control module/SCR domain |Complement control module/SCR domain |Complement control module/SCR domain |Complement receptor 2, cr2 |Human (Homo sapiens) [TaxId: 9606]
d1ly2a2 : (ASN101) (ILE129) [view usage] : g.18.1.1 |Complement control module/SCR domain |Complement control module/SCR domain |Complement control module/SCR domain |Complement receptor 2, cr2 |Human (Homo sapiens) [TaxId: 9606]
d1jwbd_ : (LEU51) (PHE75) [view usage] : d.15.3.1 |beta-Grasp (ubiquitin-like) |MoaD/ThiS |MoaD |Molybdopterin synthase subunit MoaD |Escherichia coli [TaxId: 562]
d3hzka1 : (ASP1) (SER26) [view usage] : b.1.1.0 |Immunoglobulin-like beta-sandwich |Immunoglobulin |automated matches |automated matches |Mouse (Mus musculus) [TaxId: 10090]
d1k8ma_ : (PHE35) (TYR54) [view usage] : b.84.1.1 |Barrel-sandwich hybrid |Single hybrid motif |Biotinyl/lipoyl-carrier proteins and domains |Lipoyl domain of the mitochondrial branched-chain alpha-ketoacid dehydrogenase |Human (Homo sapiens) [TaxId: 9606]
d2jh2a1 : (GLU7) (VAL30) [view usage] : b.2.2.2 |Common fold of diphtheria toxin/transcription factors/cytochrome f |Carbohydrate-binding domain |Cellulose-binding domain family III |O-GlcNAcase NagJ |Clostridium perfringens [TaxId: 1502]
d1ghqb2 : (ASN102) (SER129) [view usage] : g.18.1.1 |Complement control module/SCR domain |Complement control module/SCR domain |Complement control module/SCR domain |Complement receptor 2, cr2 |Human (Homo sapiens) [TaxId: 9606]
d4f8eb1 : (GLY24) (ILE44) [view usage] : c.61.1.0 |PRTase-like |PRTase-like |automated matches |automated matches |Human (Homo sapiens) [TaxId: 9606]
d1fnla1 : (LYS7) (CYS29) [view usage] : b.1.1.4 |Immunoglobulin-like beta-sandwich |Immunoglobulin |I set domains |Fc gamma receptor ectodomain (CD32) |Human (Homo sapiens), III [TaxId: 9606]
d1rowa_ : (GLU42) (ALA66) [view usage] : b.1.11.2 |Immunoglobulin-like beta-sandwich |PapD-like |MSP-like |SSP-19 |Nematode (Caenorhabditis elegans) [TaxId: 6239]
d1ktkc1 : (HIS68) (PRO92) [view usage] : b.40.2.2 |OB-fold |Bacterial enterotoxins |Superantigen toxins, N-terminal domain |Streptococcal superantigen Spe-C |Streptococcus pyogenes [TaxId: 1314]
d2bg1a1 : (VAL579) (GLN606) [view usage] : e.3.1.1 |beta-lactamase/transpeptidase-like |beta-lactamase/transpeptidase-like |beta-Lactamase/D-ala carboxypeptidase |Penicillin-binding protein 1b, transpeptidase domain |Pneumococcus (Streptococcus pneumoniae) [TaxId: 1313]
d2z2lc1 : (LYS670) (SER690) [view usage] : d.11.1.1 |Penicillin-binding protein 2x (pbp-2x), c-terminal domain |Penicillin-binding protein 2x (pbp-2x), c-terminal domain |Penicillin-binding protein 2x (pbp-2x), c-terminal domain |Penicillin-binding protein 2x (pbp-2x), c-terminal domain |Pneumococcus (Streptococcus pneumoniae) [TaxId: 1313]
d2jh2c_ : (VAL8) (VAL30) [view usage] : b.2.2.2 |Common fold of diphtheria toxin/transcription factors/cytochrome f |Carbohydrate-binding domain |Cellulose-binding domain family III |automated matches |Clostridium perfringens [TaxId: 1502]
d4v19d_ : (ASP162) (GLU179) [view usage] : i.1.1.2 |Ribosome and ribosomal fragments |Ribosome and ribosomal fragments |Large subunit |Eukaryotic, mitochondrial (54S or 39S subunit) |Pig (Sus scrofa) [TaxId: 9823]
d3e2ia2 : (ARG154) (PRO181) [view usage] : g.39.1.14 |Glucocorticoid receptor-like (DNA-binding domain) |Glucocorticoid receptor-like (DNA-binding domain) |Type II thymidine kinase zinc finger |Thymidine kinase, TK1, C-terminal domain |Staphylococcus aureus [TaxId: 1280]
d1s0ua1 : (VAL300) (THR322) [view usage] : b.43.3.1 |Reductase/isomerase/elongation factor common domain |Translation proteins |Elongation factors |Initiation factor eIF2 gamma subunit, domain II |Methanococcus jannaschii [TaxId: 2190]
d1ex0b4 : (PHE339) (TYR372) [view usage] : d.3.1.4 |Cysteine proteinases |Cysteine proteinases |Transglutaminase core |Transglutaminase catalytic domain |Human (Homo sapiens), blood isozyme [TaxId: 9606]
d1edyb_ : (VAL80) (GLN100) [view usage] : b.1.29.1 |Immunoglobulin-like beta-sandwich |Macroglobulin |Alpha-macroglobulin receptor domain |alpha-1-macroglobulin |Norway rat (Rattus norvegicus) [TaxId: 10116]
List of distinct SCOP folds where this concept is used (in one or more of its domains):
e.3, c.69, a.104, d.68, i.1, b.47, c.72, b.40, b.18, d.3, b.2, b.85, b.1, b.84, c.61, d.5, b.61, d.15, b.43, b.71,
g.18, b.12, g.39, d.11, d.60