Tableau information
Concept source: d2bw7c_ amino acid (a.a.) range (MET1124)(PRO1143)
nSSEs in this Concept: 3
String of secondary struct.elems. (SSEs) defining this concept: EEE
Each SSE's a.a.range: (start resi) (end resi) SSEtype (H=Helix; E=Strand) followed by a numeric SSE ID:
(MET1124) (LEU1129) E1
(GLU1134) (PHE1138) E2
(PHE1138) (PRO1143) E3
Orientation angles° of SSE-pairs; those in contact shown in bold font
E1
E2 -141.4° E2
E3 150.6° 67.3°
Footnote: Inferred from this concept's usages (listed below) was the angular variance of 1σ = ±13.0° about each orientation angle shown above.
Loci of concept usages (shown as a range of a.a. residue ids) in SCOP(v2.05) domains, along with their brief legend taken from SCOP
d1f82a_ : (TYR198) (PRO223) [view usage] : d.92.1.7 |Zincin-like |Metalloproteases ("zincins"), catalytic domain |Clostridium neurotoxins, catalytic domain |Botulinum neurotoxin |Clostridium botulinum, serotype B [TaxId: 1491]
d2jlpa_ : (THR40) (LEU69) [view usage] : b.1.8.0 |Immunoglobulin-like beta-sandwich |Cu,Zn superoxide dismutase-like |automated matches |automated matches |Human (Homo sapiens) [TaxId: 9606]
d1js4a2 : (ILE514) (SER533) [view usage] : b.2.2.2 |Common fold of diphtheria toxin/transcription factors/cytochrome f |Carbohydrate-binding domain |Cellulose-binding domain family III |Endo/exocellulase:cellobiose E-4, C-terminal domain |Thermobifida fusca [TaxId: 2021]
d1ahka_ : (GLU102) (ILE127) [view usage] : b.1.18.7 |Immunoglobulin-like beta-sandwich |E set domains |ML domain |Major mite allergen |House-dust mite (Dermatophagoides farinae), Der f 2 [TaxId: 6954]
d2ykma1 : (GLU233) (LEU246) [view usage] : e.8.1.2 |DNA/RNA polymerases |DNA/RNA polymerases |Reverse transcriptase |automated matches |Human immunodeficiency virus type 1 bh10 [TaxId: 11678]
d1c1za1 : (GLY1) (PRO24) [view usage] : g.18.1.1 |Complement control module/SCR domain |Complement control module/SCR domain |Complement control module/SCR domain |beta2-glycoprotein I |Human (Homo sapiens) [TaxId: 9606]
d1kk6a_ : (SER16) (ASN42) [view usage] : b.81.1.3 |Single-stranded left-handed beta-helix |Trimeric LpxA-like enzymes |Galactoside acetyltransferase-like |Xenobiotic acetyltransferase |Enterococcus faecium, VAT(D) [TaxId: 1352]
d1kk6a_ : (ASN58) (ASN78) [view usage] : b.81.1.3 |Single-stranded left-handed beta-helix |Trimeric LpxA-like enzymes |Galactoside acetyltransferase-like |Xenobiotic acetyltransferase |Enterococcus faecium, VAT(D) [TaxId: 1352]
d1r6ya_ : (HIS38) (GLU64) [view usage] : d.58.4.11 |Ferredoxin-like |Dimeric alpha+beta barrel |PA3566-like |Hypothetical protein YgiN |Escherichia coli [TaxId: 562]
d2ggka1 : (ILE128) (LEU155) [view usage] : d.160.1.2 |Carbon-nitrogen hydrolase |Carbon-nitrogen hydrolase |Carbamilase |N-carbamoyl-D-aminoacid amidohydrolase |Agrobacterium radiobacter [TaxId: 358]
d3lzea_ : (ALA27) (ASN43) [view usage] : d.96.1.2 |T-fold |Tetrahydrobiopterin biosynthesis enzymes-like |6-pyruvoyl tetrahydropterin synthase |automated matches |Plasmodium vivax [TaxId: 5855]
d2d6kb_ : (THR132) (THR148) [view usage] : b.29.1.0 |Concanavalin A-like lectins/glucanases |Concanavalin A-like lectins/glucanases |automated matches |automated matches |Mouse (Mus musculus) [TaxId: 10090]
d1emsa2 : (TYR218) (PRO243) [view usage] : d.160.1.1 |Carbon-nitrogen hydrolase |Carbon-nitrogen hydrolase |Nitrilase |NIT-FHIT fusion protein, N-terminal domain |Nematode (Caenorhabditis elegans) [TaxId: 6239]
d1ojvb1 : (GLN2) (GLU25) [view usage] : g.18.1.1 |Complement control module/SCR domain |Complement control module/SCR domain |Complement control module/SCR domain |Complement decay-accelerating factor (Daf, CD55) |Human (Homo sapiens) [TaxId: 9606]
d1c1za4 : (VAL184) (TYR207) [view usage] : g.18.1.1 |Complement control module/SCR domain |Complement control module/SCR domain |Complement control module/SCR domain |beta2-glycoprotein I |Human (Homo sapiens) [TaxId: 9606]
d4k5cb_ : (ASN74) (PRO97) [view usage] : d.211.1.1 |beta-hairpin-alpha-hairpin repeat |Ankyrin repeat |Ankyrin repeat |automated matches |Escherichia coli [TaxId: 562]
d1a8da1 : (ASN206) (CYS230) [view usage] : b.29.1.6 |Concanavalin A-like lectins/glucanases |Concanavalin A-like lectins/glucanases |Clostridium neurotoxins, the second last domain |Tetanus neurotoxin |Clostridium tetani [TaxId: 1513]
d2ggla1 : (ILE128) (LEU155) [view usage] : d.160.1.2 |Carbon-nitrogen hydrolase |Carbon-nitrogen hydrolase |Carbamilase |N-carbamoyl-D-aminoacid amidohydrolase |Agrobacterium radiobacter [TaxId: 358]
d1h04p2 : (ILE67) (TYR89) [view usage] : g.18.1.1 |Complement control module/SCR domain |Complement control module/SCR domain |Complement control module/SCR domain |Complement decay-accelerating factor (Daf, CD55) |Human (Homo sapiens) [TaxId: 9606]
d1fo6a_ : (ILE128) (LEU155) [view usage] : d.160.1.2 |Carbon-nitrogen hydrolase |Carbon-nitrogen hydrolase |Carbamilase |N-carbamoyl-D-aminoacid amidohydrolase |Agrobacterium radiobacter [TaxId: 358]
d1fzac1 : (GLY352) (LYS380) [view usage] : d.171.1.1 |Fibrinogen C-terminal domain-like |Fibrinogen C-terminal domain-like |Fibrinogen C-terminal domain-like |Fibrinogen C-terminal domains |Human (Homo sapiens), gamma [TaxId: 9606]
d1wzcb_ : (SER66) (LEU92) [view usage] : c.108.1.10 |HAD-like |HAD-like |Predicted hydrolases Cof |Putative mannosyl-3-phosphoglycerate phosphatase MPGP (YedP) |Pyrococcus horikoshii [TaxId: 53953]
d3i99a1 : (GLN12) (VAL36) [view usage] : d.145.1.0 |FAD-binding/transporter-associated domain-like |FAD-binding/transporter-associated domain-like |automated matches |automated matches |Vibrio cholerae [TaxId: 243277]
d3acfa_ : (THR175) (ASN199) [view usage] : b.18.1.0 |Galactose-binding domain-like |Galactose-binding domain-like |automated matches |automated matches |Clostridium josui [TaxId: 1499]
d1kska4 : (PRO60) (ASP113) [view usage] : d.265.1.3 |Pseudouridine synthase |Pseudouridine synthase |Pseudouridine synthase RsuA/RluD |Ribosomal small subunit pseudouridine 516 synthase RsuA |Escherichia coli [TaxId: 562]
d2qxza_ : (ILE178) (TYR191) [view usage] : b.80.1.0 |Single-stranded right-handed beta-helix |Pectin lyase-like |automated matches |automated matches |Xanthomonas campestris pv. campestris [TaxId: 340]
d1om0a_ : (GLY105) (GLU128) [view usage] : c.1.8.5 |TIM beta/alpha-barrel |(Trans)glycosidases |Type II chitinase |Xylanase inhibitor protein I, XIP-I |Wheat (Triticum aestivum) [TaxId: 4565]
d1cjka_ : (GLY490) (ASN509) [view usage] : d.58.29.1 |Ferredoxin-like |Nucleotide cyclase |Adenylyl and guanylyl cyclase catalytic domain |Adenylyl cyclase VC1, domain C1a |Dog (Canis familiaris) [TaxId: 9615]
d1re3b1 : (ALA409) (PRO456) [view usage] : d.171.1.1 |Fibrinogen C-terminal domain-like |Fibrinogen C-terminal domain-like |Fibrinogen C-terminal domain-like |Fibrinogen C-terminal domains |Human (Homo sapiens), beta [TaxId: 9606]
d1defa_ : (GLU104) (GLY124) [view usage] : d.167.1.1 |Peptide deformylase |Peptide deformylase |Peptide deformylase |Peptide deformylase |Escherichia coli [TaxId: 562]
d3m0na_ : (ALA27) (ASN43) [view usage] : d.96.1.2 |T-fold |Tetrahydrobiopterin biosynthesis enzymes-like |6-pyruvoyl tetrahydropterin synthase |automated matches |Plasmodium vivax [TaxId: 5855]
d2psoa1 : (GLY1025) (PRO1058) [view usage] : d.129.3.2 |TBP-like |Bet v1-like |STAR domain |Star-related lipid transfer protein 13 |Human (Homo sapiens) [TaxId: 9606]
d3b9na_ : (HIS197) (CYS214) [view usage] : c.1.16.0 |TIM beta/alpha-barrel |Bacterial luciferase-like |automated matches |automated matches |Geobacillus thermodenitrificans [TaxId: 33940]
d2jmca_ : (PRO5) (ASN32) [view usage] : b.34.2.1 |SH3-like barrel |SH3-domain |SH3-domain |alpha-Spectrin, SH3 domain |Chicken (Gallus gallus) [TaxId: 9031]
d2bw7c_ : (MET1124) (PRO1143) [view usage] : d.58.29.1 |Ferredoxin-like |Nucleotide cyclase |Adenylyl and guanylyl cyclase catalytic domain |automated matches |Spirulina platensis [TaxId: 118562]
d1mnla_ : (ALA71) (ASN88) [view usage] : d.17.1.1 |Cystatin-like |Cystatin/monellin |Monellin |Monellin, B & A chains together |Serendipity berry (Dioscoreophyllum cumminsii) [TaxId: 3457]
d2ap9a1 : (LEU136) (VAL159) [view usage] : c.73.1.2 |Carbamate kinase-like |Carbamate kinase-like |N-acetyl-l-glutamate kinase |N-acetyl-l-glutamate kinase |Mycobacterium tuberculosis [TaxId: 1773]
d1fnma3 : (ASP492) (PRO516) [view usage] : d.14.1.1 |Ribosomal protein S5 domain 2-like |Ribosomal protein S5 domain 2-like |Translational machinery components |Elongation factor G (EF-G), domain IV |Thermus thermophilus [TaxId: 274]
d1aa9a_ : (GLU37) (GLN61) [view usage] : c.37.1.8 |P-loop containing nucleoside triphosphate hydrolases |P-loop containing nucleoside triphosphate hydrolases |G proteins |cH-p21 Ras protein |Human (Homo sapiens) [TaxId: 9606]
d1ezwa_ : (PRO146) (LYS162) [view usage] : c.1.16.3 |TIM beta/alpha-barrel |Bacterial luciferase-like |F420 dependent oxidoreductases |Coenzyme F420 dependent tetrahydromethanopterin reductase |Methanopyrus kandleri [TaxId: 2320]
d3sdoa_ : (LEU184) (ILE202) [view usage] : c.1.16.0 |TIM beta/alpha-barrel |Bacterial luciferase-like |automated matches |automated matches |Burkholderia pseudomallei [TaxId: 320372]
d2ersa1 : (ILE31) (LEU51) [view usage] : g.18.1.1 |Complement control module/SCR domain |Complement control module/SCR domain |Complement control module/SCR domain |Interleukin-15 receptor subunit alpha |Human (Homo sapiens) [TaxId: 9606]
d1fwyb1 : (VAL252) (HIS268) [view usage] : b.81.1.4 |Single-stranded left-handed beta-helix |Trimeric LpxA-like enzymes |GlmU C-terminal domain-like |N-acetylglucosamine 1-phosphate uridyltransferase GlmU, C-terminal domain |Escherichia coli [TaxId: 562]
d1daba_ : (PRO348) (THR366) [view usage] : b.80.1.7 |Single-stranded right-handed beta-helix |Pectin lyase-like |Virulence factor P.69 pertactin |Virulence factor P.69 pertactin |Bordetella pertussis [TaxId: 520]
d1bhea_ : (MET260) (LYS285) [view usage] : b.80.1.3 |Single-stranded right-handed beta-helix |Pectin lyase-like |Galacturonase |Polygalacturonase |Erwinia carotovora, subsp. carotovora [TaxId: 554]
d2qx3a_ : (ILE178) (TYR191) [view usage] : b.80.1.0 |Single-stranded right-handed beta-helix |Pectin lyase-like |automated matches |automated matches |Xanthomonas campestris pv. campestris [TaxId: 340]
d1udxa1 : (GLN111) (LEU154) [view usage] : b.117.1.1 |Obg-fold |Obg GTP-binding protein N-terminal domain |Obg GTP-binding protein N-terminal domain |Obg GTP-binding protein N-terminal domain |Thermus thermophilus [TaxId: 274]
d2wu9b1 : (GLU237) (SER259) [view usage] : c.95.1.0 |Thiolase-like |Thiolase-like |automated matches |automated matches |Thale cress (Arabidopsis thaliana) [TaxId: 3702]
d3c8nc_ : (ARG147) (ASP164) [view usage] : c.1.16.0 |TIM beta/alpha-barrel |Bacterial luciferase-like |automated matches |automated matches |Mycobacterium tuberculosis [TaxId: 83332]
d3ayxa_ : (VAL344) (HIS363) [view usage] : e.18.1.0 |HydB/Nqo4-like |HydB/Nqo4-like |automated matches |automated matches |Hydrogenovibrio marinus [TaxId: 28885]
d3og2a2 : (ASP469) (ALA489) [view usage] : b.71.1.0 |Glycosyl hydrolase domain |Glycosyl hydrolase domain |automated matches |automated matches |Trichoderma reesei [TaxId: 51453]
List of distinct SCOP folds where this concept is used (in one or more of its domains):
b.80, e.8, c.1, b.81, d.58, c.108, b.29, d.92, e.18, d.129, c.37, c.95, d.171, b.18, d.14, b.2, d.96, d.160, b.1, c.73,
d.211, d.17, d.167, b.34, d.145, b.71, g.18, d.265, b.117