Tableau information
Concept source: d3h3bd1 amino acid (a.a.) range (ALA40)(SER73)
nSSEs in this Concept: 3
String of secondary struct.elems. (SSEs) defining this concept: EEE
Each SSE's a.a.range: (start resi) (end resi) SSEtype (H=Helix; E=Strand) followed by a numeric SSE ID:
(ALA40) (PRO46) E1
(SER49) (ILE54) E2
(ARG67) (SER73) E3
Orientation angles° of SSE-pairs; those in contact shown in bold font
E1
E2 148.1° E2
E3 141.2° -62.9°
Footnote: Inferred from this concept's usages (listed below) was the angular variance of 1σ = ±5.7° about each orientation angle shown above.
Loci of concept usages (shown as a range of a.a. residue ids) in SCOP(v2.05) domains, along with their brief legend taken from SCOP
d1rama2 : (ASN155) (ARG187) [view usage] : b.2.5.3 |Common fold of diphtheria toxin/transcription factors/cytochrome f |p53-like transcription factors |Rel/Dorsal transcription factors, DNA-binding domain |p65 subunit of NF-kappa B (NFKB), N-terminal domain |Mouse (Mus musculus) [TaxId: 10090]
d1u07a_ : (TRP213) (PHE230) [view usage] : d.212.1.2 |TolA/TonB C-terminal domain |TolA/TonB C-terminal domain |TonB |TonB |Escherichia coli [TaxId: 562]
d3tssa2 : (THR96) (LYS121) [view usage] : d.15.6.1 |beta-Grasp (ubiquitin-like) |Superantigen toxins, C-terminal domain |Superantigen toxins, C-terminal domain |Toxic shock syndrome toxin-1 (TSST-1) |Staphylococcus aureus [TaxId: 1280]
d2phcb1 : (VAL161) (LEU187) [view usage] : b.62.1.4 |Cyclophilin-like |Cyclophilin-like |PH0987 C-terminal domain-like |Uncharacterized protein PH0987 |Pyrococcus horikoshii [TaxId: 53953]
d1fhha_ : (LYS2) (GLU53) [view usage] : g.41.5.1 |Rubredoxin-like |Rubredoxin-like |Rubredoxin |Rubredoxin |Clostridium pasteurianum [TaxId: 1501]
d1p98a_ : (GLN46) (VAL76) [view usage] : d.15.1.1 |beta-Grasp (ubiquitin-like) |Ubiquitin-like |Ubiquitin-related |Ubiquitin-like domain of Rad23 homolog A (Hhr23a) |Human (Homo sapiens) [TaxId: 9606]
d2b76m1 : (HIS550) (THR571) [view usage] : a.7.3.1 |Spectrin repeat-like |Succinate dehydrogenase/fumarate reductase flavoprotein C-terminal domain |Succinate dehydrogenase/fumarate reductase flavoprotein C-terminal domain |Fumarate reductase |Escherichia coli [TaxId: 562]
d2df7b_ : (THR306) (ILE337) [view usage] : b.121.4.9 |Nucleoplasmin-like/VP (viral coat and capsid proteins) |Positive stranded ssRNA viruses |Birnaviridae-like VP |automated matches |Infectious bursal disease virus [TaxId: 10995]
d1xtda2 : (GLU151) (ALA172) [view usage] : b.40.4.5 |OB-fold |Nucleic acid-binding proteins |Cold shock DNA-binding domain-like |C-terminal domain of eukaryotic initiation translation factor 5a (eIF5a) |Trypanosome (Leishmania mexicana) [TaxId: 5665]
d1q27a_ : (VAL36) (SER74) [view usage] : d.113.1.2 |Nudix |Nudix |IPP isomerase-like |Hypothetical protein DR0079 |Deinococcus radiodurans [TaxId: 1299]
d2pvxb_ : (LYS102) (ASP154) [view usage] : g.41.5.1 |Rubredoxin-like |Rubredoxin-like |Rubredoxin |Rubredoxin |Pyrococcus furiosus [TaxId: 2261]
d4hzda_ : (VAL244) (CYS259) [view usage] : b.81.1.0 |Single-stranded left-handed beta-helix |Trimeric LpxA-like enzymes |automated matches |automated matches |Brucella abortus [TaxId: 430066]
d1yk5a_ : (MET1) (GLU53) [view usage] : g.41.5.1 |Rubredoxin-like |Rubredoxin-like |Rubredoxin |Rubredoxin |Pyrococcus abyssi [TaxId: 29292]
d3bjkc_ : (GLU98) (VAL123) [view usage] : d.38.1.1 |Thioesterase/thiol ester dehydrase-isomerase |Thioesterase/thiol ester dehydrase-isomerase |4HBT-like |automated matches |Haemophilus influenzae [TaxId: 71421]
d1u07b_ : (TRP213) (PHE230) [view usage] : d.212.1.2 |TolA/TonB C-terminal domain |TolA/TonB C-terminal domain |TonB |TonB |Escherichia coli [TaxId: 562]
d2x1wa_ : (LEU185) (CYS211) [view usage] : g.17.1.0 |Cystine-knot cytokines |Cystine-knot cytokines |automated matches |automated matches |Human (Homo sapiens) [TaxId: 9606]
d1b13a_ : (LYS2) (GLU54) [view usage] : g.41.5.1 |Rubredoxin-like |Rubredoxin-like |Rubredoxin |Rubredoxin |Clostridium pasteurianum [TaxId: 1501]
d2vk9a1 : (ILE370) (SER391) [view usage] : c.68.1.22 |Nucleotide-diphospho-sugar transferases |Nucleotide-diphospho-sugar transferases |Glycosylating toxin catalytic domain-like |Alpha-toxin |Clostridium novyi [TaxId: 1542]
d1xhxa2 : (THR400) (ASP423) [view usage] : e.8.1.1 |DNA/RNA polymerases |DNA/RNA polymerases |DNA polymerase I |phi29 DNA polymerase |Bacteriophage phi-29 [TaxId: 10756]
d1bfya_ : (LYS2) (GLU54) [view usage] : g.41.5.1 |Rubredoxin-like |Rubredoxin-like |Rubredoxin |Rubredoxin |Clostridium pasteurianum [TaxId: 1501]
d5lvea_ : (TYR86) (ILE106) [view usage] : b.1.1.1 |Immunoglobulin-like beta-sandwich |Immunoglobulin |V set domains (antibody variable domain-like) |Immunoglobulin light chain kappa variable domain, VL-kappa |Human (Homo sapiens), cluster 2 [TaxId: 9606]
d4k9fa_ : (MET0) (GLU52) [view usage] : g.41.5.1 |Rubredoxin-like |Rubredoxin-like |Rubredoxin |Rubredoxin |Pyrococcus furiosus [TaxId: 2261]
d1be7a_ : (LYS2) (GLU54) [view usage] : g.41.5.1 |Rubredoxin-like |Rubredoxin-like |Rubredoxin |Rubredoxin |Clostridium pasteurianum [TaxId: 1501]
d1mvma_ : (ASN149) (SER182) [view usage] : b.121.5.2 |Nucleoplasmin-like/VP (viral coat and capsid proteins) |ssDNA viruses |Parvoviridae-like VP |Parvovirus (panleukopenia virus) capsid protein |Murine minute virus, strain i [TaxId: 10794]
d2jixb2 : (THR190) (LEU219) [view usage] : b.1.2.1 |Immunoglobulin-like beta-sandwich |Fibronectin type III |Fibronectin type III |Erythropoietin (EPO) receptor |Human (Homo sapiens) [TaxId: 9606]
d1bq8a_ : (MET1) (GLU53) [view usage] : g.41.5.1 |Rubredoxin-like |Rubredoxin-like |Rubredoxin |Rubredoxin |Pyrococcus furiosus [TaxId: 2261]
d3rzue_ : (VAL279) (PRO302) [view usage] : c.97.3.1 |Cytidine deaminase-like |JAB1/MPN domain |JAB1/MPN domain |Catalytic domain of AMSH |Human (Homo sapiens) [TaxId: 9606]
d1tyja1 : (THR145) (PRO170) [view usage] : b.2.2.2 |Common fold of diphtheria toxin/transcription factors/cytochrome f |Carbohydrate-binding domain |Cellulose-binding domain family III |Cellulosomal scaffoldin ScaA |Bacteroides cellulosolvens [TaxId: 35825]
d3c2ua1 : (GLN38) (LEU55) [view usage] : b.67.2.0 |5-bladed beta-propeller |Arabinanase/levansucrase/invertase |automated matches |automated matches |Selenomonas ruminantium [TaxId: 971]
d3d2ud1 : (ARG72) (VAL95) [view usage] : b.1.1.4 |Immunoglobulin-like beta-sandwich |Immunoglobulin |I set domains |Ligand binding domain of lir-1 (ilt2) |Human (Homo sapiens) [TaxId: 9606]
d1smma_ : (LYS2) (GLU54) [view usage] : g.41.5.1 |Rubredoxin-like |Rubredoxin-like |Rubredoxin |Rubredoxin |Clostridium pasteurianum [TaxId: 1501]
d3kyxa_ : (MET0) (LEU51) [view usage] : g.41.5.1 |Rubredoxin-like |Rubredoxin-like |Rubredoxin |Rubredoxin |Pyrococcus furiosus [TaxId: 2261]
d1l9ma4 : (ASP395) (HIS416) [view usage] : d.3.1.4 |Cysteine proteinases |Cysteine proteinases |Transglutaminase core |Transglutaminase catalytic domain |Human (Homo sapiens), TGase E3 [TaxId: 9606]
d3ryga_ : (ALA1) (LEU51) [view usage] : g.41.5.1 |Rubredoxin-like |Rubredoxin-like |Rubredoxin |Rubredoxin |Pyrococcus furiosus [TaxId: 2261]
d1uc6a_ : (LYS78) (THR104) [view usage] : b.1.2.1 |Immunoglobulin-like beta-sandwich |Fibronectin type III |Fibronectin type III |Ciliary neurotrophic factor receptor alpha |Human (Homo sapiens) [TaxId: 9606]
d1b2oa_ : (LYS2) (GLU54) [view usage] : g.41.5.1 |Rubredoxin-like |Rubredoxin-like |Rubredoxin |Rubredoxin |Clostridium pasteurianum [TaxId: 1501]
d4bgfa_ : (ARG87) (LEU113) [view usage] : d.3.1.5 |Cysteine proteinases |Cysteine proteinases |Arylamine N-acetyltransferase |automated matches |Mycobacterium tuberculosis [TaxId: 83332]
d2ij0a2 : (THR96) (LYS121) [view usage] : d.15.6.1 |beta-Grasp (ubiquitin-like) |Superantigen toxins, C-terminal domain |Superantigen toxins, C-terminal domain |Toxic shock syndrome toxin-1 (TSST-1) |Staphylococcus aureus [TaxId: 1280]
d1qgc2_ : (ARG60) (GLY89) [view usage] : i.6.1.1 |Viruses and virus-receptor complexes |Viruses and virus-receptor complexes |Viruses and virus-receptor complexes |FMDV complexed with a neutralizing Fab fragment |Foot-and-mouth disease virus [TaxId: 12110]
d3bjkd_ : (GLU98) (VAL123) [view usage] : d.38.1.1 |Thioesterase/thiol ester dehydrase-isomerase |Thioesterase/thiol ester dehydrase-isomerase |4HBT-like |automated matches |Haemophilus influenzae [TaxId: 71421]
d1xwdb1 : (ILE8) (TYR31) [view usage] : g.17.1.4 |Cystine-knot cytokines |Cystine-knot cytokines |Gonadodropin/Follitropin |Follicle stimulating hormone, follitropin, beta chain |Human (Homo sapiens) [TaxId: 9606]
d3rzuc_ : (VAL279) (PRO302) [view usage] : c.97.3.1 |Cytidine deaminase-like |JAB1/MPN domain |JAB1/MPN domain |Catalytic domain of AMSH |Human (Homo sapiens) [TaxId: 9606]
d1le9b2 : (SER208) (LYS241) [view usage] : b.2.5.3 |Common fold of diphtheria toxin/transcription factors/cytochrome f |p53-like transcription factors |Rel/Dorsal transcription factors, DNA-binding domain |p50 subunit of NF-kappa B (NFKB), N-terminal domain |Mouse (Mus musculus) [TaxId: 10090]
d4v1ai_ : (ASP241) (PRO267) [view usage] : i.1.1.2 |Ribosome and ribosomal fragments |Ribosome and ribosomal fragments |Large subunit |Eukaryotic, mitochondrial (54S or 39S subunit) |Pig (Sus scrofa) [TaxId: 9823]
d4hzca_ : (ASN243) (CYS259) [view usage] : b.81.1.0 |Single-stranded left-handed beta-helix |Trimeric LpxA-like enzymes |automated matches |automated matches |Brucella abortus [TaxId: 430066]
d3ul4a_ : (GLU122) (VAL144) [view usage] : b.2.2.0 |Common fold of diphtheria toxin/transcription factors/cytochrome f |Carbohydrate-binding domain |automated matches |automated matches |Clostridium thermocellum [TaxId: 203119]
d1vkxb2 : (SER508) (ASP539) [view usage] : b.2.5.3 |Common fold of diphtheria toxin/transcription factors/cytochrome f |p53-like transcription factors |Rel/Dorsal transcription factors, DNA-binding domain |p50 subunit of NF-kappa B (NFKB), N-terminal domain |Mouse (Mus musculus) [TaxId: 10090]
d3rhla_ : (GLN541) (VAL566) [view usage] : c.82.1.0 |ALDH-like |ALDH-like |automated matches |automated matches |Norway rat (Rattus norvegicus) [TaxId: 10116]
d2xzmg_ : (ARG117) (PRO138) [view usage] : i.1.1.3 |Ribosome and ribosomal fragments |Ribosome and ribosomal fragments |Small subunit |Eukaryotic, cytoplasmic (40S subunit) |Tetrahymena thermophila [TaxId: 5911]
d3bpnb2 : (ILE170) (ASN198) [view usage] : b.1.2.1 |Immunoglobulin-like beta-sandwich |Fibronectin type III |Fibronectin type III |automated matches |Human (Homo sapiens) [TaxId: 9606]
d4g0nb_ : (ALA97) (PHE130) [view usage] : d.15.1.5 |beta-Grasp (ubiquitin-like) |Ubiquitin-like |Ras-binding domain, RBD |c-Raf1 RBD |Human (Homo sapiens) [TaxId: 9606]
d3zixb1 : (GLU126) (ASP169) [view usage] : f.8.1.3 |Aerolisin/ETX pore-forming domain |Aerolisin/ETX pore-forming domain |Clostridium perfringens enterotoxin (CPE), pore-forming domain |automated matches |Clostridium perfringens [TaxId: 1502]
d2hqja_ : (CYS107) (ASP144) [view usage] : b.62.1.1 |Cyclophilin-like |Cyclophilin-like |Cyclophilin (peptidylprolyl isomerase) |automated matches |Leishmania major [TaxId: 5664]
d5rxna_ : (LYS2) (GLU54) [view usage] : g.41.5.1 |Rubredoxin-like |Rubredoxin-like |Rubredoxin |Rubredoxin |Clostridium pasteurianum [TaxId: 1501]
d1dx8a_ : (GLY6) (LYS57) [view usage] : g.41.5.1 |Rubredoxin-like |Rubredoxin-like |Rubredoxin |Rubredoxin |Guillardia theta [TaxId: 55529]
d1r18a_ : (GLY193) (VAL219) [view usage] : c.66.1.7 |S-adenosyl-L-methionine-dependent methyltransferases |S-adenosyl-L-methionine-dependent methyltransferases |Protein-L-isoaspartyl O-methyltransferase |Protein-L-isoaspartyl O-methyltransferase |Fruit fly (Drosophila melanogaster) [TaxId: 7227]
d1t9pa_ : (LYS2) (GLU53) [view usage] : g.41.5.1 |Rubredoxin-like |Rubredoxin-like |Rubredoxin |Rubredoxin |Clostridium pasteurianum [TaxId: 1501]
d2xzm6_ : (TYR29) (ASN81) [view usage] : i.1.1.3 |Ribosome and ribosomal fragments |Ribosome and ribosomal fragments |Small subunit |Eukaryotic, cytoplasmic (40S subunit) |Tetrahymena thermophila [TaxId: 5911]
d4gezj_ : (GLY310) (GLU343) [view usage] : b.68.1.0 |6-bladed beta-propeller |Sialidases |automated matches |automated matches |Influenza A virus [TaxId: 11320]
d1x6oa2 : (ASP143) (GLU165) [view usage] : b.40.4.5 |OB-fold |Nucleic acid-binding proteins |Cold shock DNA-binding domain-like |C-terminal domain of eukaryotic initiation translation factor 5a (eIF5a) |Leishmania infantum [TaxId: 5671]
d1yk5c_ : (ALA2) (GLU53) [view usage] : g.41.5.1 |Rubredoxin-like |Rubredoxin-like |Rubredoxin |Rubredoxin |Pyrococcus abyssi [TaxId: 29292]
d3gkwl1 : (ASP34) (GLY68) [view usage] : b.1.1.0 |Immunoglobulin-like beta-sandwich |Immunoglobulin |automated matches |automated matches |Human (Homo sapiens) [TaxId: 9606]
d3irba_ : (ILE44) (GLU75) [view usage] : b.40.4.15 |OB-fold |Nucleic acid-binding proteins |SSO2064-like |Hypothetical protein SSO2064 |Sulfolobus solfataricus [TaxId: 2287]
d4eewb_ : (GLN57) (GLU86) [view usage] : d.15.1.1 |beta-Grasp (ubiquitin-like) |Ubiquitin-like |Ubiquitin-related |automated matches |Human (Homo sapiens) [TaxId: 9606]
d3bjka_ : (GLU98) (VAL123) [view usage] : d.38.1.1 |Thioesterase/thiol ester dehydrase-isomerase |Thioesterase/thiol ester dehydrase-isomerase |4HBT-like |automated matches |Haemophilus influenzae [TaxId: 71421]
d1wgga_ : (GLN48) (LEU82) [view usage] : d.15.1.1 |beta-Grasp (ubiquitin-like) |Ubiquitin-like |Ubiquitin-related |Ubiquitin carboxyl-terminal hydrolase 14 |Mouse (Mus musculus) [TaxId: 10090]
d1fyba1 : (GLY13) (PRO51) [view usage] : g.69.1.1 |Plant proteinase inhibitors |Plant proteinase inhibitors |Plant proteinase inhibitors |Multidomain proteinase inhibitor |Winged tobacco (Nicotiana alata) [TaxId: 4087]
d3ziwb1 : (GLU126) (ASP169) [view usage] : f.8.1.3 |Aerolisin/ETX pore-forming domain |Aerolisin/ETX pore-forming domain |Clostridium perfringens enterotoxin (CPE), pore-forming domain |automated matches |Clostridium perfringens [TaxId: 1502]
d1i4ga2 : (GLU122) (LYS147) [view usage] : d.15.6.1 |beta-Grasp (ubiquitin-like) |Superantigen toxins, C-terminal domain |Superantigen toxins, C-terminal domain |Staphylococcal enterotoxin A, SEA |Staphylococcus aureus [TaxId: 1280]
d2cona1 : (ILE15) (VAL44) [view usage] : g.41.15.1 |Rubredoxin-like |NOB1 zinc finger-like |NOB1 zinc finger-like |RNA-binding protein NOB1 (Nin one binding) |Mouse (Mus musculus) [TaxId: 10090]
d1iu5a_ : (ALA1) (LEU51) [view usage] : g.41.5.1 |Rubredoxin-like |Rubredoxin-like |Rubredoxin |Rubredoxin |Pyrococcus furiosus [TaxId: 2261]
d3rzua_ : (VAL279) (PRO302) [view usage] : c.97.3.1 |Cytidine deaminase-like |JAB1/MPN domain |JAB1/MPN domain |Catalytic domain of AMSH |Human (Homo sapiens) [TaxId: 9606]
d1b2ja_ : (LYS2) (GLU54) [view usage] : g.41.5.1 |Rubredoxin-like |Rubredoxin-like |Rubredoxin |Rubredoxin |Clostridium pasteurianum [TaxId: 1501]
d2v3bb_ : (ARG2) (GLU53) [view usage] : g.41.5.1 |Rubredoxin-like |Rubredoxin-like |Rubredoxin |automated matches |Pseudomonas aeruginosa [TaxId: 208964]
d1iu6a_ : (ALA1) (LEU51) [view usage] : g.41.5.1 |Rubredoxin-like |Rubredoxin-like |Rubredoxin |Rubredoxin |Pyrococcus furiosus [TaxId: 2261]
d1bxha_ : (VAL187) (ASN216) [view usage] : b.29.1.1 |Concanavalin A-like lectins/glucanases |Concanavalin A-like lectins/glucanases |Legume lectins |Concanavalin A |Jack bean (Canavalia ensiformis) [TaxId: 3823]
d1uaia_ : (THR94) (GLY121) [view usage] : b.29.1.18 |Concanavalin A-like lectins/glucanases |Concanavalin A-like lectins/glucanases |Alginate lyase |Polyguluronate lyase |Corynebacterium sp. ALY-1 [TaxId: 101519]
List of distinct SCOP folds where this concept is used (in one or more of its domains):
b.68, e.8, b.81, i.1, c.68, b.29, c.82, b.67, c.66, i.6, b.40, b.121, d.3, b.2, b.1, c.97, d.38, b.62, d.15, d.113,
f.8, g.17, g.41, a.7, g.69, d.212