Tableau information
Concept source: d1cg1a_ amino acid (a.a.) range (GLU340)(ALA361)
nSSEs in this Concept: 3
String of secondary struct.elems. (SSEs) defining this concept: EEE
Each SSE's a.a.range: (start resi) (end resi) SSEtype (H=Helix; E=Strand) followed by a numeric SSE ID:
(GLU340) (CYS344) E1
(VAL345) (PRO350) E2
(THR356) (ALA361) E3
Orientation angles° of SSE-pairs; those in contact shown in bold font
E1
E2 -59.8° E2
E3 -60.5° 54.0°
Footnote: Inferred from this concept's usages (listed below) was the angular variance of 1σ = ±13.0° about each orientation angle shown above.
Loci of concept usages (shown as a range of a.a. residue ids) in SCOP(v2.05) domains, along with their brief legend taken from SCOP
d3kkeb_ : (GLY315) (ARG333) [view usage] : c.93.1.0 |Periplasmic binding protein-like I |Periplasmic binding protein-like I |automated matches |automated matches |Mycobacterium smegmatis [TaxId: 246196]
d1htoa2 : (GLY250) (ASP277) [view usage] : d.128.1.1 |Glutamine synthetase/guanido kinase |Glutamine synthetase/guanido kinase |Glutamine synthetase catalytic domain |Glutamine synthetase, C-terminal domain |Mycobacterium tuberculosis [TaxId: 1773]
d4mc5c1 : (THR31) (LYS47) [view usage] : b.19.1.0 |Viral protein domain |Viral protein domain |automated matches |automated matches |Influenza A virus [TaxId: 11320]
d4mzaa_ : (ASP556) (SER572) [view usage] : b.68.1.1 |6-bladed beta-propeller |Sialidases |Sialidases (neuraminidases) |automated matches |Human parainfluenza 3 virus [TaxId: 11217]
d2bw8a_ : (GLU210) (LYS226) [view usage] : b.29.1.11 |Concanavalin A-like lectins/glucanases |Concanavalin A-like lectins/glucanases |Xylanase/endoglucanase 11/12 |Family 12 endo-1,4-beta-glucanase (cellulase) catalytic domain |Rhodothermus marinus [TaxId: 29549]
d4ibod_ : (GLY86) (LYS102) [view usage] : c.2.1.0 |NAD(P)-binding Rossmann-fold domains |NAD(P)-binding Rossmann-fold domains |automated matches |automated matches |Agrobacterium fabrum [TaxId: 176299]
d1faya_ : (VAL41) (TRP59) [view usage] : b.29.1.1 |Concanavalin A-like lectins/glucanases |Concanavalin A-like lectins/glucanases |Legume lectins |Legume lectin |Winged bean (Psophocarpus tetragonolobus), acidic lectin [TaxId: 3891]
d1by5a_ : (THR295) (GLY316) [view usage] : f.4.3.3 |Transmembrane beta-barrels |Porins |Ligand-gated protein channel |Ferric hydroxamate uptake receptor FhuA |Escherichia coli [TaxId: 562]
d4odxa_ : (LYS100) (SER112) [view usage] : b.1.1.0 |Immunoglobulin-like beta-sandwich |Immunoglobulin |automated matches |automated matches |Human (Homo sapiens) [TaxId: 9606]
d3kkea_ : (GLY315) (ARG333) [view usage] : c.93.1.0 |Periplasmic binding protein-like I |Periplasmic binding protein-like I |automated matches |automated matches |Mycobacterium smegmatis [TaxId: 246196]
d1k4ra_ : (THR56) (CYS74) [view usage] : i.17.1.1 |Virus envelope proteins |Virus envelope proteins |Virus envelope proteins |Virus envelope proteins |Dengue virus [TaxId: 12637]
d1g2ba_ : (TYR13) (ASN47) [view usage] : b.34.2.1 |SH3-like barrel |SH3-domain |SH3-domain |alpha-Spectrin, SH3 domain |Chicken (Gallus gallus) [TaxId: 9031]
d1euba_ : (ASP162) (GLY180) [view usage] : d.92.1.11 |Zincin-like |Metalloproteases ("zincins"), catalytic domain |Matrix metalloproteases, catalytic domain |Collagenase-3 (MMP-13) |Human (Homo sapiens) [TaxId: 9606]
d2h3ka1 : (GLY122) (PRO142) [view usage] : b.1.28.1 |Immunoglobulin-like beta-sandwich |NEAT domain-like |NEAT domain |Iron-regulated surface determinant protein H, IsdH |Staphylococcus aureus [TaxId: 1280]
d1v05a_ : (GLY-1) (VAL2650) [view usage] : b.1.18.10 |Immunoglobulin-like beta-sandwich |E set domains |Filamin repeat (rod domain) |Filamin C |Human (Homo sapiens) [TaxId: 9606]
d1nb0a_ : (GLU100) (SER118) [view usage] : b.43.5.1 |Reductase/isomerase/elongation factor common domain |Riboflavin kinase-like |ATP-dependent riboflavin kinase-like |Riboflavin kinase |Human (Homo sapiens) [TaxId: 9606]
d1s3ra_ : (ILE402) (ASP426) [view usage] : f.9.1.0 |Perfringolysin |Perfringolysin |automated matches |automated matches |Streptococcus intermedius [TaxId: 1338]
d2cc3b_ : (GLY216) (ASN231) [view usage] : d.17.4.26 |Cystatin-like |NTF2-like |VirB8-like |automated matches |Agrobacterium tumefaciens [TaxId: 358]
d1oxua1 : (VAL281) (VAL303) [view usage] : b.40.6.3 |OB-fold |MOP-like |ABC-transporter additional domain |Glucose transport protein GlcV, N-terminal domain |Sulfolobus solfataricus [TaxId: 2287]
d4ibob_ : (GLY86) (LYS102) [view usage] : c.2.1.0 |NAD(P)-binding Rossmann-fold domains |NAD(P)-binding Rossmann-fold domains |automated matches |automated matches |Agrobacterium fabrum [TaxId: 176299]
d1dzqb_ : (ASP5) (VAL36) [view usage] : b.29.1.1 |Concanavalin A-like lectins/glucanases |Concanavalin A-like lectins/glucanases |Legume lectins |Legume lectin |Furze (Ulex europaeus), UEA-II [TaxId: 3902]
d1h0ba_ : (GLU210) (LYS226) [view usage] : b.29.1.11 |Concanavalin A-like lectins/glucanases |Concanavalin A-like lectins/glucanases |Xylanase/endoglucanase 11/12 |Family 12 endo-1,4-beta-glucanase (cellulase) catalytic domain |Rhodothermus marinus [TaxId: 29549]
d4mx6a_ : (GLY147) (ASN164) [view usage] : c.94.1.0 |Periplasmic binding protein-like II |Periplasmic binding protein-like II |automated matches |automated matches |Shewanella oneidensis [TaxId: 211586]
d2o4ea1 : (GLU27) (VAL45) [view usage] : b.2.2.2 |Common fold of diphtheria toxin/transcription factors/cytochrome f |Carbohydrate-binding domain |Cellulose-binding domain family III |O-GlcNAcase NagJ |Clostridium perfringens [TaxId: 1502]
d2cc3a1 : (GLY216) (ASN231) [view usage] : d.17.4.26 |Cystatin-like |NTF2-like |VirB8-like |Type IV secretion system protein VirB8 |Agrobacterium tumefaciens [TaxId: 358]
d3ku6a_ : (GLU304) (PRO324) [view usage] : b.19.1.2 |Viral protein domain |Viral protein domain |Influenza hemagglutinin headpiece |Hemagglutinin |Influenza A virus, different strains [TaxId: 11320]
d1f9ka_ : (VAL41) (TRP59) [view usage] : b.29.1.1 |Concanavalin A-like lectins/glucanases |Concanavalin A-like lectins/glucanases |Legume lectins |Legume lectin |Winged bean (Psophocarpus tetragonolobus), acidic lectin [TaxId: 3891]
d1svba2 : (THR56) (CYS74) [view usage] : f.10.1.1 |Viral glycoprotein, central and dimerisation domains |Viral glycoprotein, central and dimerisation domains |Viral glycoprotein, central and dimerisation domains |Envelope glycoprotein |Tick-borne encephalitis virus [TaxId: 11084]
List of distinct SCOP folds where this concept is used (in one or more of its domains):
b.68, b.19, c.94, c.2, b.29, d.92, c.93, f.4, b.40, c.37, b.2, b.1, d.17, b.34, d.128, b.43, i.17, f.10, f.9