Tableau information
Concept source: d1y7ua1 amino acid (a.a.) range (THR91)(LYS124)
nSSEs in this Concept: 3
String of secondary struct.elems. (SSEs) defining this concept: EEE
Each SSE's a.a.range: (start resi) (end resi) SSEtype (H=Helix; E=Strand) followed by a numeric SSE ID:
(THR91) (SER101) E1
(GLY107) (ILE111) E2
(SER115) (LYS124) E3
Orientation angles° of SSE-pairs; those in contact shown in bold font
E1
E2 142.2° E2
E3 139.8° -71.6°
Footnote: Inferred from this concept's usages (listed below) was the angular variance of 1σ = ±9.2° about each orientation angle shown above.
Loci of concept usages (shown as a range of a.a. residue ids) in SCOP(v2.05) domains, along with their brief legend taken from SCOP
d4ouma_ : (GLY1097) (LEU1123) [view usage] : b.22.1.0 |TNF-like |TNF-like |automated matches |automated matches |Human (Homo sapiens) [TaxId: 9606]
d1fjja_ : (HIS63) (ASP97) [view usage] : b.17.1.2 |PEBP-like |PEBP-like |Prokaryotic PEBP-like proteins |Hypothetical protein YbhB |Escherichia coli [TaxId: 562]
d1visa1 : (LEU1) (GLU38) [view usage] : d.14.1.5 |Ribosomal protein S5 domain 2-like |Ribosomal protein S5 domain 2-like |GHMP Kinase, N-terminal domain |Mevalonate kinase |Methanococcus jannaschii [TaxId: 2190]
d1jmxa4 : (LYS388) (PRO420) [view usage] : b.1.18.14 |Immunoglobulin-like beta-sandwich |E set domains |Quinohemoprotein amine dehydrogenase A chain, domains 4 and 5 |Quinohemoprotein amine dehydrogenase A chain, domains 4 and 5 |Pseudomonas putida [TaxId: 303]
d1fwka1 : (MET5) (ALA40) [view usage] : d.14.1.5 |Ribosomal protein S5 domain 2-like |Ribosomal protein S5 domain 2-like |GHMP Kinase, N-terminal domain |Homoserine kinase |Methanococcus jannaschii [TaxId: 2190]
d1d0na3 : (LYS269) (HIS309) [view usage] : d.109.1.1 |Gelsolin-like |Actin depolymerizing proteins |Gelsolin-like |Gelsolin |Horse (Equus caballus) [TaxId: 9796]
d3riya_ : (PHE162) (PRO218) [view usage] : c.31.1.5 |DHS-like NAD/FAD-binding domain |DHS-like NAD/FAD-binding domain |Sir2 family of transcriptional regulators |automated matches |Human (Homo sapiens) [TaxId: 9606]
d3tpya_ : (ILE102) (ASP133) [view usage] : b.85.4.0 |beta-clip |dUTPase-like |automated matches |automated matches |Mason-pfizer monkey virus [TaxId: 11855]
d3om5a_ : (PHE457) (GLU475) [view usage] : b.67.2.2 |5-bladed beta-propeller |Arabinanase/levansucrase/invertase |Levansucrase |Levansucrase |Bacillus megaterium [TaxId: 1404]
d1p3hb_ : (ASN17) (GLY40) [view usage] : b.35.1.1 |GroES-like |GroES-like |GroES |Chaperonin-10 (GroES) |Mycobacterium tuberculosis [TaxId: 1773]
d1b8ma_ : (ARG81) (ILE115) [view usage] : g.17.1.3 |Cystine-knot cytokines |Cystine-knot cytokines |Neurotrophin |Brain-derived neurotrophic factor, BDNF |Human (Homo sapiens) [TaxId: 9606]
d2y6te_ : (ARG78) (THR109) [view usage] : b.16.1.1 |Ecotin, trypsin inhibitor |Ecotin, trypsin inhibitor |Ecotin, trypsin inhibitor |automated matches |Yersinia pseudotuberculosis [TaxId: 502800]
d3om4a_ : (PHE457) (GLU475) [view usage] : b.67.2.2 |5-bladed beta-propeller |Arabinanase/levansucrase/invertase |Levansucrase |Levansucrase |Bacillus megaterium [TaxId: 1404]
d1vaxa2 : (PHE113) (ILE139) [view usage] : d.96.1.4 |T-fold |Tetrahydrobiopterin biosynthesis enzymes-like |Urate oxidase (uricase) |Urate oxidase (uricase) |Arthrobacter globiformis [TaxId: 1665]
d1byna_ : (GLU140) (ASP172) [view usage] : b.7.1.2 |C2 domain-like |C2 domain (Calcium/lipid-binding domain, CaLB) |Synaptotagmin-like (S variant) |Synaptogamin I |Norway rat (Rattus norvegicus) [TaxId: 10116]
d1cwpb_ : (ILE156) (GLU176) [view usage] : b.121.4.5 |Nucleoplasmin-like/VP (viral coat and capsid proteins) |Positive stranded ssRNA viruses |Bromoviridae-like VP |Cucumovirus coat protein |Cowpea chlorotic mottle virus [TaxId: 12303]
d4lxoa1 : (GLY1390) (VAL1416) [view usage] : b.1.2.1 |Immunoglobulin-like beta-sandwich |Fibronectin type III |Fibronectin type III |automated matches |Human (Homo sapiens) [TaxId: 9606]
d1azzc_ : (ASN51) (THR83) [view usage] : b.16.1.1 |Ecotin, trypsin inhibitor |Ecotin, trypsin inhibitor |Ecotin, trypsin inhibitor |Ecotin, trypsin inhibitor |Escherichia coli [TaxId: 562]
d2h2ua_ : (ASN53) (HIS87) [view usage] : b.67.3.1 |5-bladed beta-propeller |Apyrase |Apyrase |Soluble calcium-activated nucleotidase SCAN-1 |Human (Homo sapiens) [TaxId: 9606]
d2jyya_ : (GLY13) (PRO51) [view usage] : g.69.1.1 |Plant proteinase inhibitors |Plant proteinase inhibitors |Plant proteinase inhibitors |automated matches |Winged tobacco (Nicotiana alata) [TaxId: 4087]
d2hxda_ : (LYS141) (LYS168) [view usage] : b.85.4.1 |beta-clip |dUTPase-like |dUTPase-like |Bifunctional dCTP deaminase/dUTPase |Methanococcus jannaschii [TaxId: 2190]
d1e4gt1 : (ARG136) (LYS168) [view usage] : c.55.1.1 |Ribonuclease H-like motif |Actin-like ATPase domain |Actin/HSP70 |Cell division protein FtsA |Thermotoga maritima [TaxId: 2336]
d1v9fa_ : (GLY183) (GLU216) [view usage] : d.265.1.3 |Pseudouridine synthase |Pseudouridine synthase |Pseudouridine synthase RsuA/RluD |Ribosomal large subunit pseudouridine synthase D, RluD |Escherichia coli [TaxId: 562]
d2v5hg_ : (GLY41) (VAL64) [view usage] : d.58.5.1 |Ferredoxin-like |GlnB-like |Prokaryotic signal transducing protein |PII (product of glnB) |Cyanobacteria (Synechococcus sp.) pcc 7942 [TaxId: 1131]
d1ubhl_ : (ILE335) (ARG377) [view usage] : e.18.1.1 |HydB/Nqo4-like |HydB/Nqo4-like |Nickel-iron hydrogenase, large subunit |Nickel-iron hydrogenase, large subunit |Desulfovibrio vulgaris [TaxId: 881]
d1qffa_ : (HIS339) (ASP394) [view usage] : f.4.3.3 |Transmembrane beta-barrels |Porins |Ligand-gated protein channel |Ferric hydroxamate uptake receptor FhuA |Escherichia coli [TaxId: 562]
d1vi3a_ : (HIS63) (ASP97) [view usage] : b.17.1.2 |PEBP-like |PEBP-like |Prokaryotic PEBP-like proteins |Hypothetical protein YbhB |Escherichia coli [TaxId: 562]
d1zapa_ : (THR93) (SER116) [view usage] : b.50.1.2 |Acid proteases |Acid proteases |Pepsin-like |Acid protease |Yeast (Candida albicans) [TaxId: 5476]
d1jhea_ : (GLY75) (GLN99) [view usage] : b.87.1.1 |LexA/Signal peptidase |LexA/Signal peptidase |LexA-related |LexA C-terminal domain |Escherichia coli [TaxId: 562]
d3tq4a_ : (ILE102) (ASP133) [view usage] : b.85.4.0 |beta-clip |dUTPase-like |automated matches |automated matches |Mason-pfizer monkey virus [TaxId: 11855]
d2jzma_ : (GLY13) (PRO51) [view usage] : g.69.1.1 |Plant proteinase inhibitors |Plant proteinase inhibitors |Plant proteinase inhibitors |automated matches |Winged tobacco (Nicotiana alata) [TaxId: 4087]
d1cfba1 : (ASN683) (GLN709) [view usage] : b.1.2.1 |Immunoglobulin-like beta-sandwich |Fibronectin type III |Fibronectin type III |Neuroglian, two amino proximal Fn3 repeats |Fruit fly (Drosophila melanogaster) [TaxId: 7227]
d3om6a_ : (SER451) (GLU475) [view usage] : b.67.2.2 |5-bladed beta-propeller |Arabinanase/levansucrase/invertase |Levansucrase |Levansucrase |Bacillus megaterium [TaxId: 1404]
d1pjua1 : (GLY36) (PRO74) [view usage] : g.69.1.1 |Plant proteinase inhibitors |Plant proteinase inhibitors |Plant proteinase inhibitors |Wound-induced proteinase inhibitor-II |Tomato (Lycopersicon esculentum) [TaxId: 4081]
d1egja_ : (THR406) (ASP435) [view usage] : b.1.2.1 |Immunoglobulin-like beta-sandwich |Fibronectin type III |Fibronectin type III |Common beta-chain in the GM-CSF, IL-3 and IL-5 receptors |Human (Homo sapiens) [TaxId: 9606]
d3lqwa_ : (ILE88) (ARG120) [view usage] : b.85.4.0 |beta-clip |dUTPase-like |automated matches |automated matches |Entamoeba histolytica [TaxId: 294381]
d2cjtc_ : (GLU95) (PHE127) [view usage] : b.7.1.1 |C2 domain-like |C2 domain (Calcium/lipid-binding domain, CaLB) |PLC-like (P variant) |automated matches |Norway rat (Rattus norvegicus) [TaxId: 10116]
d4sgbi_ : (GLY12) (ARG51) [view usage] : g.69.1.1 |Plant proteinase inhibitors |Plant proteinase inhibitors |Plant proteinase inhibitors |Plant chymotrypsin inhibitor |Potato (Solanum tuberosum) [TaxId: 4113]
d1chvs_ : (LEU20) (THR56) [view usage] : g.7.1.1 |Snake toxin-like |Snake toxin-like |Snake venom toxins |Cardiotoxin II |Taiwan cobra (Naja naja atra) [TaxId: 8656]
d1fi4a1 : (VAL3) (ALA53) [view usage] : d.14.1.5 |Ribosomal protein S5 domain 2-like |Ribosomal protein S5 domain 2-like |GHMP Kinase, N-terminal domain |Mevalonate 5-diphosphate decarboxylase |Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
d1efxd1 : (ARG78) (ILE101) [view usage] : b.1.1.4 |Immunoglobulin-like beta-sandwich |Immunoglobulin |I set domains |Killer cell inhibitory receptor |Human (Homo sapiens), kir2dl3 [TaxId: 9606]
d1qnda_ : (LYS46) (MET75) [view usage] : d.106.1.1 |SCP-like |SCP-like |Sterol carrier protein, SCP |Sterol carrier protein 2 (SCP2) |Human (Homo sapiens) [TaxId: 9606]
d2frvb_ : (LEU318) (ARG361) [view usage] : e.18.1.1 |HydB/Nqo4-like |HydB/Nqo4-like |Nickel-iron hydrogenase, large subunit |Nickel-iron hydrogenase, large subunit |Desulfovibrio gigas [TaxId: 879]
d1al0g_ : (LYS86) (GLY118) [view usage] : b.121.5.1 |Nucleoplasmin-like/VP (viral coat and capsid proteins) |ssDNA viruses |Microviridae-like VP |Microvirus capsid proteins |Bacteriophage phi-X174 [TaxId: 10847]
d2bs71_ : (GLY17) (ASN44) [view usage] : b.2.3.5 |Common fold of diphtheria toxin/transcription factors/cytochrome f |Bacterial adhesins |F17c-type adhesin |automated matches |Escherichia coli [TaxId: 562]
d3mxga_ : (THR48) (ASN69) [view usage] : b.40.2.1 |OB-fold |Bacterial enterotoxins |Bacterial AB5 toxins, B-subunits |automated matches |Escherichia coli O157:H7 [TaxId: 83334]
d1ilta_ : (LEU121) (GLU152) [view usage] : b.42.1.2 |beta-Trefoil |Cytokine |Interleukin-1 (IL-1) |Interleukin-1 receptor antagonist protein |Human (Homo sapiens) [TaxId: 9606]
d2d8ka_ : (GLY13) (ASP42) [view usage] : b.7.1.0 |C2 domain-like |C2 domain (Calcium/lipid-binding domain, CaLB) |automated matches |automated matches |Human (Homo sapiens) [TaxId: 9606]
d1j8ra_ : (TRP1) (VAL39) [view usage] : b.2.3.3 |Common fold of diphtheria toxin/transcription factors/cytochrome f |Bacterial adhesins |PapG adhesin receptor-binding domain |PapG adhesin receptor-binding domain |Escherichia coli [TaxId: 562]
d1p851_ : (LYS9) (ALA51) [view usage] : i.1.1.1 |Ribosome and ribosomal fragments |Ribosome and ribosomal fragments |Ribosome complexes |70S ribosome functional complex |Escherichia coli [TaxId: 562]
d2rala2 : (GLU464) (LYS490) [view usage] : b.2.3.4 |Common fold of diphtheria toxin/transcription factors/cytochrome f |Bacterial adhesins |Fibrinogen-binding domain |Fibrinogen-binding adhesin SdrG |Staphylococcus epidermidis [TaxId: 1282]
d2v5hj_ : (GLY41) (VAL64) [view usage] : d.58.5.1 |Ferredoxin-like |GlnB-like |Prokaryotic signal transducing protein |PII (product of glnB) |Cyanobacteria (Synechococcus sp.) pcc 7942 [TaxId: 1131]
d1bp3b2 : (GLY375) (SER404) [view usage] : b.1.2.1 |Immunoglobulin-like beta-sandwich |Fibronectin type III |Fibronectin type III |Prolactin receptor |Human (Homo sapiens) [TaxId: 9606]
d4mo3m_ : (THR2241) (GLN2266) [view usage] : b.18.1.2 |Galactose-binding domain-like |Galactose-binding domain-like |Discoidin domain (FA58C, coagulation factor 5/8 C-terminal domain) |automated matches |Pig (Sus scrofa) [TaxId: 9823]
d1ljma_ : (GLY1143) (VAL1170) [view usage] : b.2.5.6 |Common fold of diphtheria toxin/transcription factors/cytochrome f |p53-like transcription factors |RUNT domain |Acute myeloid leukemia 1 protein (AML1), RUNT domain |Human (Homo sapiens) [TaxId: 9606]
List of distinct SCOP folds where this concept is used (in one or more of its domains):
d.58, i.1, b.67, b.50, e.18, f.4, b.40, c.55, b.18, d.14, b.121, b.2, c.31, d.96, b.85, b.1, b.42, d.38, d.106, b.22,
d.109, b.7, b.87, b.17, g.17, d.265, g.7, b.16, g.69, b.35