Tableau information
Concept source: d2fbea1 amino acid (a.a.) range (GLY63)(GLU107)
nSSEs in this Concept: 3
String of secondary struct.elems. (SSEs) defining this concept: EEE
Each SSE's a.a.range: (start resi) (end resi) SSEtype (H=Helix; E=Strand) followed by a numeric SSE ID:
(GLY63) (THR73) E1
(VAL76) (LYS83) E2
(THR102) (GLU107) E3
Orientation angles° of SSE-pairs; those in contact shown in bold font
E1
E2 164.1° E2
E3 -6.7° -166.5°
Footnote: Inferred from this concept's usages (listed below) was the angular variance of 1σ = ±13.0° about each orientation angle shown above.
Loci of concept usages (shown as a range of a.a. residue ids) in SCOP(v2.05) domains, along with their brief legend taken from SCOP
d2fsna1 : (TYR171) (GLN203) [view usage] : c.55.1.12 |Ribonuclease H-like motif |Actin-like ATPase domain |Ta0583-like |Hypothetical protein Ta0583 |Thermoplasma acidophilum [TaxId: 2303]
d1yuda1 : (SER25) (ALA59) [view usage] : b.82.1.16 |Double-stranded beta-helix |RmlC-like cupins |YML079-like |Hypothetical protein SO0799 |Shewanella oneidensis [TaxId: 70863]
d3l20b_ : (MSE57) (ASP91) [view usage] : d.32.1.0 |Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase |Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase |automated matches |automated matches |Staphylococcus aureus [TaxId: 367830]
d1n68a1 : (LEU34) (TYR69) [view usage] : b.6.1.3 |Cupredoxin-like |Cupredoxins |Multidomain cupredoxins |multi-copper oxidase CueO |Escherichia coli [TaxId: 562]
d4jull_ : (GLY286) (THR318) [view usage] : b.19.1.2 |Viral protein domain |Viral protein domain |Influenza hemagglutinin headpiece |Hemagglutinin |Influenza A virus, different strains [TaxId: 11320]
d4hoib_ : (MET92) (ASP132) [view usage] : d.110.3.0 |Profilin-like |PYP-like sensor domain (PAS domain) |automated matches |automated matches |Mouse (Mus musculus) [TaxId: 10090]
d4ltaa_ : (PHE6) (LEU27) [view usage] : b.82.1.7 |Double-stranded beta-helix |RmlC-like cupins |Glucose-6-phosphate isomerase, GPI |automated matches |Pyrococcus furiosus [TaxId: 186497]
d1j3pb_ : (PHE7) (LEU28) [view usage] : b.82.1.7 |Double-stranded beta-helix |RmlC-like cupins |Glucose-6-phosphate isomerase, GPI |Glucose-6-phosphate isomerase, GPI |Thermococcus litoralis [TaxId: 2265]
d2pvaa_ : (SER2) (VAL29) [view usage] : d.153.1.3 |Ntn hydrolase-like |N-terminal nucleophile aminohydrolases (Ntn hydrolases) |Penicillin V acylase |Penicillin V acylase |Bacillus sphaericus [TaxId: 1421]
d3suqa2 : (GLY699) (GLY729) [view usage] : e.8.1.1 |DNA/RNA polymerases |DNA/RNA polymerases |DNA polymerase I |Family B DNA polymerase |Bacteriophage RB69 [TaxId: 12353]
d4qcja_ : (GLY45) (GLY71) [view usage] : b.26.1.0 |SMAD/FHA domain |SMAD/FHA domain |automated matches |automated matches |Corynebacterium glutamicum [TaxId: 196627]
d2fgra_ : (ARG170) (ILE206) [view usage] : f.4.3.1 |Transmembrane beta-barrels |Porins |Porin |automated matches |Delftia acidovorans [TaxId: 80866]
d2z71c_ : (GLY1) (VAL29) [view usage] : d.153.1.3 |Ntn hydrolase-like |N-terminal nucleophile aminohydrolases (Ntn hydrolases) |Penicillin V acylase |automated matches |Bacillus sphaericus [TaxId: 1421]
d1x99a_ : (ALA114) (PHE144) [view usage] : b.97.1.2 |Cytolysin/lectin |Cytolysin/lectin |Fungal fruit body lectin |Lectin xcl |Xerocomus chrysenteron [TaxId: 5386]
d4ixla_ : (TYR15) (ASP41) [view usage] : b.29.1.11 |Concanavalin A-like lectins/glucanases |Concanavalin A-like lectins/glucanases |Xylanase/endoglucanase 11/12 |automated matches |Bacillus sp [TaxId: 1409]
d4luma_ : (PHE6) (LEU27) [view usage] : b.82.1.7 |Double-stranded beta-helix |RmlC-like cupins |Glucose-6-phosphate isomerase, GPI |automated matches |Pyrococcus furiosus [TaxId: 186497]
d2xt9b_ : (GLY53) (GLY79) [view usage] : b.26.1.0 |SMAD/FHA domain |SMAD/FHA domain |automated matches |automated matches |Mycobacterium smegmatis [TaxId: 246196]
d2gska_ : (GLY137) (HIS176) [view usage] : f.4.3.3 |Transmembrane beta-barrels |Porins |Ligand-gated protein channel |Outer membrane cobalamin transporter BtuB |Escherichia coli [TaxId: 562]
d1j53a_ : (ARG7) (LEU52) [view usage] : c.55.3.5 |Ribonuclease H-like motif |Ribonuclease H-like |DnaQ-like 3'-5' exonuclease |N-terminal exonuclease domain of the epsilon subunit of DNA polymerase III |Escherichia coli [TaxId: 562]
d2idoc_ : (THR6) (LEU52) [view usage] : c.55.3.5 |Ribonuclease H-like motif |Ribonuclease H-like |DnaQ-like 3'-5' exonuclease |automated matches |Escherichia coli [TaxId: 562]
d3zpyb_ : (ASP377) (LYS404) [view usage] : b.29.1.0 |Concanavalin A-like lectins/glucanases |Concanavalin A-like lectins/glucanases |automated matches |automated matches |Zobellia galactanivorans [TaxId: 63186]
d1ivta_ : (SER431) (ASN456) [view usage] : b.1.16.1 |Immunoglobulin-like beta-sandwich |Lamin A/C globular tail domain |Lamin A/C globular tail domain |Lamin A/C globular tail domain |Human (Homo sapiens) [TaxId: 9606]
d3kt9a_ : (GLN46) (ILE68) [view usage] : b.26.1.0 |SMAD/FHA domain |SMAD/FHA domain |automated matches |automated matches |Human (Homo sapiens) [TaxId: 9606]
d4llob_ : (MET92) (ASP132) [view usage] : d.110.3.0 |Profilin-like |PYP-like sensor domain (PAS domain) |automated matches |automated matches |Mouse (Mus musculus) [TaxId: 10090]
d2f1da2 : (ARG99) (PRO131) [view usage] : d.14.1.9 |Ribosomal protein S5 domain 2-like |Ribosomal protein S5 domain 2-like |Imidazole glycerol phosphate dehydratase |Imidazole glycerol phosphate dehydratase |Thale cress (Arabidopsis thaliana) [TaxId: 3702]
d3htna_ : (SER115) (HIS147) [view usage] : d.290.1.0 |AF0104/ALDC/Ptd012-like |AF0104/ALDC/Ptd012-like |automated matches |automated matches |Bacteroides thetaiotaomicron [TaxId: 226186]
d4lula_ : (PHE6) (LEU27) [view usage] : b.82.1.7 |Double-stranded beta-helix |RmlC-like cupins |Glucose-6-phosphate isomerase, GPI |automated matches |Pyrococcus furiosus [TaxId: 186497]
d2e24a3 : (LEU389) (LEU412) [view usage] : b.30.5.0 |Supersandwich |Galactose mutarotase-like |automated matches |automated matches |Bacillus sp. [TaxId: 84635]
d1sfna_ : (ALA1035) (GLU1065) [view usage] : b.82.1.11 |Double-stranded beta-helix |RmlC-like cupins |YlbA-like |Hypothetical protein DR1152 |Deinococcus radiodurans [TaxId: 1299]
d3npca_ : (ILE157) (THR183) [view usage] : d.144.1.7 |Protein kinase-like (PK-like) |Protein kinase-like (PK-like) |Protein kinases, catalytic subunit |automated matches |Human (Homo sapiens) [TaxId: 9606]
d4kl5a_ : (GLU54) (VAL77) [view usage] : b.86.1.0 |Hedgehog/intein (Hint) domain |Hedgehog/intein (Hint) domain |automated matches |automated matches |Nostoc punctiforme [TaxId: 63737]
d4gr7a_ : (GLY85) (CYS110) [view usage] : b.11.1.0 |gamma-Crystallin-like |gamma-Crystallin-like |automated matches |automated matches |Human (Homo sapiens) [TaxId: 9606]
d1kloa1 : (GLY16) (LYS40) [view usage] : g.3.11.2 |Knottins (small inhibitors, toxins, lectins) |EGF/Laminin |Laminin-type module |Laminin gamma1 chain |Mouse (Mus musculus) [TaxId: 10090]
d3pvaa_ : (CYS1) (VAL29) [view usage] : d.153.1.3 |Ntn hydrolase-like |N-terminal nucleophile aminohydrolases (Ntn hydrolases) |Penicillin V acylase |Penicillin V acylase |Bacillus sphaericus [TaxId: 1421]
d2g1la1 : (PRO499) (GLY526) [view usage] : b.26.1.2 |SMAD/FHA domain |SMAD/FHA domain |FHA domain |Kinesin-like protein kif1c |Human (Homo sapiens) [TaxId: 9606]
d2f4pa1 : (ASN20) (GLY56) [view usage] : b.82.1.9 |Double-stranded beta-helix |RmlC-like cupins |TM1287-like |Hypothetical protein TM1010 |Thermotoga maritima [TaxId: 2336]
d3npcb_ : (ILE157) (THR183) [view usage] : d.144.1.7 |Protein kinase-like (PK-like) |Protein kinase-like (PK-like) |Protein kinases, catalytic subunit |automated matches |Human (Homo sapiens) [TaxId: 9606]
d2wnxa_ : (GLY20) (LEU45) [view usage] : b.2.2.0 |Common fold of diphtheria toxin/transcription factors/cytochrome f |Carbohydrate-binding domain |automated matches |automated matches |Clostridium thermocellum [TaxId: 1515]
d4dhla2 : (VAL355) (ALA385) [view usage] : d.159.1.1 |Metallo-dependent phosphatases |Metallo-dependent phosphatases |Purple acid phosphatase-like |automated matches |French bean (Phaseolus vulgaris) [TaxId: 3885]
d4dhlc2 : (VAL355) (ALA385) [view usage] : d.159.1.1 |Metallo-dependent phosphatases |Metallo-dependent phosphatases |Purple acid phosphatase-like |automated matches |French bean (Phaseolus vulgaris) [TaxId: 3885]
d1lqya_ : (ILE59) (ALA88) [view usage] : d.167.1.1 |Peptide deformylase |Peptide deformylase |Peptide deformylase |Peptide deformylase |Bacillus stearothermophilus [TaxId: 1422]
d1nz9a_ : (THR152) (VAL174) [view usage] : b.34.5.4 |SH3-like barrel |Translation proteins SH3-like domain |N-utilization substance G protein NusG, C-terminal domain |N-utilization substance G protein NusG, C-terminal domain |Thermus thermophilus [TaxId: 274]
d1mq7a_ : (THR3) (GLU33) [view usage] : b.85.4.1 |beta-clip |dUTPase-like |dUTPase-like |Deoxyuridine 5'-triphosphate nucleotidohydrolase (dUTPase) |Mycobacterium tuberculosis, rv2697c [TaxId: 1773]
d1te5a_ : (GLU4) (TYR42) [view usage] : d.153.1.1 |Ntn hydrolase-like |N-terminal nucleophile aminohydrolases (Ntn hydrolases) |Class II glutamine amidotransferases |Hypothetical protein YafJ (PA1307) |Pseudomonas aeruginosa [TaxId: 287]
d1x99b_ : (ALA114) (PHE144) [view usage] : b.97.1.2 |Cytolysin/lectin |Cytolysin/lectin |Fungal fruit body lectin |Lectin xcl |Xerocomus chrysenteron [TaxId: 5386]
d2okla_ : (ILE59) (ALA88) [view usage] : d.167.1.1 |Peptide deformylase |Peptide deformylase |Peptide deformylase |automated matches |Bacillus cereus [TaxId: 226900]
d3mezd_ : (ASP17) (LEU38) [view usage] : b.78.1.0 |beta-Prism II |alpha-D-mannose-specific plant lectins |automated matches |automated matches |Crocus vernus [TaxId: 87752]
d1phoa_ : (TYR294) (PHE340) [view usage] : f.4.3.1 |Transmembrane beta-barrels |Porins |Porin |Porin |Escherichia coli, different sequences [TaxId: 562]
d2guia_ : (ILE5) (LEU52) [view usage] : c.55.3.5 |Ribonuclease H-like motif |Ribonuclease H-like |DnaQ-like 3'-5' exonuclease |automated matches |Escherichia coli [TaxId: 562]
d1jk6a_ : (GLY64) (THR81) [view usage] : b.9.1.1 |Neurophysin II |Neurophysin II |Neurophysin II |Neurophysin II |Cow (Bos taurus) [TaxId: 9913]
List of distinct SCOP folds where this concept is used (in one or more of its domains):
e.8, b.82, b.19, d.159, b.29, b.30, f.4, d.144, c.55, d.153, d.14, b.2, b.6, b.85, d.32, b.1, d.110, d.167, b.26, b.34,
b.11, b.97, d.290, g.3, b.78, b.86, b.9