Tableau information
Concept source: d1h8gb_ amino acid (a.a.) range (GLY240)(GLY260)
nSSEs in this Concept: 3
String of secondary struct.elems. (SSEs) defining this concept: EEE
Each SSE's a.a.range: (start resi) (end resi) SSEtype (H=Helix; E=Strand) followed by a numeric SSE ID:
(GLY240) (ALA245) E1
(LYS247) (ASN252) E2
(ALA256) (GLY260) E3
Orientation angles° of SSE-pairs; those in contact shown in bold font
E1
E2 158.0° E2
E3 -82.5° 112.7°
Footnote: Inferred from this concept's usages (listed below) was the angular variance of 1σ = ±5.2° about each orientation angle shown above.
Loci of concept usages (shown as a range of a.a. residue ids) in SCOP(v2.05) domains, along with their brief legend taken from SCOP
d3h3no2 : (MET261) (SER283) [view usage] : c.55.1.4 |Ribonuclease H-like motif |Actin-like ATPase domain |Glycerol kinase |Glycerol kinase |Enterococcus casseliflavus [TaxId: 37734]
d3r9qb_ : (VAL9) (GLY33) [view usage] : c.14.1.0 |ClpP/crotonase |ClpP/crotonase |automated matches |automated matches |Mycobacterium abscessus [TaxId: 561007]
d1bmwa_ : (GLY62) (PRO94) [view usage] : b.7.3.1 |C2 domain-like |PHL pollen allergen |PHL pollen allergen |PHL P 2 |Timothy grass (Phleum pratense) [TaxId: 15957]
d3hbwa_ : (LYS142) (PRO198) [view usage] : b.42.1.1 |beta-Trefoil |Cytokine |Fibroblast growth factors (FGF) |automated matches |Human (Homo sapiens) [TaxId: 9606]
d1g9ng_ : (ILE270) (GLY298) [view usage] : d.172.1.1 |gp120 core |gp120 core |gp120 core |gp120 core |Human immunodeficiency virus type 1 [TaxId: 11676]
d3sudc_ : (ASP1103) (SER1128) [view usage] : b.47.1.3 |Trypsin-like serine proteases |Trypsin-like serine proteases |Viral proteases |automated matches |Hepatitis C virus subtype 1a [TaxId: 31646]
d1b6fa_ : (SER39) (HIS76) [view usage] : d.129.3.1 |TBP-like |Bet v1-like |Pathogenesis-related protein 10 (PR10)-like |Major tree pollen allergen |White birch (Betula verrucosa), Bet v 1 [TaxId: 3505]
d3tssa1 : (LYS71) (THR91) [view usage] : b.40.2.2 |OB-fold |Bacterial enterotoxins |Superantigen toxins, N-terminal domain |Toxic shock syndrome toxin-1 (TSST-1) |Staphylococcus aureus [TaxId: 1280]
d1b2va_ : (ASN72) (GLY95) [view usage] : d.35.1.1 |Heme-binding protein A (HasA) |Heme-binding protein A (HasA) |Heme-binding protein A (HasA) |Heme-binding protein A (HasA) |Serratia marcescens [TaxId: 615]
d2gs5a1 : (GLY18) (VAL50) [view usage] : d.310.1.1 |VC0467-like |VC0467-like |VC0467-like |Hypothetical protein DIP2367 |Corynebacterium diphtheriae [TaxId: 1717]
d1slqc_ : (ASP384) (GLU434) [view usage] : f.47.1.1 |VP4 membrane interaction domain |VP4 membrane interaction domain |VP4 membrane interaction domain |VP4 membrane interaction domain |Rhesus rotavirus [TaxId: 10969]
d1gvmb_ : (LYS198) (ASP218) [view usage] : b.109.1.1 |beta-hairpin stack |Cell wall binding repeat |Cell wall binding repeat |Choline binding domain of autolysin C-LytA |Pneumococcus (Streptococcus pneumoniae) [TaxId: 1313]
d1h8eh_ : (SER81) (THR99) [view usage] : b.93.1.1 |Epsilon subunit of F1F0-ATP synthase N-terminal domain |Epsilon subunit of F1F0-ATP synthase N-terminal domain |Epsilon subunit of F1F0-ATP synthase N-terminal domain |Epsilon subunit of F1F0-ATP synthase N-terminal domain |Cow (Bos taurus) [TaxId: 9913]
d3sqfa_ : (PRO10) (LYS35) [view usage] : b.50.1.1 |Acid proteases |Acid proteases |Retroviral protease (retropepsin) |automated matches |Mason-pfizer monkey virus [TaxId: 11855]
d1jd0b_ : (LYS55) (ALA90) [view usage] : b.74.1.1 |Carbonic anhydrase |Carbonic anhydrase |Carbonic anhydrase |Carbonic anhydrase |Human (Homo sapiens), isozyme XII [TaxId: 9606]
d2nvpa1 : (THR43) (LEU63) [view usage] : a.102.1.8 |alpha/alpha toroid |Six-hairpin glycosidases |CPF0428-like |Hypothetical protein CPF0428 |Clostridium perfringens [TaxId: 1502]
d2gska_ : (GLY51) (ILE80) [view usage] : f.4.3.3 |Transmembrane beta-barrels |Porins |Ligand-gated protein channel |Outer membrane cobalamin transporter BtuB |Escherichia coli [TaxId: 562]
d3oojc1 : (THR67) (ASN103) [view usage] : d.153.1.0 |Ntn hydrolase-like |N-terminal nucleophile aminohydrolases (Ntn hydrolases) |automated matches |automated matches |Escherichia coli [TaxId: 562]
d1umza_ : (GLY42) (GLY69) [view usage] : b.29.1.2 |Concanavalin A-like lectins/glucanases |Concanavalin A-like lectins/glucanases |Glycosyl hydrolases family 16 |Xyloglucan endotransglycosylase |European aspen (Populus tremula) [TaxId: 113636]
d1o5ua_ : (PRO22) (TYR42) [view usage] : b.82.1.8 |Double-stranded beta-helix |RmlC-like cupins |Hypothetical protein TM1112 |Hypothetical protein TM1112 |Thermotoga maritima [TaxId: 2336]
d3zfeb_ : (CYS107) (VAL135) [view usage] : b.121.4.0 |Nucleoplasmin-like/VP (viral coat and capsid proteins) |Positive stranded ssRNA viruses |automated matches |automated matches |Human enterovirus 71 [TaxId: 39054]
d2z71a_ : (GLY1) (ASP26) [view usage] : d.153.1.3 |Ntn hydrolase-like |N-terminal nucleophile aminohydrolases (Ntn hydrolases) |Penicillin V acylase |automated matches |Bacillus sphaericus [TaxId: 1421]
d1h8ga_ : (GLY260) (ASN281) [view usage] : b.109.1.1 |beta-hairpin stack |Cell wall binding repeat |Cell wall binding repeat |Choline binding domain of autolysin C-LytA |Pneumococcus (Streptococcus pneumoniae) [TaxId: 1313]
d4iwta_ : (LYS198) (ASP218) [view usage] : b.109.1.1 |beta-hairpin stack |Cell wall binding repeat |Cell wall binding repeat |Choline binding domain of autolysin C-LytA |Pneumococcus (Streptococcus pneumoniae) [TaxId: 1313]
d2bmlb_ : (LYS198) (ASP218) [view usage] : b.109.1.1 |beta-hairpin stack |Cell wall binding repeat |Cell wall binding repeat |automated matches |Pneumococcus (Streptococcus pneumoniae) [TaxId: 1313]
d1kmpa_ : (GLY129) (ASP165) [view usage] : f.4.3.3 |Transmembrane beta-barrels |Porins |Ligand-gated protein channel |Outer membrane transporter FecA |Escherichia coli [TaxId: 562]
d1j5ha_ : (THR4) (ASP41) [view usage] : b.1.7.1 |Immunoglobulin-like beta-sandwich |Actinoxanthin-like |Actinoxanthin-like |Neocarzinostatin |Streptomyces carzinostaticus [TaxId: 1897]
d1wcsa1 : (ASN449) (PRO469) [view usage] : b.29.1.15 |Concanavalin A-like lectins/glucanases |Concanavalin A-like lectins/glucanases |Trypanosoma sialidase, C-terminal domain |Trypanosoma sialidase, C-terminal domain |Trypanosoma rangeli [TaxId: 5698]
d1j1ha_ : (ALA36) (HIS82) [view usage] : b.111.1.1 |Small protein B (SmpB) |Small protein B (SmpB) |Small protein B (SmpB) |Small protein B (SmpB) |Thermus thermophilus [TaxId: 274]
d4edaa_ : (PRO297) (ALA315) [view usage] : b.19.1.2 |Viral protein domain |Viral protein domain |Influenza hemagglutinin headpiece |Hemagglutinin |Influenza A virus, different strains [TaxId: 11320]
d4oera_ : (SER107) (PRO126) [view usage] : c.94.1.1 |Periplasmic binding protein-like II |Periplasmic binding protein-like II |Phosphate binding protein-like |Nickel-binding periplasmic protein NikA |Brucella suis [TaxId: 29461]
d1y2ia_ : (MSE1) (ALA29) [view usage] : d.230.5.1 |Dodecin subunit-like |YbjQ-like |YbjQ-like |Hypothetical protein YbjQ |Shigella flexneri [TaxId: 623]
d1k8kb1 : (GLY154) (HIS177) [view usage] : c.55.1.1 |Ribonuclease H-like motif |Actin-like ATPase domain |Actin/HSP70 |Actin-related protein 2, Arp2 |Cow (Bos taurus) [TaxId: 9913]
d2biba1 : (GLY313) (GLY336) [view usage] : b.109.1.1 |beta-hairpin stack |Cell wall binding repeat |Cell wall binding repeat |Teichoic acid phosphorylcholine esterase Pce (LytD), C-terminal domain |Pneumococcus (Streptococcus pneumoniae) [TaxId: 1313]
d2biba1 : (GLY336) (ASN356) [view usage] : b.109.1.1 |beta-hairpin stack |Cell wall binding repeat |Cell wall binding repeat |Teichoic acid phosphorylcholine esterase Pce (LytD), C-terminal domain |Pneumococcus (Streptococcus pneumoniae) [TaxId: 1313]
d2biba1 : (GLY497) (ASN517) [view usage] : b.109.1.1 |beta-hairpin stack |Cell wall binding repeat |Cell wall binding repeat |Teichoic acid phosphorylcholine esterase Pce (LytD), C-terminal domain |Pneumococcus (Streptococcus pneumoniae) [TaxId: 1313]
d2f3va_ : (GLU75) (ALA102) [view usage] : b.40.1.1 |OB-fold |Staphylococcal nuclease |Staphylococcal nuclease |Staphylococcal nuclease |Staphylococcus aureus [TaxId: 1280]
d1h8gb_ : (GLY240) (GLY260) [view usage] : b.109.1.1 |beta-hairpin stack |Cell wall binding repeat |Cell wall binding repeat |Choline binding domain of autolysin C-LytA |Pneumococcus (Streptococcus pneumoniae) [TaxId: 1313]
d1n10a1 : (PHE1210) (SER1240) [view usage] : b.7.3.1 |C2 domain-like |PHL pollen allergen |PHL pollen allergen |PHL P 1 C-terminal domain |Timothy grass (Phleum pratense) [TaxId: 15957]
d31bia_ : (PHE99) (PHE150) [view usage] : b.42.1.2 |beta-Trefoil |Cytokine |Interleukin-1 (IL-1) |Interleukin-1beta |Human (Homo sapiens) [TaxId: 9606]
d1mufa1 : (GLY84) (ASP112) [view usage] : b.76.2.1 |open-sided beta-meander |Histone H3 K4-specific methyltransferase SET7/9 N-terminal domain |Histone H3 K4-specific methyltransferase SET7/9 N-terminal domain |Histone H3 K4-specific methyltransferase SET7/9 N-terminal domain |Human (Homo sapiens) [TaxId: 9606]
d1a2yc_ : (GLN41) (GLY67) [view usage] : d.2.1.2 |Lysozyme-like |Lysozyme-like |C-type lysozyme |Lysozyme |Chicken (Gallus gallus) [TaxId: 9031]
d1xbra_ : (ARG99) (PRO118) [view usage] : b.2.5.4 |Common fold of diphtheria toxin/transcription factors/cytochrome f |p53-like transcription factors |T-box |T domain from Brachyury transcription factor |African clawed frog (Xenopus laevis) [TaxId: 8355]
d2c12a2 : (LEU229) (PRO253) [view usage] : e.6.1.1 |Acyl-CoA dehydrogenase NM domain-like |Acyl-CoA dehydrogenase NM domain-like |Medium chain acyl-CoA dehydrogenase, NM (N-terminal and middle) domains |Nitroalkane oxidase |Fungus (Fusarium oxysporum) [TaxId: 5507]
d1ybja_ : (ASN71) (GLY94) [view usage] : d.35.1.1 |Heme-binding protein A (HasA) |Heme-binding protein A (HasA) |Heme-binding protein A (HasA) |Heme-binding protein A (HasA) |Serratia marcescens [TaxId: 615]
d3r9qc_ : (VAL9) (GLY33) [view usage] : c.14.1.0 |ClpP/crotonase |ClpP/crotonase |automated matches |automated matches |Mycobacterium abscessus [TaxId: 561007]
d3pepa_ : (GLY168) (SER196) [view usage] : b.50.1.2 |Acid proteases |Acid proteases |Pepsin-like |Pepsin(ogen) |Pig (Sus scrofa) [TaxId: 9823]
d1e79h2 : (SER81) (THR99) [view usage] : b.93.1.1 |Epsilon subunit of F1F0-ATP synthase N-terminal domain |Epsilon subunit of F1F0-ATP synthase N-terminal domain |Epsilon subunit of F1F0-ATP synthase N-terminal domain |Epsilon subunit of F1F0-ATP synthase N-terminal domain |Cow (Bos taurus) [TaxId: 9913]
d1niaa2 : (ARG240) (TYR263) [view usage] : b.6.1.3 |Cupredoxin-like |Cupredoxins |Multidomain cupredoxins |Nitrite reductase, NIR |Achromobacter cycloclastes [TaxId: 223]
d2yqga_ : (PRO84) (PRO118) [view usage] : b.1.6.0 |Immunoglobulin-like beta-sandwich |Cadherin-like |automated matches |automated matches |Human (Homo sapiens) [TaxId: 9606]
d1jcza_ : (LYS55) (ALA90) [view usage] : b.74.1.1 |Carbonic anhydrase |Carbonic anhydrase |Carbonic anhydrase |Carbonic anhydrase |Human (Homo sapiens), isozyme XII [TaxId: 9606]
d1mm4a_ : (GLY65) (GLY107) [view usage] : f.4.1.2 |Transmembrane beta-barrels |OMPA-like |Outer membrane enzyme PagP |Outer membrane enzyme PagP |Escherichia coli [TaxId: 562]
d1evta_ : (LYS10) (ARG35) [view usage] : b.42.1.1 |beta-Trefoil |Cytokine |Fibroblast growth factors (FGF) |Acidic FGF (FGF1) |Human (Homo sapiens) [TaxId: 9606]
d3dxmb_ : (GLY154) (HIS177) [view usage] : c.55.1.1 |Ribonuclease H-like motif |Actin-like ATPase domain |Actin/HSP70 |Actin-related protein 2, Arp2 |Cow (Bos taurus) [TaxId: 9913]
d3sqfb_ : (PRO10) (LYS35) [view usage] : b.50.1.1 |Acid proteases |Acid proteases |Retroviral protease (retropepsin) |automated matches |Mason-pfizer monkey virus [TaxId: 11855]
d3gcfa2 : (GLU242) (ALA263) [view usage] : d.129.3.0 |TBP-like |Bet v1-like |automated matches |automated matches |Nocardioides aromaticivorans [TaxId: 200618]
d3r9qa_ : (VAL9) (GLY33) [view usage] : c.14.1.0 |ClpP/crotonase |ClpP/crotonase |automated matches |automated matches |Mycobacterium abscessus [TaxId: 561007]
List of distinct SCOP folds where this concept is used (in one or more of its domains):
b.82, b.19, c.94, b.29, b.74, b.47, b.76, a.102, c.14, b.50, d.129, f.4, b.40, c.55, e.6, d.2, d.153, b.121, b.2, b.6,
b.1, b.42, b.109, b.7, f.47, d.230, d.310, b.93, d.35, d.172, b.111