Tableau information
Concept source: d4rqqa1 amino acid (a.a.) range (VAL3)(SER26)
nSSEs in this Concept: 3
String of secondary struct.elems. (SSEs) defining this concept: EEE
Each SSE's a.a.range: (start resi) (end resi) SSEtype (H=Helix; E=Strand) followed by a numeric SSE ID:
(VAL3) (PRO8) E1
(HIS9) (THR14) E2
(GLU17) (SER26) E3
Orientation angles° of SSE-pairs; those in contact shown in bold font
E1
E2 30.1° E2
E3 161.2° 163.2°
Footnote: Inferred from this concept's usages (listed below) was the angular variance of 1σ = ±7.6° about each orientation angle shown above.
Loci of concept usages (shown as a range of a.a. residue ids) in SCOP(v2.05) domains, along with their brief legend taken from SCOP
d4fp8d_ : (PHE125) (PRO169) [view usage] : b.19.1.2 |Viral protein domain |Viral protein domain |Influenza hemagglutinin headpiece |Hemagglutinin |Influenza A virus, different strains [TaxId: 11320]
d1umha_ : (LEU235) (ASP260) [view usage] : b.18.1.21 |Galactose-binding domain-like |Galactose-binding domain-like |F-box associated region, FBA |F-box only protein 2 |Mouse (Mus musculus) [TaxId: 10090]
d2nmsa_ : (GLN21) (ARG43) [view usage] : b.1.1.0 |Immunoglobulin-like beta-sandwich |Immunoglobulin |automated matches |automated matches |Human (Homo sapiens) [TaxId: 9606]
d1oyvi1 : (PRO16) (CYS73) [view usage] : g.69.1.1 |Plant proteinase inhibitors |Plant proteinase inhibitors |Plant proteinase inhibitors |Wound-induced proteinase inhibitor-II |Tomato (Lycopersicon esculentum) [TaxId: 4081]
d1iw7c_ : (TYR90) (LEU115) [view usage] : e.29.1.1 |beta and beta-prime subunits of DNA dependent RNA-polymerase |beta and beta-prime subunits of DNA dependent RNA-polymerase |RNA-polymerase beta |RNA-polymerase beta |Thermus thermophilus [TaxId: 274]
d3soza_ : (MSE1) (ALA32) [view usage] : c.23.16.9 |Flavodoxin-like |Class I glutamine amidotransferase-like |STM3548-like |automated matches |Salmonella enterica [TaxId: 99287]
d1ynjc1 : (TYR90) (GLY116) [view usage] : e.29.1.1 |beta and beta-prime subunits of DNA dependent RNA-polymerase |beta and beta-prime subunits of DNA dependent RNA-polymerase |RNA-polymerase beta |RNA-polymerase beta |Thermus aquaticus [TaxId: 271]
d2h7zb1 : (LEU9) (GLY52) [view usage] : g.7.1.1 |Snake toxin-like |Snake toxin-like |Snake venom toxins |Irditoxin subunit B |Brown tree snake (Boiga irregularis) [TaxId: 92519]
d1fl5a1 : (GLU1) (SER25) [view usage] : b.1.1.1 |Immunoglobulin-like beta-sandwich |Immunoglobulin |V set domains (antibody variable domain-like) |Immunoglobulin light chain kappa variable domain, VL-kappa |Mouse (Mus musculus), cluster 1.1 [TaxId: 10090]
d1i1ra1 : (CYS6) (CYS26) [view usage] : b.1.2.1 |Immunoglobulin-like beta-sandwich |Fibronectin type III |Fibronectin type III |Cytokine receptor gp130 cytokine-binding domains |Human (Homo sapiens) [TaxId: 9606]
d1iwab_ : (LYS121) (SER144) [view usage] : d.73.1.1 |RuBisCO, small subunit |RuBisCO, small subunit |RuBisCO, small subunit |Ribulose 1,5-bisphosphate carboxylase-oxygenase |Galdieria partita [TaxId: 83374]
d1ek3a_ : (ASP1) (SER26) [view usage] : b.1.1.1 |Immunoglobulin-like beta-sandwich |Immunoglobulin |V set domains (antibody variable domain-like) |Immunoglobulin light chain kappa variable domain, VL-kappa |Human (Homo sapiens), cluster 2 [TaxId: 9606]
d3bp6a_ : (SER1) (SER24) [view usage] : b.1.1.1 |Immunoglobulin-like beta-sandwich |Immunoglobulin |V set domains (antibody variable domain-like) |Programmed cell death protein 1, PD1, extracellular domain |Mouse (Mus musculus) [TaxId: 10090]
d4howa2 : (ILE570) (PRO600) [view usage] : b.71.1.0 |Glycosyl hydrolase domain |Glycosyl hydrolase domain |automated matches |automated matches |Erwinia rhapontici [TaxId: 55212]
d2bfvl_ : (ASP1) (ARG24) [view usage] : b.1.1.1 |Immunoglobulin-like beta-sandwich |Immunoglobulin |V set domains (antibody variable domain-like) |Immunoglobulin light chain kappa variable domain, VL-kappa |Mouse (Mus musculus), cluster 1.1 [TaxId: 10090]
d2esra1 : (THR160) (ASN179) [view usage] : c.66.1.46 |S-adenosyl-L-methionine-dependent methyltransferases |S-adenosyl-L-methionine-dependent methyltransferases |YhhF-like |Putative methyltransferase SPy1538 |Streptococcus pyogenes [TaxId: 1314]
d1xx5a1 : (TYR125) (CYS148) [view usage] : d.111.1.1 |PR-1-like |PR-1-like |PR-1-like |automated matches |Chinese cobra (Naja atra) [TaxId: 8656]
d1xeda_ : (PRO3) (PRO25) [view usage] : b.1.1.1 |Immunoglobulin-like beta-sandwich |Immunoglobulin |V set domains (antibody variable domain-like) |Polymeric-immunoglobulin receptor, PIGR |Human (Homo sapiens) [TaxId: 9606]
d1tzbb_ : (ARG17) (ILE34) [view usage] : c.80.1.1 |SIS domain |SIS domain |double-SIS domain |Glucose-6-phosphate isomerase, conjectural |Pyrobaculum aerophilum [TaxId: 13773]
d4b2oa_ : (LYS231) (ASN257) [view usage] : d.159.1.0 |Metallo-dependent phosphatases |Metallo-dependent phosphatases |automated matches |automated matches |Bacillus subtilis [TaxId: 224308]
d1dksb_ : (GLN5) (LEU24) [view usage] : d.97.1.1 |Cell cycle regulatory proteins |Cell cycle regulatory proteins |Cell cycle regulatory proteins |CksHs1 |Human (Homo sapiens) [TaxId: 9606]
d1cjyb1 : (GLY1115) (CYS1141) [view usage] : b.7.1.1 |C2 domain-like |C2 domain (Calcium/lipid-binding domain, CaLB) |PLC-like (P variant) |Domain from cytosolic phospholipase A2 |Human (Homo sapiens) [TaxId: 9606]
d1ucbl1 : (MET4) (SER26) [view usage] : b.1.1.1 |Immunoglobulin-like beta-sandwich |Immunoglobulin |V set domains (antibody variable domain-like) |Immunoglobulin light chain kappa variable domain, VL-kappa |Mouse (Mus musculus), cluster 1.1 [TaxId: 10090]
d4k4hi3 : (THR458) (GLY475) [view usage] : d.218.1.2 |Nucleotidyltransferase |Nucleotidyltransferase |DNA polymerase beta-like |DNA polymerase lambda |Human (Homo sapiens) [TaxId: 9606]
d3eb7a2 : (TYR405) (VAL424) [view usage] : b.77.2.0 |beta-Prism I |delta-Endotoxin (insectocide), middle domain |automated matches |automated matches |Bacillus thuringiensis [TaxId: 1428]
d1bwvs_ : (LYS121) (SER144) [view usage] : d.73.1.1 |RuBisCO, small subunit |RuBisCO, small subunit |RuBisCO, small subunit |Ribulose 1,5-bisphosphate carboxylase-oxygenase |Galdieria partita [TaxId: 83374]
d2gk3e_ : (LYS9) (ALA39) [view usage] : c.23.16.9 |Flavodoxin-like |Class I glutamine amidotransferase-like |STM3548-like |Putative cytoplasmic protein STM3548 |Salmonella typhimurium [TaxId: 90371]
d1le5a2 : (ASN155) (ASP185) [view usage] : b.2.5.3 |Common fold of diphtheria toxin/transcription factors/cytochrome f |p53-like transcription factors |Rel/Dorsal transcription factors, DNA-binding domain |p65 subunit of NF-kappa B (NFKB), N-terminal domain |Mouse (Mus musculus) [TaxId: 10090]
d2gk3a1 : (LEU8) (ALA39) [view usage] : c.23.16.9 |Flavodoxin-like |Class I glutamine amidotransferase-like |STM3548-like |Putative cytoplasmic protein STM3548 |Salmonella typhimurium [TaxId: 90371]
d1bfvl_ : (ASP1) (ARG24) [view usage] : b.1.1.1 |Immunoglobulin-like beta-sandwich |Immunoglobulin |V set domains (antibody variable domain-like) |Immunoglobulin light chain kappa variable domain, VL-kappa |Mouse (Mus musculus), cluster 1.1 [TaxId: 10090]
d1t0ba_ : (GLY176) (ARG196) [view usage] : c.23.16.6 |Flavodoxin-like |Class I glutamine amidotransferase-like |ThuA-like |GK2113 homologue |Bacillus stearothermophilus [TaxId: 1422]
d1ehxa_ : (ASP3) (THR26) [view usage] : b.1.18.13 |Immunoglobulin-like beta-sandwich |E set domains |Cellulosomal scaffoldin protein CipC, module x2.1 |Cellulosomal scaffoldin protein CipC, module x2.1 |Clostridium cellulolyticum [TaxId: 1521]
d2jh2c_ : (GLU107) (THR134) [view usage] : b.2.2.2 |Common fold of diphtheria toxin/transcription factors/cytochrome f |Carbohydrate-binding domain |Cellulose-binding domain family III |automated matches |Clostridium perfringens [TaxId: 1502]
d2zc3b_ : (VAL473) (GLY500) [view usage] : e.3.1.1 |beta-lactamase/transpeptidase-like |beta-lactamase/transpeptidase-like |beta-Lactamase/D-ala carboxypeptidase |Penicillin-binding protein 2x (pbp-2x), transpeptidase domain |Pneumococcus (Streptococcus pneumoniae) [TaxId: 1313]
d3n7ta_ : (ARG6) (LEU28) [view usage] : c.23.16.0 |Flavodoxin-like |Class I glutamine amidotransferase-like |automated matches |automated matches |Fungus (Coccidioides immitis) [TaxId: 5501]
d4qkub2 : (HIS308) (ARG335) [view usage] : d.177.1.0 |FAH |FAH |automated matches |automated matches |Burkholderia cenocepacia [TaxId: 216591]
d1kkha1 : (MET6) (ALA32) [view usage] : d.14.1.5 |Ribosomal protein S5 domain 2-like |Ribosomal protein S5 domain 2-like |GHMP Kinase, N-terminal domain |Mevalonate kinase |Methanococcus jannaschii [TaxId: 2190]
d1dktb_ : (GLN5) (LEU24) [view usage] : d.97.1.1 |Cell cycle regulatory proteins |Cell cycle regulatory proteins |Cell cycle regulatory proteins |CksHs1 |Human (Homo sapiens) [TaxId: 9606]
List of distinct SCOP folds where this concept is used (in one or more of its domains):
e.3, b.19, d.159, c.66, c.80, c.23, b.18, d.14, b.2, b.1, d.177, b.77, d.111, b.7, d.218, b.71, d.73, g.7, d.97, g.69,
e.29