Tableau information
Concept source: d1pov1_ amino acid (a.a.) range (ILE239)(CYS270)
nSSEs in this Concept: 3
String of secondary struct.elems. (SSEs) defining this concept: EEE
Each SSE's a.a.range: (start resi) (end resi) SSEtype (H=Helix; E=Strand) followed by a numeric SSE ID:
(ILE239) (VAL244) E1
(THR251) (HIS265) E2
(HIS265) (CYS270) E3
Orientation angles° of SSE-pairs; those in contact shown in bold font
E1
E2 143.3° E2
E3 -138.6° -70.0°
Footnote: Inferred from this concept's usages (listed below) was the angular variance of 1σ = ±6.8° about each orientation angle shown above.
Loci of concept usages (shown as a range of a.a. residue ids) in SCOP(v2.05) domains, along with their brief legend taken from SCOP
d1gmma_ : (GLY82) (GLY107) [view usage] : b.18.1.10 |Galactose-binding domain-like |Galactose-binding domain-like |Family 6 carbohydrate binding module, CBM6 |Carbohydrate binding module from xylanase U |Clostridium thermocellum [TaxId: 1515]
d1bev3_ : (ASN201) (ILE228) [view usage] : b.121.4.1 |Nucleoplasmin-like/VP (viral coat and capsid proteins) |Positive stranded ssRNA viruses |Picornaviridae-like VP (VP1, VP2, VP3 and VP4) |Bovine enterovirus coat proteins |Bovine enterovirus, VG-5-27 [TaxId: 12064]
d1tme1_ : (GLY222) (CYS245) [view usage] : b.121.4.1 |Nucleoplasmin-like/VP (viral coat and capsid proteins) |Positive stranded ssRNA viruses |Picornaviridae-like VP (VP1, VP2, VP3 and VP4) |Theilovirus capsid proteins |Theiler's murine encephalomyelitis virus, strain da [TaxId: 12124]
d3dema3 : (SER190) (GLU216) [view usage] : b.23.1.0 |CUB-like |Spermadhesin, CUB domain |automated matches |automated matches |Human (Homo sapiens) [TaxId: 9606]
d1fpn1_ : (SER215) (CYS246) [view usage] : b.121.4.1 |Nucleoplasmin-like/VP (viral coat and capsid proteins) |Positive stranded ssRNA viruses |Picornaviridae-like VP (VP1, VP2, VP3 and VP4) |Rhinovirus coat proteins |Human rhinovirus A 2 (HRV-2) [TaxId: 12130]
d1mqta_ : (THR217) (VAL248) [view usage] : b.121.4.1 |Nucleoplasmin-like/VP (viral coat and capsid proteins) |Positive stranded ssRNA viruses |Picornaviridae-like VP (VP1, VP2, VP3 and VP4) |Swine vesicular disease virus coat proteins |Swine vesicular disease virus [TaxId: 12075]
d3cjia_ : (GLY215) (CYS248) [view usage] : b.121.4.0 |Nucleoplasmin-like/VP (viral coat and capsid proteins) |Positive stranded ssRNA viruses |automated matches |automated matches |Seneca valley virus [TaxId: 390157]
d1hqna2 : (GLY359) (THR384) [view usage] : b.121.2.1 |Nucleoplasmin-like/VP (viral coat and capsid proteins) |Group II dsDNA viruses VP |Coat protein p3 |Coat protein p3 |Bacteriophage PRD1 [TaxId: 10658]
d4cdqa_ : (PHE233) (ILE262) [view usage] : b.121.4.0 |Nucleoplasmin-like/VP (viral coat and capsid proteins) |Positive stranded ssRNA viruses |automated matches |automated matches |Human enterovirus 71 [TaxId: 39054]
d1rmu1_ : (GLY222) (ILE254) [view usage] : b.121.4.1 |Nucleoplasmin-like/VP (viral coat and capsid proteins) |Positive stranded ssRNA viruses |Picornaviridae-like VP (VP1, VP2, VP3 and VP4) |Rhinovirus coat proteins |Human rhinovirus B 14 (HRV-14) [TaxId: 12131]
d4rqpc_ : (PRO290) (GLY316) [view usage] : b.121.4.0 |Nucleoplasmin-like/VP (viral coat and capsid proteins) |Positive stranded ssRNA viruses |automated matches |automated matches |Enterovirus a71 [TaxId: 39054]
d1b35a_ : (PRO213) (LEU248) [view usage] : b.121.4.1 |Nucleoplasmin-like/VP (viral coat and capsid proteins) |Positive stranded ssRNA viruses |Picornaviridae-like VP (VP1, VP2, VP3 and VP4) |Insect picorna-like virus coat proteins |Cricket paralysis virus [TaxId: 12136]
d1psaa_ : (THR77) (VAL91) [view usage] : b.50.1.2 |Acid proteases |Acid proteases |Pepsin-like |Pepsin(ogen) |Pig (Sus scrofa) [TaxId: 9823]
d1uloa_ : (THR91) (ALA110) [view usage] : b.18.1.14 |Galactose-binding domain-like |Galactose-binding domain-like |CBM4/9 |Cellulose-binding domain of cellulase C |Cellulomonas fimi [TaxId: 1708]
d2rmu1_ : (GLY222) (ILE254) [view usage] : b.121.4.1 |Nucleoplasmin-like/VP (viral coat and capsid proteins) |Positive stranded ssRNA viruses |Picornaviridae-like VP (VP1, VP2, VP3 and VP4) |Rhinovirus coat proteins |Human rhinovirus B 14 (HRV-14) [TaxId: 12131]
d1rui1_ : (GLY223) (ILE254) [view usage] : b.121.4.1 |Nucleoplasmin-like/VP (viral coat and capsid proteins) |Positive stranded ssRNA viruses |Picornaviridae-like VP (VP1, VP2, VP3 and VP4) |Rhinovirus coat proteins |Human rhinovirus B 14 (HRV-14) [TaxId: 12131]
d2defa_ : (LEU78) (LEU91) [view usage] : d.167.1.1 |Peptide deformylase |Peptide deformylase |Peptide deformylase |Peptide deformylase |Escherichia coli [TaxId: 562]
d3vbfb_ : (PRO221) (GLY247) [view usage] : b.121.4.0 |Nucleoplasmin-like/VP (viral coat and capsid proteins) |Positive stranded ssRNA viruses |automated matches |automated matches |Human enterovirus 71 [TaxId: 39054]
d1uija1 : (TYR110) (ASN130) [view usage] : b.82.1.2 |Double-stranded beta-helix |RmlC-like cupins |Germin/Seed storage 7S protein |Seed storage 7S protein |Soybean (Glycine max), beta-conglycinin beta subunit [TaxId: 3847]
d1uxxx_ : (GLY82) (GLY107) [view usage] : b.18.1.10 |Galactose-binding domain-like |Galactose-binding domain-like |Family 6 carbohydrate binding module, CBM6 |Carbohydrate binding module from xylanase U |Clostridium thermocellum [TaxId: 1515]
d3vbob_ : (PRO290) (GLY316) [view usage] : b.121.4.0 |Nucleoplasmin-like/VP (viral coat and capsid proteins) |Positive stranded ssRNA viruses |automated matches |automated matches |Enterovirus a71 [TaxId: 39054]
d1smva_ : (PRO221) (GLU252) [view usage] : b.121.4.7 |Nucleoplasmin-like/VP (viral coat and capsid proteins) |Positive stranded ssRNA viruses |Tombusviridae-like VP |Sobemovirus coat protein |SMV (Sesbania mosaic virus) [TaxId: 12558]
d1w8xg_ : (GLY359) (THR384) [view usage] : i.6.1.1 |Viruses and virus-receptor complexes |Viruses and virus-receptor complexes |Viruses and virus-receptor complexes |PRD1 capsid assembly |Bacteriophage PRD1 [TaxId: 10658]
d3zfeb_ : (PRO221) (GLY247) [view usage] : b.121.4.0 |Nucleoplasmin-like/VP (viral coat and capsid proteins) |Positive stranded ssRNA viruses |automated matches |automated matches |Human enterovirus 71 [TaxId: 39054]
d1w8xa_ : (GLY359) (GLU385) [view usage] : i.6.1.1 |Viruses and virus-receptor complexes |Viruses and virus-receptor complexes |Viruses and virus-receptor complexes |PRD1 capsid assembly |Bacteriophage PRD1 [TaxId: 10658]
d1rug1_ : (SER223) (ILE254) [view usage] : b.121.4.1 |Nucleoplasmin-like/VP (viral coat and capsid proteins) |Positive stranded ssRNA viruses |Picornaviridae-like VP (VP1, VP2, VP3 and VP4) |Rhinovirus coat proteins |Human rhinovirus B 14 (HRV-14) [TaxId: 12131]
d1siqa2 : (SER202) (PRO228) [view usage] : e.6.1.1 |Acyl-CoA dehydrogenase NM domain-like |Acyl-CoA dehydrogenase NM domain-like |Medium chain acyl-CoA dehydrogenase, NM (N-terminal and middle) domains |Glutaryl-CoA dehydrogenase GCDH |Human (Homo sapiens) [TaxId: 9606]
d1r1a1_ : (THR219) (CYS250) [view usage] : b.121.4.1 |Nucleoplasmin-like/VP (viral coat and capsid proteins) |Positive stranded ssRNA viruses |Picornaviridae-like VP (VP1, VP2, VP3 and VP4) |Rhinovirus coat proteins |Human rhinovirus A 1A (HRV-1A) [TaxId: 12134]
d3zfec_ : (ASN201) (LEU228) [view usage] : b.121.4.1 |Nucleoplasmin-like/VP (viral coat and capsid proteins) |Positive stranded ssRNA viruses |Picornaviridae-like VP (VP1, VP2, VP3 and VP4) |automated matches |Human enterovirus 71 [TaxId: 39054]
d3gqtc1 : (SER206) (PRO232) [view usage] : e.6.1.0 |Acyl-CoA dehydrogenase NM domain-like |Acyl-CoA dehydrogenase NM domain-like |automated matches |automated matches |Burkholderia pseudomallei [TaxId: 320372]
d3sf6a1 : (THR210) (PRO236) [view usage] : e.6.1.0 |Acyl-CoA dehydrogenase NM domain-like |Acyl-CoA dehydrogenase NM domain-like |automated matches |automated matches |Mycobacterium smegmatis [TaxId: 246196]
d1ev11_ : (GLN218) (VAL249) [view usage] : b.121.4.1 |Nucleoplasmin-like/VP (viral coat and capsid proteins) |Positive stranded ssRNA viruses |Picornaviridae-like VP (VP1, VP2, VP3 and VP4) |Human enterovirus B coat proteins |Human echovirus 1 [TaxId: 46633]
d2x5ia_ : (LYS218) (VAL249) [view usage] : b.121.4.1 |Nucleoplasmin-like/VP (viral coat and capsid proteins) |Positive stranded ssRNA viruses |Picornaviridae-like VP (VP1, VP2, VP3 and VP4) |automated matches |Human echovirus 7 [TaxId: 46018]
d1rida4 : (SER226) (ARG244) [view usage] : g.18.1.1 |Complement control module/SCR domain |Complement control module/SCR domain |Complement control module/SCR domain |Complement control protein |Vaccinia virus [TaxId: 10245]
d1aym1_ : (THR216) (CYS247) [view usage] : b.121.4.1 |Nucleoplasmin-like/VP (viral coat and capsid proteins) |Positive stranded ssRNA viruses |Picornaviridae-like VP (VP1, VP2, VP3 and VP4) |Rhinovirus coat proteins |Human rhinovirus 16, (HRV-16) [TaxId: 31708]
d1bev1_ : (PHE219) (ILE247) [view usage] : b.121.4.1 |Nucleoplasmin-like/VP (viral coat and capsid proteins) |Positive stranded ssRNA viruses |Picornaviridae-like VP (VP1, VP2, VP3 and VP4) |Bovine enterovirus coat proteins |Bovine enterovirus, VG-5-27 [TaxId: 12064]
d1rhi1_ : (GLY222) (ILE254) [view usage] : b.121.4.1 |Nucleoplasmin-like/VP (viral coat and capsid proteins) |Positive stranded ssRNA viruses |Picornaviridae-like VP (VP1, VP2, VP3 and VP4) |Rhinovirus coat proteins |Human rhinovirus 3, (HRV-3) [TaxId: 44130]
d1fod1_ : (GLY166) (CYS187) [view usage] : b.121.4.1 |Nucleoplasmin-like/VP (viral coat and capsid proteins) |Positive stranded ssRNA viruses |Picornaviridae-like VP (VP1, VP2, VP3 and VP4) |Aphthovirus (Foot-and-mouth disease virus) coat proteins |FMDV (Foot-and-mouth disease virus), strain bfs, 1860 [TaxId: 12110]
d1rue1_ : (SER223) (ILE254) [view usage] : b.121.4.1 |Nucleoplasmin-like/VP (viral coat and capsid proteins) |Positive stranded ssRNA viruses |Picornaviridae-like VP (VP1, VP2, VP3 and VP4) |Rhinovirus coat proteins |Human rhinovirus B 14 (HRV-14) [TaxId: 12131]
d3vbfa_ : (PHE233) (ILE262) [view usage] : b.121.4.0 |Nucleoplasmin-like/VP (viral coat and capsid proteins) |Positive stranded ssRNA viruses |automated matches |automated matches |Human enterovirus 71 [TaxId: 39054]
d2b3ra_ : (LYS1387) (GLU1410) [view usage] : b.7.1.0 |C2 domain-like |C2 domain (Calcium/lipid-binding domain, CaLB) |automated matches |automated matches |Mouse (Mus musculus) [TaxId: 10090]
d2mev1_ : (GLY223) (CYS249) [view usage] : b.121.4.1 |Nucleoplasmin-like/VP (viral coat and capsid proteins) |Positive stranded ssRNA viruses |Picornaviridae-like VP (VP1, VP2, VP3 and VP4) |Mengo encephalomyocarditis virus coat proteins |Mengovirus [TaxId: 12107]
d1d4m1_ : (HIS218) (VAL249) [view usage] : b.121.4.1 |Nucleoplasmin-like/VP (viral coat and capsid proteins) |Positive stranded ssRNA viruses |Picornaviridae-like VP (VP1, VP2, VP3 and VP4) |Human enterovirus B coat proteins |Human coxsackievirus A9 [TaxId: 12067]
d3vbfc_ : (TYR202) (LEU228) [view usage] : b.121.4.1 |Nucleoplasmin-like/VP (viral coat and capsid proteins) |Positive stranded ssRNA viruses |Picornaviridae-like VP (VP1, VP2, VP3 and VP4) |automated matches |Human enterovirus 71 [TaxId: 39054]
d2pytb_ : (SER152) (TYR171) [view usage] : b.82.1.24 |Double-stranded beta-helix |RmlC-like cupins |EutQ-like |Ethanolamine utilization protein EutQ |Salmonella typhimurium [TaxId: 90371]
d1jpya_ : (VAL99) (THR126) [view usage] : g.17.1.6 |Cystine-knot cytokines |Cystine-knot cytokines |Interleukin 17F, IL-17F |Interleukin 17F, IL-17F |Human (Homo sapiens) [TaxId: 9606]
d4cewa_ : (PHE233) (ILE262) [view usage] : b.121.4.0 |Nucleoplasmin-like/VP (viral coat and capsid proteins) |Positive stranded ssRNA viruses |automated matches |automated matches |Human enterovirus 71 [TaxId: 39054]
d3r8ja_ : (GLY24) (VAL49) [view usage] : d.60.1.0 |Probable bacterial effector-binding domain |Probable bacterial effector-binding domain |automated matches |automated matches |Human (Homo sapiens) [TaxId: 9606]
d1ruc1_ : (SER223) (ILE254) [view usage] : b.121.4.1 |Nucleoplasmin-like/VP (viral coat and capsid proteins) |Positive stranded ssRNA viruses |Picornaviridae-like VP (VP1, VP2, VP3 and VP4) |Rhinovirus coat proteins |Human rhinovirus B 14 (HRV-14) [TaxId: 12131]
d1ywgo2 : (LYS230) (LYS254) [view usage] : d.81.1.1 |FwdE/GAPDH domain-like |Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain |GAPDH-like |Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) |Malaria parasite (Plasmodium falciparum) [TaxId: 5833]
d1k5ma_ : (SER1223) (ILE1254) [view usage] : b.121.4.1 |Nucleoplasmin-like/VP (viral coat and capsid proteins) |Positive stranded ssRNA viruses |Picornaviridae-like VP (VP1, VP2, VP3 and VP4) |Rhinovirus coat proteins |Human rhinovirus B 14 (HRV-14) [TaxId: 12131]
d3zfea_ : (THR232) (ILE262) [view usage] : b.121.4.0 |Nucleoplasmin-like/VP (viral coat and capsid proteins) |Positive stranded ssRNA viruses |automated matches |automated matches |Human enterovirus 71 [TaxId: 39054]
d2bw4a1 : (LEU12) (HIS60) [view usage] : b.6.1.3 |Cupredoxin-like |Cupredoxins |Multidomain cupredoxins |Nitrite reductase, NIR |Achromobacter cycloclastes [TaxId: 223]
d1x36a_ : (PRO229) (GLU260) [view usage] : b.121.4.7 |Nucleoplasmin-like/VP (viral coat and capsid proteins) |Positive stranded ssRNA viruses |Tombusviridae-like VP |automated matches |SMV (Sesbania mosaic virus) [TaxId: 12558]
List of distinct SCOP folds where this concept is used (in one or more of its domains):
b.82, b.50, i.6, e.6, b.18, b.121, d.81, b.6, d.167, b.7, g.17, g.18, b.23, d.60