Tableau information
Concept source: d1axra_ amino acid (a.a.) range (GLN219)(ALA246)
nSSEs in this Concept: 3
String of secondary struct.elems. (SSEs) defining this concept: EEE
Each SSE's a.a.range: (start resi) (end resi) SSEtype (H=Helix; E=Strand) followed by a numeric SSE ID:
(GLN219) (TYR233) E1
(ASN236) (THR240) E2
(MET241) (ALA246) E3
Orientation angles° of SSE-pairs; those in contact shown in bold font
E1
E2 163.0° E2
E3 160.6° -22.2°
Footnote: Inferred from this concept's usages (listed below) was the angular variance of 1σ = ±8.1° about each orientation angle shown above.
Loci of concept usages (shown as a range of a.a. residue ids) in SCOP(v2.05) domains, along with their brief legend taken from SCOP
d3vxia_ : (ARG400) (LYS423) [view usage] : d.58.4.14 |Ferredoxin-like |Dimeric alpha+beta barrel |Dyp-type peroxidase-like |Decolorizing peroxidase DyP |Bjerkandera adusta [TaxId: 5331]
d2ccxa_ : (CYS21) (ASN55) [view usage] : g.7.1.1 |Snake toxin-like |Snake toxin-like |Snake venom toxins |Cardiotoxin CTX IIB |Naja mossambica mossambica [TaxId: 196380]
d1wbba4 : (GLY87) (PRO116) [view usage] : d.75.2.0 |MutS N-terminal domain-like |DNA repair protein MutS, domain I |automated matches |automated matches |Escherichia coli [TaxId: 562]
d3tssa2 : (TYR153) (ASN194) [view usage] : d.15.6.1 |beta-Grasp (ubiquitin-like) |Superantigen toxins, C-terminal domain |Superantigen toxins, C-terminal domain |Toxic shock syndrome toxin-1 (TSST-1) |Staphylococcus aureus [TaxId: 1280]
d2nspa_ : (GLY302) (LYS329) [view usage] : b.80.1.5 |Single-stranded right-handed beta-helix |Pectin lyase-like |Pectin methylesterase |automated matches |Erwinia chrysanthemi [TaxId: 198628]
d1l5xa_ : (GLN194) (GLU218) [view usage] : c.106.1.1 |SurE-like |SurE-like |SurE-like |SurE homolog PAE2908 (SurE-alpha) |Pyrobaculum aerophilum [TaxId: 13773]
d3gpba_ : (GLN219) (ALA246) [view usage] : c.87.1.4 |UDP-Glycosyltransferase/glycogen phosphorylase |UDP-Glycosyltransferase/glycogen phosphorylase |Oligosaccharide phosphorylase |Glycogen phosphorylase |Rabbit (Oryctolagus cuniculus) [TaxId: 9986]
d2rdga2 : (LYS156) (LEU196) [view usage] : d.15.6.0 |beta-Grasp (ubiquitin-like) |Superantigen toxins, C-terminal domain |automated matches |automated matches |Staphylococcus aureus [TaxId: 1280]
d1kbsa_ : (LEU20) (ASN55) [view usage] : g.7.1.1 |Snake toxin-like |Snake toxin-like |Snake venom toxins |Cardiotoxin IV |Taiwan cobra (Naja naja atra) [TaxId: 8656]
d1xesd2 : (GLU369) (GLN393) [view usage] : c.95.1.0 |Thiolase-like |Thiolase-like |automated matches |automated matches |Scots pine (Pinus sylvestris) [TaxId: 3349]
d3b07b_ : (ARG257) (PRO279) [view usage] : f.6.1.1 |Leukocidin-like |Leukocidin-like |Leukocidin (pore-forming toxin) |automated matches |Staphylococcus aureus [TaxId: 158878]
d2y40b_ : (GLU142) (LYS159) [view usage] : c.77.1.1 |Isocitrate/Isopropylmalate dehydrogenase-like |Isocitrate/Isopropylmalate dehydrogenase-like |Dimeric isocitrate & isopropylmalate dehydrogenases |automated matches |Thermus thermophilus [TaxId: 274]
d3q2pb_ : (LYS69) (PRO92) [view usage] : d.17.1.1 |Cystatin-like |Cystatin/monellin |Monellin |automated matches |Serendipity berry (Dioscoreophyllum cumminsii) [TaxId: 3457]
d2ntba_ : (GLY302) (LYS329) [view usage] : b.80.1.5 |Single-stranded right-handed beta-helix |Pectin lyase-like |Pectin methylesterase |automated matches |Erwinia chrysanthemi [TaxId: 198628]
d1ts4a2 : (THR150) (ASN194) [view usage] : d.15.6.1 |beta-Grasp (ubiquitin-like) |Superantigen toxins, C-terminal domain |Superantigen toxins, C-terminal domain |Toxic shock syndrome toxin-1 (TSST-1) |Staphylococcus aureus [TaxId: 1280]
d3b07a_ : (PHE270) (LYS300) [view usage] : f.6.1.1 |Leukocidin-like |Leukocidin-like |Leukocidin (pore-forming toxin) |automated matches |Staphylococcus aureus [TaxId: 158878]
d1wgoa_ : (ARG97) (GLY119) [view usage] : b.1.3.1 |Immunoglobulin-like beta-sandwich |PKD domain |PKD domain |VPS10 domain-containing receptor SorCS2 |Human (Homo sapiens) [TaxId: 9606]
d3prod1 : (GLN47) (ARG85) [view usage] : d.52.1.1 |Alpha-lytic protease prodomain-like |Alpha-lytic protease prodomain |Alpha-lytic protease prodomain |Alpha-lytic protease prodomain |Lysobacter enzymogenes [TaxId: 69]
d4ohja2 : (TYR193) (ASN234) [view usage] : d.15.6.1 |beta-Grasp (ubiquitin-like) |Superantigen toxins, C-terminal domain |Superantigen toxins, C-terminal domain |automated matches |Staphylococcus aureus [TaxId: 1280]
d1gfqa_ : (GLY8) (ASN52) [view usage] : f.4.3.1 |Transmembrane beta-barrels |Porins |Porin |Porin |Escherichia coli, different sequences [TaxId: 562]
d1kv7a1 : (LYS84) (ASP132) [view usage] : b.6.1.3 |Cupredoxin-like |Cupredoxins |Multidomain cupredoxins |multi-copper oxidase CueO |Escherichia coli [TaxId: 562]
d2k3ga_ : (PHE60) (ARG103) [view usage] : g.7.1.3 |Snake toxin-like |Snake toxin-like |Extracellular domain of cell surface receptors |BMP receptor Ia ectodomain |Human (Homo sapiens) [TaxId: 9606]
d1irui_ : (ASP174) (ASN193) [view usage] : d.153.1.4 |Ntn hydrolase-like |N-terminal nucleophile aminohydrolases (Ntn hydrolases) |Proteasome subunits |Proteasome beta subunit (catalytic) |Cow (Bos taurus) [TaxId: 9913]
d3cpfb2 : (ILE133) (ALA151) [view usage] : b.40.4.0 |OB-fold |Nucleic acid-binding proteins |automated matches |automated matches |Human (Homo sapiens) [TaxId: 9606]
d4hwtb1 : (ILE577) (LEU596) [view usage] : d.104.1.0 |Class II aaRS and biotin synthetases |Class II aaRS and biotin synthetases |automated matches |automated matches |Human (Homo sapiens) [TaxId: 9606]
d2oz4a1 : (THR302) (LEU331) [view usage] : b.1.1.0 |Immunoglobulin-like beta-sandwich |Immunoglobulin |automated matches |automated matches |Human (Homo sapiens) [TaxId: 9606]
d1ffuc2 : (ALA134) (PRO173) [view usage] : d.145.1.3 |FAD-binding/transporter-associated domain-like |FAD-binding/transporter-associated domain-like |CO dehydrogenase flavoprotein N-terminal domain-like |Carbon monoxide (CO) dehydrogenase flavoprotein, N-terminal domain |Hydrogenophaga pseudoflava [TaxId: 47421]
d1ts2a2 : (TYR153) (ILE193) [view usage] : d.15.6.1 |beta-Grasp (ubiquitin-like) |Superantigen toxins, C-terminal domain |Superantigen toxins, C-terminal domain |Toxic shock syndrome toxin-1 (TSST-1) |Staphylococcus aureus [TaxId: 1280]
d2h9ua_ : (ASP66) (ALA98) [view usage] : d.68.6.0 |IF3-like |AlbA-like |automated matches |automated matches |Aeropyrum pernix [TaxId: 272557]
d1zsob_ : (GLN133) (ASN156) [view usage] : b.166.1.1 |MAL13P1.257-like |MAL13P1.257-like |MAL13P1.257-like |Hypothetical protein MAL13P1.257 |Malaria parasite (Plasmodium falciparum) [TaxId: 5833]
d4arxa2 : (ASN301) (ALA323) [view usage] : b.77.2.0 |beta-Prism I |delta-Endotoxin (insectocide), middle domain |automated matches |automated matches |Bacillus thuringiensis [TaxId: 29339]
d1zsoa1 : (GLN133) (ASN156) [view usage] : b.166.1.1 |MAL13P1.257-like |MAL13P1.257-like |MAL13P1.257-like |Hypothetical protein MAL13P1.257 |Malaria parasite (Plasmodium falciparum) [TaxId: 5833]
d2x1wb_ : (SER177) (CYS211) [view usage] : g.17.1.0 |Cystine-knot cytokines |Cystine-knot cytokines |automated matches |automated matches |Human (Homo sapiens) [TaxId: 9606]
d1ofda3 : (ARG350) (PRO386) [view usage] : d.153.1.1 |Ntn hydrolase-like |N-terminal nucleophile aminohydrolases (Ntn hydrolases) |Class II glutamine amidotransferases |Alpha subunit of glutamate synthase, N-terminal domain |Synechocystis sp. [TaxId: 1143]
d1ozna_ : (ALA30) (LEU64) [view usage] : c.10.2.7 |Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) |L domain-like |Ngr ectodomain-like |Reticulon 4 receptor (Nogo-66 receptor, Ngr) |Human (Homo sapiens) [TaxId: 9606]
d2ibsa1 : (GLY214) (HIS237) [view usage] : c.66.1.27 |S-adenosyl-L-methionine-dependent methyltransferases |S-adenosyl-L-methionine-dependent methyltransferases |DNA methylase TaqI, N-terminal domain |DNA methylase TaqI, N-terminal domain |Thermus aquaticus [TaxId: 271]
d3mm1a_ : (ARG400) (LYS423) [view usage] : d.58.4.14 |Ferredoxin-like |Dimeric alpha+beta barrel |Dyp-type peroxidase-like |Decolorizing peroxidase DyP |Bjerkandera adusta [TaxId: 5331]
d1e4oa_ : (GLU194) (ALA222) [view usage] : c.87.1.4 |UDP-Glycosyltransferase/glycogen phosphorylase |UDP-Glycosyltransferase/glycogen phosphorylase |Oligosaccharide phosphorylase |Maltodextrin phosphorylase (MALP) |Escherichia coli [TaxId: 562]
d1qila2 : (TYR153) (ASN194) [view usage] : d.15.6.1 |beta-Grasp (ubiquitin-like) |Superantigen toxins, C-terminal domain |Superantigen toxins, C-terminal domain |Toxic shock syndrome toxin-1 (TSST-1) |Staphylococcus aureus [TaxId: 1280]
d2p3ya1 : (THR380) (GLY436) [view usage] : e.65.1.1 |VPA0735-like |VPA0735-like |VPA0735-like |Hypothetical protein VPA0735 |Vibrio parahaemolyticus [TaxId: 670]
d1kh0a_ : (VAL4) (GLY24) [view usage] : d.15.7.1 |beta-Grasp (ubiquitin-like) |Immunoglobulin-binding domains |Immunoglobulin-binding domains |Immunoglobulin light chain-binding domain of protein L |Peptostreptococcus magnus [TaxId: 1260]
d4ohjb2 : (TYR193) (GLY235) [view usage] : d.15.6.1 |beta-Grasp (ubiquitin-like) |Superantigen toxins, C-terminal domain |Superantigen toxins, C-terminal domain |automated matches |Staphylococcus aureus [TaxId: 1280]
d1kf6a1 : (HIS550) (THR572) [view usage] : a.7.3.1 |Spectrin repeat-like |Succinate dehydrogenase/fumarate reductase flavoprotein C-terminal domain |Succinate dehydrogenase/fumarate reductase flavoprotein C-terminal domain |Fumarate reductase |Escherichia coli [TaxId: 562]
d1tp6a_ : (GLY99) (PHE126) [view usage] : d.17.4.12 |Cystatin-like |NTF2-like |PA1314-like |Hypothetical protein PA1314 |Pseudomonas aeruginosa [TaxId: 287]
d2guxa1 : (SER19) (SER54) [view usage] : b.77.3.1 |beta-Prism I |Mannose-binding lectins |Mannose-binding lectins |Griffithsin |Red alga (Griffithsia) [TaxId: 35158]
d1aw7a2 : (TYR153) (ILE193) [view usage] : d.15.6.1 |beta-Grasp (ubiquitin-like) |Superantigen toxins, C-terminal domain |Superantigen toxins, C-terminal domain |Toxic shock syndrome toxin-1 (TSST-1) |Staphylococcus aureus [TaxId: 1280]
d1yvbi_ : (THR93) (GLN116) [view usage] : d.17.1.2 |Cystatin-like |Cystatin/monellin |Cystatins |automated matches |Chicken (Gallus gallus) [TaxId: 9031]
d4bele_ : (VAL161) (GLY185) [view usage] : b.1.1.1 |Immunoglobulin-like beta-sandwich |Immunoglobulin |V set domains (antibody variable domain-like) |automated matches |Llama (Lama glama) [TaxId: 9844]
d1a90a_ : (LEU89) (GLN116) [view usage] : d.17.1.2 |Cystatin-like |Cystatin/monellin |Cystatins |Cystatin |Chicken (Gallus gallus) [TaxId: 9031]
d3l0ra_ : (GLN84) (HIS110) [view usage] : d.17.1.0 |Cystatin-like |Cystatin/monellin |automated matches |automated matches |Soft tick (Ornithodoros moubata) [TaxId: 6938]
d1f3la_ : (ALA447) (GLU485) [view usage] : c.66.1.6 |S-adenosyl-L-methionine-dependent methyltransferases |S-adenosyl-L-methionine-dependent methyltransferases |Arginine methyltransferase |Arginine methyltransferase, HMT1 |Norway rat (Rattus norvegicus) [TaxId: 10116]
d1wpwa_ : (GLY125) (ARG143) [view usage] : c.77.1.1 |Isocitrate/Isopropylmalate dehydrogenase-like |Isocitrate/Isopropylmalate dehydrogenase-like |Dimeric isocitrate & isopropylmalate dehydrogenases |3-isopropylmalate dehydrogenase, IPMDH |Sulfolobus tokodaii [TaxId: 111955]
d3unfh_ : (ASP174) (THR193) [view usage] : d.153.1.4 |Ntn hydrolase-like |N-terminal nucleophile aminohydrolases (Ntn hydrolases) |Proteasome subunits |automated matches |Mouse (Mus musculus) [TaxId: 10090]
d2ecpa_ : (TRP226) (ALA246) [view usage] : c.87.1.4 |UDP-Glycosyltransferase/glycogen phosphorylase |UDP-Glycosyltransferase/glycogen phosphorylase |Oligosaccharide phosphorylase |Maltodextrin phosphorylase (MALP) |Escherichia coli [TaxId: 562]
d1wbda4 : (GLY87) (PRO116) [view usage] : d.75.2.0 |MutS N-terminal domain-like |DNA repair protein MutS, domain I |automated matches |automated matches |Escherichia coli [TaxId: 562]
d2prob1 : (ALA49) (ASN83) [view usage] : d.52.1.1 |Alpha-lytic protease prodomain-like |Alpha-lytic protease prodomain |Alpha-lytic protease prodomain |Alpha-lytic protease prodomain |Lysobacter enzymogenes [TaxId: 69]
d1mpfa_ : (GLY8) (ASN52) [view usage] : f.4.3.1 |Transmembrane beta-barrels |Porins |Porin |Porin |Escherichia coli, different sequences [TaxId: 562]
d1g0uh_ : (ASP174) (ASN195) [view usage] : d.153.1.4 |Ntn hydrolase-like |N-terminal nucleophile aminohydrolases (Ntn hydrolases) |Proteasome subunits |Proteasome beta subunit (catalytic) |Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
d4g4si_ : (ASN172) (ASN194) [view usage] : d.153.1.4 |Ntn hydrolase-like |N-terminal nucleophile aminohydrolases (Ntn hydrolases) |Proteasome subunits |automated matches |Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
d1e3ma4 : (GLY87) (PRO116) [view usage] : d.75.2.1 |MutS N-terminal domain-like |DNA repair protein MutS, domain I |DNA repair protein MutS, domain I |DNA repair protein MutS, domain I |Escherichia coli [TaxId: 562]
d1uf4a_ : (ASN109) (GLY131) [view usage] : d.160.1.2 |Carbon-nitrogen hydrolase |Carbon-nitrogen hydrolase |Carbamilase |N-carbamoyl-D-aminoacid amidohydrolase |Agrobacterium sp. [TaxId: 361]
d4lsia_ : (GLY8) (ASN52) [view usage] : f.4.3.1 |Transmembrane beta-barrels |Porins |Porin |Porin |Escherichia coli, different sequences [TaxId: 562]
d1dtva_ : (PRO5) (PRO36) [view usage] : g.30.1.1 |Carboxypeptidase inhibitor |Carboxypeptidase inhibitor |Carboxypeptidase inhibitor |Carboxypeptidase inhibitor |Medicinal leech (Hirudo medicinalis) [TaxId: 6421]
d3kucb_ : (ASN56) (ASN74) [view usage] : d.15.1.5 |beta-Grasp (ubiquitin-like) |Ubiquitin-like |Ras-binding domain, RBD |c-Raf1 RBD |Human (Homo sapiens) [TaxId: 9606]
d3kj4a_ : (ALA30) (LEU64) [view usage] : c.10.2.7 |Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) |L domain-like |Ngr ectodomain-like |automated matches |Norway rat (Rattus norvegicus) [TaxId: 10116]
List of distinct SCOP folds where this concept is used (in one or more of its domains):
b.80, c.10, d.68, d.58, c.66, c.77, f.4, b.40, d.104, c.95, d.153, c.87, b.6, d.160, b.1, d.17, b.77, d.145, d.15, g.17,
d.52, c.106, g.7, f.6, a.7, e.65, b.166, d.75, g.30