Tableau information
Concept source: d3zeaa_ amino acid (a.a.) range (PHE72)(GLY92)
nSSEs in this Concept: 3
String of secondary struct.elems. (SSEs) defining this concept: EEE
Each SSE's a.a.range: (start resi) (end resi) SSEtype (H=Helix; E=Strand) followed by a numeric SSE ID:
(PHE72) (GLY78) E1
(GLY78) (GLU83) E2
(TYR88) (GLY92) E3
Orientation angles° of SSE-pairs; those in contact shown in bold font
E1
E2 70.5° E2
E3 143.6° -116.8°
Footnote: Inferred from this concept's usages (listed below) was the angular variance of 1σ = ±13.0° about each orientation angle shown above.
Loci of concept usages (shown as a range of a.a. residue ids) in SCOP(v2.05) domains, along with their brief legend taken from SCOP
d2cbja3 : (GLU51) (GLY70) [view usage] : d.92.2.3 |Zincin-like |beta-N-acetylhexosaminidase-like domain |Hyaluronidase N-terminal domain-like |Hyaluronidase N-terminal domain |Clostridium perfringens [TaxId: 1502]
d3agna_ : (PRO59) (SER80) [view usage] : d.1.1.4 |Microbial ribonucleases |Microbial ribonucleases |Fungal ribonucleases |RNase U2 |Ustilago sphaerogena [TaxId: 5271]
d2x89e_ : (PHE62) (GLN89) [view usage] : b.1.1.2 |Immunoglobulin-like beta-sandwich |Immunoglobulin |C1 set domains (antibody constant domain-like) |automated matches |Human (Homo sapiens) [TaxId: 9606]
d4unwa_ : (ASN250) (ARG269) [view usage] : b.19.1.2 |Viral protein domain |Viral protein domain |Influenza hemagglutinin headpiece |automated matches |Influenza a virus (a/eq/newmarket/93/(h3n8)) [TaxId: 159470]
d1e32a3 : (VAL166) (GLY186) [view usage] : d.31.1.1 |Cdc48 domain 2-like |Cdc48 domain 2-like |Cdc48 domain 2-like |Membrane fusion atpase p97 domain 2, P97-Nc |Mouse (Mus musculus) [TaxId: 10090]
d2kt1a_ : (GLY59) (GLY79) [view usage] : b.34.2.0 |SH3-like barrel |SH3-domain |automated matches |automated matches |Human (Homo sapiens) [TaxId: 9606]
d1bmv22 : (ASN2171) (GLY2188) [view usage] : b.121.4.2 |Nucleoplasmin-like/VP (viral coat and capsid proteins) |Positive stranded ssRNA viruses |Comoviridae-like VP |Comovirus coat proteins (VP37 and VP23) |BPMV (Bean pod mottle virus) [TaxId: 12260]
d2yrwa3 : (ALA325) (GLY348) [view usage] : b.84.2.0 |Barrel-sandwich hybrid |Rudiment single hybrid motif |automated matches |automated matches |Geobacillus kaustophilus [TaxId: 1462]
d4g63a_ : (LYS5) (ASP23) [view usage] : c.108.1.23 |HAD-like |HAD-like |5' nucleotidase-like |Cytosolic IMP-GMP specific 5'-nucleotidase |Legionella pneumophila [TaxId: 272624]
d2zcia1 : (ARG179) (ALA196) [view usage] : c.109.1.0 |PEP carboxykinase N-terminal domain |PEP carboxykinase N-terminal domain |automated matches |automated matches |Corynebacterium glutamicum [TaxId: 1718]
d1z93a_ : (PRO237) (PHE260) [view usage] : b.74.1.1 |Carbonic anhydrase |Carbonic anhydrase |Carbonic anhydrase |automated matches |Human (Homo sapiens) [TaxId: 9606]
d1lr5a_ : (GLY51) (VAL67) [view usage] : b.82.1.2 |Double-stranded beta-helix |RmlC-like cupins |Germin/Seed storage 7S protein |Auxin binding protein |Maize (Zea mays) [TaxId: 4577]
d2cnaa_ : (LYS35) (SER56) [view usage] : b.29.1.1 |Concanavalin A-like lectins/glucanases |Concanavalin A-like lectins/glucanases |Legume lectins |Concanavalin A |Jack bean (Canavalia ensiformis) [TaxId: 3823]
d2cnaa_ : (SER168) (PHE195) [view usage] : b.29.1.1 |Concanavalin A-like lectins/glucanases |Concanavalin A-like lectins/glucanases |Legume lectins |Concanavalin A |Jack bean (Canavalia ensiformis) [TaxId: 3823]
d4m4sa2 : (GLY240) (PRO257) [view usage] : b.43.3.1 |Reductase/isomerase/elongation factor common domain |Translation proteins |Elongation factors |Initiation factor eIF2 gamma subunit, domain II |Sulfolobus solfataricus [TaxId: 2287]
d2jfra_ : (PRO163) (SER183) [view usage] : d.219.1.0 |PP2C-like |PP2C-like |automated matches |automated matches |Mycobacterium smegmatis [TaxId: 246196]
d1bf5a2 : (LEU400) (GLY422) [view usage] : b.2.5.5 |Common fold of diphtheria toxin/transcription factors/cytochrome f |p53-like transcription factors |STAT DNA-binding domain |STAT-1, DNA-binding domain |Human (Homo sapiens) [TaxId: 9606]
d1fyaa_ : (GLY192) (GLU216) [view usage] : c.8.5.1 |The "swivelling" beta/beta/alpha domain |GroEL apical domain-like |GroEL-like chaperone, apical domain |GroEL, A domain |Escherichia coli [TaxId: 562]
d4d00c_ : (SER35) (ASN53) [view usage] : b.19.1.0 |Viral protein domain |Viral protein domain |automated matches |automated matches |Influenza virus a/jiangxi- donghu/346/2013 (h10n8) [TaxId: 11309]
d2xzme_ : (LEU77) (PHE99) [view usage] : i.1.1.3 |Ribosome and ribosomal fragments |Ribosome and ribosomal fragments |Small subunit |Eukaryotic, cytoplasmic (40S subunit) |Tetrahymena thermophila [TaxId: 5911]
d1y6ha_ : (GLY73) (PRO89) [view usage] : d.167.1.1 |Peptide deformylase |Peptide deformylase |Peptide deformylase |Peptide deformylase |Leptospira interrogans [TaxId: 173]
d1dzqb_ : (SER46) (PHE73) [view usage] : b.29.1.1 |Concanavalin A-like lectins/glucanases |Concanavalin A-like lectins/glucanases |Legume lectins |Legume lectin |Furze (Ulex europaeus), UEA-II [TaxId: 3902]
d3g5ka_ : (GLU88) (VAL102) [view usage] : d.167.1.0 |Peptide deformylase |Peptide deformylase |automated matches |automated matches |Human (Homo sapiens) [TaxId: 9606]
d1lr5b_ : (GLY51) (VAL67) [view usage] : b.82.1.2 |Double-stranded beta-helix |RmlC-like cupins |Germin/Seed storage 7S protein |Auxin binding protein |Maize (Zea mays) [TaxId: 4577]
d1aona2 : (GLY192) (GLU216) [view usage] : c.8.5.1 |The "swivelling" beta/beta/alpha domain |GroEL apical domain-like |GroEL-like chaperone, apical domain |GroEL, A domain |Escherichia coli [TaxId: 562]
d4kdla2 : (VAL166) (GLU185) [view usage] : d.31.1.1 |Cdc48 domain 2-like |Cdc48 domain 2-like |Cdc48 domain 2-like |Membrane fusion atpase p97 domain 2, P97-Nc |Human (Homo sapiens) [TaxId: 9606]
d4d00a_ : (SER35) (ASN53) [view usage] : b.19.1.0 |Viral protein domain |Viral protein domain |automated matches |automated matches |Influenza virus a/jiangxi- donghu/346/2013 (h10n8) [TaxId: 11309]
d1o78a_ : (GLU17) (VAL31) [view usage] : b.84.1.1 |Barrel-sandwich hybrid |Single hybrid motif |Biotinyl/lipoyl-carrier proteins and domains |Biotin carboxyl carrier domain of transcarboxylase (TC 1.3S) |Propionibacterium freudenreichii, subsp. shermanii [TaxId: 1744]
d1bhea_ : (SER50) (ASP68) [view usage] : b.80.1.3 |Single-stranded right-handed beta-helix |Pectin lyase-like |Galacturonase |Polygalacturonase |Erwinia carotovora, subsp. carotovora [TaxId: 554]
d1byha_ : (ALA170) (GLY188) [view usage] : b.29.1.2 |Concanavalin A-like lectins/glucanases |Concanavalin A-like lectins/glucanases |Glycosyl hydrolases family 16 |Bacillus 1-3,1-4-beta-glucanase |synthetic, hybrid between Bacillus amyloliquefaciens and Bacillus macerans proteins
d2hgje1 : (MET1) (ARG16) [view usage] : b.43.3.2 |Reductase/isomerase/elongation factor common domain |Translation proteins |Ribosomal protein L3 |Ribosomal protein L3 |Thermus thermophilus [TaxId: 274]
d4mo3m_ : (LEU2210) (GLN2235) [view usage] : b.18.1.2 |Galactose-binding domain-like |Galactose-binding domain-like |Discoidin domain (FA58C, coagulation factor 5/8 C-terminal domain) |automated matches |Pig (Sus scrofa) [TaxId: 9823]
d2q2ta1 : (ALA193) (PHE215) [view usage] : b.40.4.6 |OB-fold |Nucleic acid-binding proteins |DNA ligase/mRNA capping enzyme postcatalytic domain |ATP-dependent DNA ligase |Chlorella virus PBCV-1 [TaxId: 10506]
d3qc8a2 : (VAL166) (GLU185) [view usage] : d.31.1.1 |Cdc48 domain 2-like |Cdc48 domain 2-like |Cdc48 domain 2-like |Membrane fusion atpase p97 domain 2, P97-Nc |Human (Homo sapiens) [TaxId: 9606]
List of distinct SCOP folds where this concept is used (in one or more of its domains):
b.80, b.82, b.19, i.1, c.108, b.29, b.74, d.92, b.40, b.18, b.121, b.2, b.1, c.8, c.109, b.84, d.167, b.34, d.219, b.43,
d.1, e.19, d.31