Tableau information
Concept source: d2rgqa1 amino acid (a.a.) range (GLY67)(ASN94)
nSSEs in this Concept: 3
String of secondary struct.elems. (SSEs) defining this concept: EEE
Each SSE's a.a.range: (start resi) (end resi) SSEtype (H=Helix; E=Strand) followed by a numeric SSE ID:
(GLY67) (SER73) E1
(ASN74) (GLY79) E2
(ALA84) (ASN94) E3
Orientation angles° of SSE-pairs; those in contact shown in bold font
E1
E2 -59.6° E2
E3 143.5° -156.8°
Footnote: Inferred from this concept's usages (listed below) was the angular variance of 1σ = ±7.6° about each orientation angle shown above.
Loci of concept usages (shown as a range of a.a. residue ids) in SCOP(v2.05) domains, along with their brief legend taken from SCOP
d1s2ha_ : (ASN177) (LYS200) [view usage] : d.135.1.1 |The spindle assembly checkpoint protein mad2 |The spindle assembly checkpoint protein mad2 |The spindle assembly checkpoint protein mad2 |The spindle assembly checkpoint protein mad2 |Human (Homo sapiens) [TaxId: 9606]
d1ydua1 : (THR106) (GLY122) [view usage] : b.162.1.1 |At5g01610-like |At5g01610-like |At5g01610-like |Hypothetical protein At5g01610 |Thale cress (Arabidopsis thaliana) [TaxId: 3702]
d1j4tb_ : (ASN126) (LEU149) [view usage] : b.77.3.1 |beta-Prism I |Mannose-binding lectins |Mannose-binding lectins |Artocarpin |Jackfruit (Artocarpus heterophyllus) [TaxId: 3489]
d2x1wd_ : (PRO155) (SER182) [view usage] : g.17.1.0 |Cystine-knot cytokines |Cystine-knot cytokines |automated matches |automated matches |Human (Homo sapiens) [TaxId: 9606]
d1ouwc_ : (GLY129) (ARG151) [view usage] : b.77.3.1 |beta-Prism I |Mannose-binding lectins |Mannose-binding lectins |Calystegia sepium agglutinin |Hedge bindweed (Calystegia sepium) [TaxId: 47519]
d2mlma_ : (LYS119) (LYS148) [view usage] : b.100.1.1 |Sortase |Sortase |Sortase |Sortase A |Staphylococcus aureus [TaxId: 1280]
d1st0a2 : (GLU103) (PRO121) [view usage] : d.246.1.1 |mRNA decapping enzyme DcpS N-terminal domain |mRNA decapping enzyme DcpS N-terminal domain |mRNA decapping enzyme DcpS N-terminal domain |mRNA decapping enzyme DcpS N-terminal domain |Human (Homo sapiens) [TaxId: 9606]
d1beha_ : (ARG82) (PRO112) [view usage] : b.17.1.1 |PEBP-like |PEBP-like |Phosphatidylethanolamine binding protein |Phosphatidylethanolamine binding protein, PEBP |Human (Homo sapiens) [TaxId: 9606]
d2ex6a_ : (ASN227) (ASP250) [view usage] : e.3.1.3 |beta-lactamase/transpeptidase-like |beta-lactamase/transpeptidase-like |Dac-like |DD-carboxypeptidase DacB |Escherichia coli [TaxId: 562]
d3uyod_ : (THR9) (TRP25) [view usage] : b.1.2.0 |Immunoglobulin-like beta-sandwich |Fibronectin type III |automated matches |automated matches |Human (Homo sapiens) [TaxId: 9606]
d2gsye_ : (VAL276) (PRO297) [view usage] : b.121.4.9 |Nucleoplasmin-like/VP (viral coat and capsid proteins) |Positive stranded ssRNA viruses |Birnaviridae-like VP |automated matches |Infectious bursal disease virus [TaxId: 10995]
d2g1da1 : (MET1) (ASP26) [view usage] : d.12.1.3 |Ribosomal proteins S24e, L23 and L15e |Ribosomal proteins S24e, L23 and L15e |Ribosomal protein S24e |Ribosomal protein S24e |Thermoplasma acidophilum [TaxId: 2303]
d1vjha_ : (ASN35) (SER57) [view usage] : d.129.3.1 |TBP-like |Bet v1-like |Pathogenesis-related protein 10 (PR10)-like |Hypothetical protein At1G24000 |Thale cress (Arabidopsis thaliana) [TaxId: 3702]
d1ylib_ : (VAL79) (LYS103) [view usage] : d.38.1.1 |Thioesterase/thiol ester dehydrase-isomerase |Thioesterase/thiol ester dehydrase-isomerase |4HBT-like |Putative acyl-coa thioester hydrolase HI0827 |Haemophilus influenzae [TaxId: 727]
d1wfua_ : (LYS18) (ASP37) [view usage] : b.1.2.1 |Immunoglobulin-like beta-sandwich |Fibronectin type III |Fibronectin type III |Fibronectin type 3 and ankyrin repeat domains 1 protein, FANK1 |Mouse (Mus musculus) [TaxId: 10090]
d1ig3a1 : (GLN210) (ASN226) [view usage] : b.82.6.1 |Double-stranded beta-helix |Thiamin pyrophosphokinase, substrate-binding domain |Thiamin pyrophosphokinase, substrate-binding domain |Thiamin pyrophosphokinase, substrate-binding domain |Mouse (Mus musculus) [TaxId: 10090]
d1ylia_ : (VAL78) (LYS103) [view usage] : d.38.1.1 |Thioesterase/thiol ester dehydrase-isomerase |Thioesterase/thiol ester dehydrase-isomerase |4HBT-like |Putative acyl-coa thioester hydrolase HI0827 |Haemophilus influenzae [TaxId: 727]
d2bh1a2 : (HIS97) (ASP114) [view usage] : c.55.1.11 |Ribonuclease H-like motif |Actin-like ATPase domain |Cyto-EpsL domain |automated matches |Vibrio cholerae [TaxId: 666]
d2xfha_ : (GLY375) (SER405) [view usage] : a.104.1.0 |Cytochrome P450 |Cytochrome P450 |automated matches |automated matches |Saccharopolyspora erythraea [TaxId: 1836]
d1ie5a_ : (ILE7) (PRO41) [view usage] : b.1.1.4 |Immunoglobulin-like beta-sandwich |Immunoglobulin |I set domains |Neural cell adhesion molecule (NCAM) |Chicken (Gallus gallus) [TaxId: 9031]
d2imjd_ : (ASN103) (PRO132) [view usage] : d.17.4.23 |Cystatin-like |NTF2-like |PFL3262-like |Hypothetical protein PFL3262 |Pseudomonas fluorescens [TaxId: 294]
d1fnaa_ : (ARG6) (ASP23) [view usage] : b.1.2.1 |Immunoglobulin-like beta-sandwich |Fibronectin type III |Fibronectin type III |Fibronectin, different Fn3 modules |Human (Homo sapiens) [TaxId: 9606]
d2yhka_ : (ASP433) (TYR455) [view usage] : c.67.1.2 |PLP-dependent transferase-like |PLP-dependent transferases |Beta-eliminating lyases |automated matches |Citrobacter freundii [TaxId: 546]
d1vsah1 : (GLN92) (LEU110) [view usage] : c.21.1.1 |Ribosomal protein L13 |Ribosomal protein L13 |Ribosomal protein L13 |Ribosomal protein L13 |Thermus thermophilus [TaxId: 274]
d4egmb_ : (ALA380) (PRO408) [view usage] : a.104.1.0 |Cytochrome P450 |Cytochrome P450 |automated matches |automated matches |Rhodopseudomonas palustris [TaxId: 316058]
d2z77b_ : (ARG72) (GLU98) [view usage] : d.17.4.3 |Cystatin-like |NTF2-like |Ketosteroid isomerase-like |Hypothetical protein Rv0760c |Mycobacterium tuberculosis H37Rv [TaxId: 83332]
d3cw2c1 : (VAL64) (LYS83) [view usage] : b.40.4.5 |OB-fold |Nucleic acid-binding proteins |Cold shock DNA-binding domain-like |Eukaryotic initiation factor 2alpha, eIF2alpha, N-terminal domain |Sulfolobus solfataricus [TaxId: 2287]
d1f4ta_ : (ARG339) (ARG363) [view usage] : a.104.1.1 |Cytochrome P450 |Cytochrome P450 |Cytochrome P450 |Cyp119 |Sulfolobus solfataricus [TaxId: 2287]
d4ousa_ : (LEU1001) (HIS1028) [view usage] : b.22.1.0 |TNF-like |TNF-like |automated matches |automated matches |Zebrafish (Danio rerio) [TaxId: 7955]
d1pl3a_ : (THR99) (GLY123) [view usage] : b.1.9.1 |Immunoglobulin-like beta-sandwich |CBD9-like |Cytochrome domain of cellobiose dehydrogenase |Cytochrome domain of cellobiose dehydrogenase |Basidomycetes fungus (Phanerochaete chrysosporium) [TaxId: 5306]
d1ipkb1 : (SER18) (LEU33) [view usage] : b.82.1.2 |Double-stranded beta-helix |RmlC-like cupins |Germin/Seed storage 7S protein |Seed storage 7S protein |Soybean (Glycine max), beta-conglycinin beta subunit [TaxId: 3847]
d1fx0b2 : (ASN19) (PRO36) [view usage] : b.49.1.1 |Domain of alpha and beta subunits of F1 ATP synthase-like |N-terminal domain of alpha and beta subunits of F1 ATP synthase |N-terminal domain of alpha and beta subunits of F1 ATP synthase |F1 ATP synthase beta subunit, domain 1 |Spinach (Spinacia oleracea), chloroplast [TaxId: 3562]
d2imja1 : (GLY102) (PRO132) [view usage] : d.17.4.23 |Cystatin-like |NTF2-like |PFL3262-like |Hypothetical protein PFL3262 |Pseudomonas fluorescens [TaxId: 294]
d1f9oa_ : (SER461) (ASN490) [view usage] : a.102.1.2 |alpha/alpha toroid |Six-hairpin glycosidases |Cellulases catalytic domain |Processive endocellulase CelF (Cel48F) |Clostridium cellulolyticum [TaxId: 1521]
d2w9ta_ : (ASP130) (GLY159) [view usage] : c.71.1.0 |Dihydrofolate reductase-like |Dihydrofolate reductase-like |automated matches |automated matches |Staphylococcus aureus [TaxId: 1280]
d4pwza1 : (ARG35) (GLY55) [view usage] : c.51.2.0 |Anticodon-binding domain-like |TolB, N-terminal domain |automated matches |automated matches |Yersinia pestis [TaxId: 214092]
d2z02a_ : (GLY176) (ASP209) [view usage] : d.143.1.0 |SAICAR synthase-like |SAICAR synthase-like |automated matches |automated matches |Methanocaldococcus jannaschii [TaxId: 2190]
d1bp1a2 : (ARG432) (LYS456) [view usage] : d.83.1.1 |Aha1/BPI domain-like |Bactericidal permeability-increasing protein, BPI |Bactericidal permeability-increasing protein, BPI |Bactericidal permeability-increasing protein, BPI |Human (Homo sapiens) [TaxId: 9606]
d1opoc_ : (LYS81) (SER110) [view usage] : b.121.4.7 |Nucleoplasmin-like/VP (viral coat and capsid proteins) |Positive stranded ssRNA viruses |Tombusviridae-like VP |Carmovirus coat protein |CarMV (Carnation mottle virus) [TaxId: 11986]
d3az9g_ : (GLY186) (VAL213) [view usage] : d.38.1.6 |Thioesterase/thiol ester dehydrase-isomerase |Thioesterase/thiol ester dehydrase-isomerase |FabZ-like |(3R)-hydroxymyristoyl ACP dehydrase FabZ |Malaria parasite (Plasmodium falciparum) [TaxId: 5833]
d1vlra2 : (GLU102) (ARG121) [view usage] : d.246.1.1 |mRNA decapping enzyme DcpS N-terminal domain |mRNA decapping enzyme DcpS N-terminal domain |mRNA decapping enzyme DcpS N-terminal domain |mRNA decapping enzyme DcpS N-terminal domain |Mouse (Mus musculus) [TaxId: 10090]
d1eusa_ : (ARG109) (SER130) [view usage] : b.68.1.1 |6-bladed beta-propeller |Sialidases |Sialidases (neuraminidases) |Micromonospora sialidase, N-terminal domain |Micromonospora viridifaciens [TaxId: 1881]
d2moua_ : (GLN79) (ILE97) [view usage] : d.129.3.0 |TBP-like |Bet v1-like |automated matches |automated matches |Human (Homo sapiens) [TaxId: 9606]
d1wcqa3 : (ARG109) (PHE129) [view usage] : b.68.1.1 |6-bladed beta-propeller |Sialidases |Sialidases (neuraminidases) |automated matches |Micromonospora viridifaciens [TaxId: 1881]
d1nikc_ : (GLY5) (ASN24) [view usage] : i.8.1.1 |RNA polymerase |RNA polymerase |RNA polymerase |Complete 12-subunit RNA polymerase II complex |Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
d1usvh_ : (LYS40) (ASP80) [view usage] : d.83.2.1 |Aha1/BPI domain-like |Activator of Hsp90 ATPase, Aha1 |Activator of Hsp90 ATPase, Aha1 |Activator of Hsp90 ATPase, Aha1 |Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
d1dpea_ : (PRO184) (LYS199) [view usage] : c.94.1.1 |Periplasmic binding protein-like II |Periplasmic binding protein-like II |Phosphate binding protein-like |Dipeptide-binding protein |Escherichia coli [TaxId: 562]
d1hwgb2 : (ILE135) (GLU158) [view usage] : b.1.2.1 |Immunoglobulin-like beta-sandwich |Fibronectin type III |Fibronectin type III |Growth hormone receptor |Human (Homo sapiens) [TaxId: 9606]
d4jf8a_ : (LYS153) (GLN179) [view usage] : d.17.4.0 |Cystatin-like |NTF2-like |automated matches |automated matches |Bartonella birtlesii [TaxId: 111504]
d4ahia_ : (ARG101) (GLN117) [view usage] : d.5.1.1 |RNase A-like |RNase A-like |Ribonuclease A-like |Angiogenin |Human (Homo sapiens) [TaxId: 9606]
d2imjb_ : (ASN103) (PRO132) [view usage] : d.17.4.23 |Cystatin-like |NTF2-like |PFL3262-like |Hypothetical protein PFL3262 |Pseudomonas fluorescens [TaxId: 294]
d3qn3a2 : (PRO142) (GLY170) [view usage] : c.1.11.0 |TIM beta/alpha-barrel |Enolase C-terminal domain-like |automated matches |automated matches |Campylobacter jejuni [TaxId: 197]
d1xppa_ : (SER9) (GLU24) [view usage] : d.74.3.2 |DCoH-like |RBP11-like subunits of RNA polymerase |RBP11/RpoL |DNA-directed RNA polymerase subunit L, RpoL |Thermoplasma acidophilum [TaxId: 2303]
d2r49a_ : (GLY21) (MET39) [view usage] : b.29.1.2 |Concanavalin A-like lectins/glucanases |Concanavalin A-like lectins/glucanases |Glycosyl hydrolases family 16 |Bacillus 1-3,1-4-beta-glucanase |Fibrobacter succinogenes [TaxId: 833]
d4dnza_ : (ALA380) (PRO408) [view usage] : a.104.1.0 |Cytochrome P450 |Cytochrome P450 |automated matches |automated matches |Rhodopseudomonas palustris [TaxId: 316058]
d4lpyb_ : (PRO3) (TRP22) [view usage] : b.1.2.0 |Immunoglobulin-like beta-sandwich |Fibronectin type III |automated matches |automated matches |Artificial gene [TaxId: 32630]
d2d09a_ : (PRO375) (TRP404) [view usage] : a.104.1.1 |Cytochrome P450 |Cytochrome P450 |Cytochrome P450 |automated matches |Streptomyces coelicolor [TaxId: 100226]
d1opoa_ : (MET83) (SER110) [view usage] : b.121.4.7 |Nucleoplasmin-like/VP (viral coat and capsid proteins) |Positive stranded ssRNA viruses |Tombusviridae-like VP |Carmovirus coat protein |CarMV (Carnation mottle virus) [TaxId: 11986]
d1j4sa_ : (ASN126) (LEU149) [view usage] : b.77.3.1 |beta-Prism I |Mannose-binding lectins |Mannose-binding lectins |Artocarpin |Jackfruit (Artocarpus heterophyllus) [TaxId: 3489]
d2ycpa_ : (ASP433) (TYR455) [view usage] : c.67.1.2 |PLP-dependent transferase-like |PLP-dependent transferases |Beta-eliminating lyases |automated matches |Citrobacter freundii [TaxId: 546]
d1m06g_ : (SER16) (ASN37) [view usage] : b.121.5.1 |Nucleoplasmin-like/VP (viral coat and capsid proteins) |ssDNA viruses |Microviridae-like VP |Microvirus capsid proteins |Bacteriophage alpha3 [TaxId: 10849]
d2qe7d1 : (ASN2) (GLU19) [view usage] : b.49.1.0 |Domain of alpha and beta subunits of F1 ATP synthase-like |N-terminal domain of alpha and beta subunits of F1 ATP synthase |automated matches |automated matches |Bacillus sp. [TaxId: 90973]
d4kiha_ : (ALA454) (ALA481) [view usage] : a.102.1.0 |alpha/alpha toroid |Six-hairpin glycosidases |automated matches |automated matches |Clostridium cellulovorans [TaxId: 1493]
d2ogva_ : (ASN581) (GLY603) [view usage] : d.144.1.7 |Protein kinase-like (PK-like) |Protein kinase-like (PK-like) |Protein kinases, catalytic subunit |automated matches |Human (Homo sapiens) [TaxId: 9606]
d1behb_ : (ARG82) (PRO112) [view usage] : b.17.1.1 |PEBP-like |PEBP-like |Phosphatidylethanolamine binding protein |Phosphatidylethanolamine binding protein, PEBP |Human (Homo sapiens) [TaxId: 9606]
d1nkga1 : (VAL315) (GLY334) [view usage] : b.3.1.2 |Prealbumin-like |Starch-binding domain-like |Rhamnogalacturonase B, RhgB, middle domain |Rhamnogalacturonase B, RhgB, middle domain |Fungus (Aspergillus aculeatus) [TaxId: 5053]
d1xn9a_ : (MET1) (GLU26) [view usage] : d.12.1.3 |Ribosomal proteins S24e, L23 and L15e |Ribosomal proteins S24e, L23 and L15e |Ribosomal protein S24e |Ribosomal protein S24e |Methanosarcina mazei [TaxId: 2209]
d1zdxa1 : (GLY31) (THR53) [view usage] : b.167.1.1 |FimD N-terminal domain-like |FimD N-terminal domain-like |Usher N-domain |Outer membrane usher protein FimD |Escherichia coli [TaxId: 562]
d1m3ba_ : (GLY135) (ILE161) [view usage] : b.34.2.1 |SH3-like barrel |SH3-domain |SH3-domain |C-Crk, N-terminal SH3 domain |Mouse (Mus musculus) [TaxId: 10090]
d2irfg_ : (ASP90) (PRO113) [view usage] : a.4.5.23 |DNA/RNA-binding 3-helical bundle |"Winged helix" DNA-binding domain |Interferon regulatory factor |Interferon regulatory factor-2, IRF-2 |Mouse (Mus musculus) [TaxId: 10090]
d2xrxb_ : (ARG109) (LEU141) [view usage] : d.17.4.4 |Cystatin-like |NTF2-like |Ring hydroxylating beta subunit |automated matches |Burkholderia xenovorans [TaxId: 266265]
d3f1ex_ : (GLN163) (GLY186) [view usage] : e.38.1.0 |Release factor |Release factor |automated matches |automated matches |Thermus thermophilus [TaxId: 274]
d2bqpb_ : (ALA80) (THR122) [view usage] : b.29.1.1 |Concanavalin A-like lectins/glucanases |Concanavalin A-like lectins/glucanases |Legume lectins |Legume lectin |Pea (Pisum sativum) [TaxId: 3888]
d1l1ya_ : (SER489) (VAL514) [view usage] : a.102.1.2 |alpha/alpha toroid |Six-hairpin glycosidases |Cellulases catalytic domain |Processive endocellulase CelF (Cel48F) |Clostridium thermocellum [TaxId: 1515]
d1yeza1 : (ARG51) (VAL66) [view usage] : b.40.4.12 |OB-fold |Nucleic acid-binding proteins |TRAM domain |Hypothetical protein MM1357 |Methanosarcina mazei [TaxId: 2209]
List of distinct SCOP folds where this concept is used (in one or more of its domains):
b.68, e.3, c.1, b.82, c.67, c.94, a.104, b.29, a.102, d.129, d.144, b.40, c.55, b.121, c.71, b.1, d.143, d.17, d.38, c.51,
b.77, b.22, b.34, a.4, d.5, b.3, d.74, i.8, b.17, e.38, g.17, b.49, d.12, d.83, b.100, c.21, d.246, d.135, b.167, b.162