Tableau information
Concept source: d1yvbi_ amino acid (a.a.) range (SER41)(ILE61)
nSSEs in this Concept: 3
String of secondary struct.elems. (SSEs) defining this concept: EEE
Each SSE's a.a.range: (start resi) (end resi) SSEtype (H=Helix; E=Strand) followed by a numeric SSE ID:
(SER41) (ARG46) E1
(ILE48) (LEU54) E2
(GLY57) (ILE61) E3
Orientation angles° of SSE-pairs; those in contact shown in bold font
E1
E2 -89.0° E2
E3 81.3° 159.9°
Footnote: Inferred from this concept's usages (listed below) was the angular variance of 1σ = ±8.1° about each orientation angle shown above.
Loci of concept usages (shown as a range of a.a. residue ids) in SCOP(v2.05) domains, along with their brief legend taken from SCOP
d4hjja_ : (ASP126) (SER153) [view usage] : b.42.1.2 |beta-Trefoil |Cytokine |Interleukin-1 (IL-1) |automated matches |Human (Homo sapiens) [TaxId: 9606]
d1hkwa2 : (ASP157) (ALA177) [view usage] : c.1.6.1 |TIM beta/alpha-barrel |PLP-binding barrel |Alanine racemase-like, N-terminal domain |Diaminopimelate decarboxylase LysA |Mycobacterium tuberculosis [TaxId: 1773]
d3dvca_ : (PRO46) (ASP71) [view usage] : b.74.1.1 |Carbonic anhydrase |Carbonic anhydrase |Carbonic anhydrase |Carbonic anhydrase |Human (Homo sapiens), erythrocytes, isozyme II [TaxId: 9606]
d3pb1i_ : (GLU350) (MET377) [view usage] : e.1.1.1 |Serpins |Serpins |Serpins |Plasminogen activator inhibitor-1 |Human (Homo sapiens) [TaxId: 9606]
d4dtea_ : (GLU342) (GLN370) [view usage] : e.1.1.1 |Serpins |Serpins |Serpins |Plasminogen activator inhibitor-1 |Zebrafish (Danio rerio) [TaxId: 7955]
d1hkva2 : (ASP157) (ALA177) [view usage] : c.1.6.1 |TIM beta/alpha-barrel |PLP-binding barrel |Alanine racemase-like, N-terminal domain |Diaminopimelate decarboxylase LysA |Mycobacterium tuberculosis [TaxId: 1773]
d1k9oi_ : (PRO359) (ILE384) [view usage] : e.1.1.1 |Serpins |Serpins |Serpins |Alaserpin (serpin 1) |Tobacco hornworm (Manduca sexta) [TaxId: 7130]
d1d4vb_ : (ASP218) (ILE247) [view usage] : b.22.1.1 |TNF-like |TNF-like |TNF-like |Apoptosis-2 ligand, apo2l/TRAIL |Human (Homo sapiens) [TaxId: 9606]
d1xx3a_ : (GLY218) (GLN239) [view usage] : d.212.1.2 |TolA/TonB C-terminal domain |TolA/TonB C-terminal domain |TonB |TonB |Escherichia coli [TaxId: 562]
d3le2a_ : (ASP358) (VAL387) [view usage] : e.1.1.0 |Serpins |Serpins |automated matches |automated matches |Thale cress (Arabidopsis thaliana) [TaxId: 3702]
d2peea_ : (LYS393) (LEU420) [view usage] : e.1.1.0 |Serpins |Serpins |automated matches |automated matches |Thermoanaerobacter tengcongensis [TaxId: 273068]
d4ntla_ : (ALA101) (PRO136) [view usage] : c.94.1.0 |Periplasmic binding protein-like II |Periplasmic binding protein-like II |automated matches |automated matches |Enterococcus faecalis [TaxId: 226185]
d2f1na1 : (VAL219) (ARG250) [view usage] : d.151.1.1 |DNase I-like |DNase I-like |DNase I-like |Cytolethal distending toxin subunit B |Escherichia coli [TaxId: 562]
d2gnnd_ : (SER44) (VAL69) [view usage] : g.17.1.0 |Cystine-knot cytokines |Cystine-knot cytokines |automated matches |automated matches |Orf virus [TaxId: 10259]
d1j0sa_ : (ASP90) (SER117) [view usage] : b.42.1.2 |beta-Trefoil |Cytokine |Interleukin-1 (IL-1) |Interleukin-18 |Human (Homo sapiens) [TaxId: 9606]
d2p23a_ : (LEU113) (SER136) [view usage] : b.42.1.0 |beta-Trefoil |Cytokine |automated matches |automated matches |Human (Homo sapiens) [TaxId: 9606]
d4dy7f_ : (PRO349) (ASN377) [view usage] : e.1.1.0 |Serpins |Serpins |automated matches |automated matches |Human (Homo sapiens) [TaxId: 9606]
d1s7ia_ : (ALA50) (ASP74) [view usage] : d.58.4.9 |Ferredoxin-like |Dimeric alpha+beta barrel |DGPF domain (Pfam 04946) |Hypothetical protein PA1349 |Pseudomonas aeruginosa [TaxId: 287]
d2fh7a2 : (THR1774) (GLN1803) [view usage] : c.45.1.2 |(Phosphotyrosine protein) phosphatases II |(Phosphotyrosine protein) phosphatases II |Higher-molecular-weight phosphotyrosine protein phosphatases |automated matches |Human (Homo sapiens) [TaxId: 9606]
d1dyoa_ : (TYR10) (LEU32) [view usage] : b.18.1.7 |Galactose-binding domain-like |Galactose-binding domain-like |CBM22 |Xylan-binding domain |Clostridium thermocellum [TaxId: 1515]
d1v6aa2 : (GLU286) (THR307) [view usage] : d.162.1.0 |LDH C-terminal domain-like |LDH C-terminal domain-like |automated matches |automated matches |Carp (Cyprinus carpio) [TaxId: 7962]
d2gnnb_ : (SER44) (GLU79) [view usage] : g.17.1.0 |Cystine-knot cytokines |Cystine-knot cytokines |automated matches |automated matches |Orf virus [TaxId: 10259]
d1h6xa_ : (TYR10) (LEU32) [view usage] : b.18.1.7 |Galactose-binding domain-like |Galactose-binding domain-like |CBM22 |Xylan-binding domain |Clostridium thermocellum [TaxId: 1515]
d1t8ea2 : (GLY637) (GLY659) [view usage] : e.8.1.1 |DNA/RNA polymerases |DNA/RNA polymerases |DNA polymerase I |T7 phage DNA polymerase |Bacteriophage T7 [TaxId: 10760]
d1sddb4 : (LEU2062) (LEU2087) [view usage] : b.18.1.2 |Galactose-binding domain-like |Galactose-binding domain-like |Discoidin domain (FA58C, coagulation factor 5/8 C-terminal domain) |C2 domain of factor V |Cow (Bos taurus) [TaxId: 9913]
d1nyec_ : (GLY492) (ILE515) [view usage] : d.227.1.1 |OsmC-like |OsmC-like |Ohr/OsmC resistance proteins |Osmotically inducible protein OsmC |Escherichia coli [TaxId: 562]
d2z02a_ : (ASP28) (GLN50) [view usage] : d.143.1.0 |SAICAR synthase-like |SAICAR synthase-like |automated matches |automated matches |Methanocaldococcus jannaschii [TaxId: 2190]
d4dy7c_ : (PRO349) (ASN377) [view usage] : e.1.1.0 |Serpins |Serpins |automated matches |automated matches |Human (Homo sapiens) [TaxId: 9606]
d1opha_ : (PRO361) (VAL389) [view usage] : e.1.1.1 |Serpins |Serpins |Serpins |Antitrypsin, alpha-1 |Human (Homo sapiens) [TaxId: 9606]
d1b3ka_ : (PRO349) (MET377) [view usage] : e.1.1.1 |Serpins |Serpins |Serpins |Plasminogen activator inhibitor-1 |Human (Homo sapiens) [TaxId: 9606]
d4coga_ : (THR3) (THR44) [view usage] : c.8.8.0 |The "swivelling" beta/beta/alpha domain |Putative cyclase |automated matches |automated matches |Burkholderia cenocepacia [TaxId: 216591]
d2q3nb2 : (LEU53) (ILE82) [view usage] : b.42.2.1 |beta-Trefoil |Ricin B-like lectins |Ricin B-like |Agglutinin-1 chain B |Abrus precatorius [TaxId: 3816]
d1dpea_ : (THR44) (LEU67) [view usage] : c.94.1.1 |Periplasmic binding protein-like II |Periplasmic binding protein-like II |Phosphate binding protein-like |Dipeptide-binding protein |Escherichia coli [TaxId: 562]
d1g2ba_ : (MET0) (TYR13) [view usage] : b.34.2.1 |SH3-like barrel |SH3-domain |SH3-domain |alpha-Spectrin, SH3 domain |Chicken (Gallus gallus) [TaxId: 9031]
d2hqxa1 : (SER30) (ARG50) [view usage] : b.34.9.1 |SH3-like barrel |Tudor/PWWP/MBT |Tudor domain |P100 co-activator, SND1 |Human (Homo sapiens) [TaxId: 9606]
d2wqae_ : (LEU97) (CYS120) [view usage] : b.60.1.1 |Lipocalins |Lipocalins |Retinol binding protein-like |Retinol binding protein |Human (Homo sapiens) [TaxId: 9606]
d2fhqa1 : (VAL115) (LYS135) [view usage] : b.45.1.1 |Split barrel-like |FMN-binding split barrel |PNP-oxidase like |Putative general stress protein BT1439 |Bacteroides thetaiotaomicron [TaxId: 818]
d1t5oa_ : (ILE259) (ARG284) [view usage] : c.124.1.5 |NagB/RpiA/CoA transferase-like |NagB/RpiA/CoA transferase-like |IF2B-like |Putative eIF-2B delta-subunit |Archaeoglobus fulgidus [TaxId: 2234]
d1e5ui1 : (THR1) (GLN26) [view usage] : b.1.14.1 |Immunoglobulin-like beta-sandwich |Invasin/intimin cell-adhesion fragments |Invasin/intimin cell-adhesion fragments |Intimin |Escherichia coli [TaxId: 562]
d2f20a1 : (TYR36) (ASN59) [view usage] : d.303.1.1 |BB1717-like |BB1717-like |BB1717-like |Hypothetical protein BT1218 |Bacteroides thetaiotaomicron [TaxId: 818]
d1qqha_ : (CYS109) (VAL132) [view usage] : b.91.1.1 |E2 regulatory, transactivation domain |E2 regulatory, transactivation domain |E2 regulatory, transactivation domain |E2 regulatory, transactivation domain |Human papillomavirus type 18 [TaxId: 333761]
d3in1a_ : (LEU87) (THR112) [view usage] : c.72.1.0 |Ribokinase-like |Ribokinase-like |automated matches |automated matches |Escherichia coli K-12 [TaxId: 83333]
d4ocnd_ : (SER44) (ASP69) [view usage] : c.97.3.0 |Cytidine deaminase-like |JAB1/MPN domain |automated matches |automated matches |Baker's yeast (Saccharomyces cerevisiae) [TaxId: 559292]
d3r4la_ : (GLU373) (MET400) [view usage] : e.1.1.1 |Serpins |Serpins |Serpins |automated matches |Human (Homo sapiens) [TaxId: 9606]
d1bola_ : (THR6) (LYS52) [view usage] : d.124.1.1 |Ribonuclease Rh-like |Ribonuclease Rh-like |Ribonuclease Rh-like |Ribonuclease Rh |Rhizopus niveus [TaxId: 4844]
d1atua_ : (ILE360) (VAL389) [view usage] : e.1.1.1 |Serpins |Serpins |Serpins |Antitrypsin, alpha-1 |Human (Homo sapiens) [TaxId: 9606]
d3f1sa_ : (PRO391) (VAL418) [view usage] : e.1.1.0 |Serpins |Serpins |automated matches |automated matches |Human (Homo sapiens) [TaxId: 9606]
d1ur6a_ : (PRO44) (THR71) [view usage] : d.20.1.1 |UBC-like |UBC-like |UBC-related |Ubiquitin conjugating enzyme, UBC |Human (Homo sapiens), ubch5b [TaxId: 9606]
d1nyea_ : (GLY92) (ILE115) [view usage] : d.227.1.1 |OsmC-like |OsmC-like |Ohr/OsmC resistance proteins |Osmotically inducible protein OsmC |Escherichia coli [TaxId: 562]
d1ejna_ : (GLY37) (SER54) [view usage] : b.47.1.2 |Trypsin-like serine proteases |Trypsin-like serine proteases |Eukaryotic proteases |Urokinase-type plasminogen activator (LMW U-PA), catalytic domain |Human (Homo sapiens) [TaxId: 9606]
d2gbsa1 : (LYS58) (ALA88) [view usage] : b.122.1.8 |PUA domain-like |PUA domain-like |Atu2648/PH1033-like |Hypothetical protein RPA0253 |Rhodopseudomonas palustris [TaxId: 1076]
d1kcaa_ : (GLU171) (PHE191) [view usage] : b.87.1.1 |LexA/Signal peptidase |LexA/Signal peptidase |LexA-related |lambda repressor C-terminal domain |Bacteriophage lambda [TaxId: 10710]
d1g0va_ : (GLU202) (PRO224) [view usage] : b.50.1.2 |Acid proteases |Acid proteases |Pepsin-like |Acid protease |Baker's yeast (Saccharomyces cerevisiae), proteinase A [TaxId: 4932]
d4kpta_ : (PHE105) (THR121) [view usage] : c.94.1.0 |Periplasmic binding protein-like II |Periplasmic binding protein-like II |automated matches |automated matches |Lactococcus lactis [TaxId: 272623]
d1hp7a_ : (PRO362) (VAL389) [view usage] : e.1.1.1 |Serpins |Serpins |Serpins |Antitrypsin, alpha-1 |Human (Homo sapiens) [TaxId: 9606]
d4prsb_ : (TYR92) (THR111) [view usage] : c.94.1.0 |Periplasmic binding protein-like II |Periplasmic binding protein-like II |automated matches |automated matches |Thermotoga maritima [TaxId: 243274]
d2r4ia1 : (GLU91) (ALA120) [view usage] : d.17.4.15 |Cystatin-like |NTF2-like |CHU142-like |Uncharacterized protein CHU142 |Cytophaga hutchinsonii [TaxId: 985]
d2keqa_ : (GLN46) (ALA68) [view usage] : b.86.1.0 |Hedgehog/intein (Hint) domain |Hedgehog/intein (Hint) domain |automated matches |automated matches |Nostoc punctiforme [TaxId: 63737]
d1seka_ : (PRO359) (VAL384) [view usage] : e.1.1.1 |Serpins |Serpins |Serpins |Serpin K |Tobacco hornworm (Manduca sexta) [TaxId: 7130]
d1jmjb_ : (VAL448) (ALA475) [view usage] : e.1.1.1 |Serpins |Serpins |Serpins |Heparin cofactor II (Hc-II, leuserpin 2) |Human (Homo sapiens) [TaxId: 9606]
d1ovad_ : (SER361) (VAL389) [view usage] : e.1.1.1 |Serpins |Serpins |Serpins |Ovalbumin |Chicken (Gallus gallus) [TaxId: 9031]
d3ne4a_ : (PRO362) (VAL389) [view usage] : e.1.1.1 |Serpins |Serpins |Serpins |automated matches |Human (Homo sapiens) [TaxId: 9606]
d2fhqb_ : (VAL115) (HIS134) [view usage] : b.45.1.1 |Split barrel-like |FMN-binding split barrel |PNP-oxidase like |automated matches |Bacteroides thetaiotaomicron [TaxId: 226186]
d1scza_ : (ASP259) (VAL282) [view usage] : c.43.1.1 |CoA-dependent acyltransferases |CoA-dependent acyltransferases |CAT-like |Dihydrolipoamide succinyltransferase |Escherichia coli [TaxId: 562]
d4ocna_ : (SER44) (ASP69) [view usage] : c.97.3.0 |Cytidine deaminase-like |JAB1/MPN domain |automated matches |automated matches |Baker's yeast (Saccharomyces cerevisiae) [TaxId: 559292]
List of distinct SCOP folds where this concept is used (in one or more of its domains):
e.8, c.1, c.94, d.58, b.74, b.47, c.124, c.45, b.50, c.72, d.151, b.60, b.18, b.122, b.1, b.45, c.97, d.20, c.43, d.143,
b.42, c.8, d.17, d.124, e.1, b.22, b.34, b.91, d.162, b.87, d.227, g.17, b.86, d.212, d.303