Tableau information
Concept source: d3u5em_ amino acid (a.a.) range (ARG19)(ASP40)
nSSEs in this Concept: 3
String of secondary struct.elems. (SSEs) defining this concept: EEE
Each SSE's a.a.range: (start resi) (end resi) SSEtype (H=Helix; E=Strand) followed by a numeric SSE ID:
(ARG19) (LYS25) E1
(GLY30) (ALA34) E2
(VAL36) (ASP40) E3
Orientation angles° of SSE-pairs; those in contact shown in bold font
E1
E2 145.6° E2
E3 73.1° -90.2°
Footnote: Inferred from this concept's usages (listed below) was the angular variance of 1σ = ±9.5° about each orientation angle shown above.
Loci of concept usages (shown as a range of a.a. residue ids) in SCOP(v2.05) domains, along with their brief legend taken from SCOP
d3bofa1 : (PHE301) (ARG321) [view usage] : c.1.21.2 |TIM beta/alpha-barrel |Dihydropteroate synthetase-like |Methyltetrahydrofolate-utiluzing methyltransferases |Cobalamin-dependent methionine synthase MetH, C-terminal domain |Thermotoga maritima [TaxId: 2336]
d1q7ra_ : (SER114) (GLU140) [view usage] : c.23.16.1 |Flavodoxin-like |Class I glutamine amidotransferase-like |Class I glutamine amidotransferases (GAT) |Hypothetical protein YaaE |Bacillus stearothermophilus [TaxId: 1422]
d2w7ub_ : (ASN136) (PRO151) [view usage] : b.47.1.0 |Trypsin-like serine proteases |Trypsin-like serine proteases |automated matches |automated matches |Staphylococcus aureus [TaxId: 93061]
d1h3ha_ : (ASP33) (ARG75) [view usage] : b.34.2.1 |SH3-like barrel |SH3-domain |SH3-domain |Grb2-related adaptor protein 2 (Mona/Gads) |Mouse (Mus musculus) [TaxId: 10090]
d3p8ba_ : (SER2) (ASP38) [view usage] : g.41.9.3 |Rubredoxin-like |RNA polymerase subunits |RpoE2-like |automated matches |Pyrococcus furiosus [TaxId: 2261]
d3r8xa2 : (SER237) (PRO255) [view usage] : b.46.1.0 |FMT C-terminal domain-like |FMT C-terminal domain-like |automated matches |automated matches |Yersinia pestis [TaxId: 632]
d2qq2b_ : (LEU299) (GLN336) [view usage] : d.38.1.0 |Thioesterase/thiol ester dehydrase-isomerase |Thioesterase/thiol ester dehydrase-isomerase |automated matches |automated matches |Human (Homo sapiens) [TaxId: 9606]
d3rgwl_ : (SER2) (PRO22) [view usage] : e.18.1.0 |HydB/Nqo4-like |HydB/Nqo4-like |automated matches |automated matches |Ralstonia eutropha [TaxId: 381666]
d3pfdc1 : (THR203) (PRO229) [view usage] : e.6.1.0 |Acyl-CoA dehydrogenase NM domain-like |Acyl-CoA dehydrogenase NM domain-like |automated matches |automated matches |Mycobacterium thermoresistibile [TaxId: 1797]
d1pxva_ : (SER374) (GLY392) [view usage] : d.3.1.1 |Cysteine proteinases |Cysteine proteinases |Papain-like |Staphopain SspB |Staphylococcus aureus [TaxId: 1280]
d3skje_ : (GLN1) (LEU20) [view usage] : b.18.1.0 |Galactose-binding domain-like |Galactose-binding domain-like |automated matches |automated matches |Human (Homo sapiens) [TaxId: 9606]
d2e41a2 : (THR43) (SER67) [view usage] : d.104.1.2 |Class II aaRS and biotin synthetases |Class II aaRS and biotin synthetases |Biotin holoenzyme synthetase |Biotin--[acetyl-CoA-carboxylase] ligase catalytic domain |Pyrococcus horikoshii [TaxId: 53953]
d1n73c1 : (GLN177) (HIS198) [view usage] : d.171.1.1 |Fibrinogen C-terminal domain-like |Fibrinogen C-terminal domain-like |Fibrinogen C-terminal domain-like |Fibrinogen C-terminal domains |Sea lamprey (Petromyzon marinus), gamma [TaxId: 7757]
d4o1ra_ : (GLU91) (GLY115) [view usage] : b.86.1.2 |Hedgehog/intein (Hint) domain |Hedgehog/intein (Hint) domain |Intein (protein splicing domain) |automated matches |Nostoc punctiforme [TaxId: 63737]
d1p5qa2 : (GLY214) (GLU257) [view usage] : d.26.1.1 |FKBP-like |FKBP-like |FKBP immunophilin/proline isomerase |FKBP52, N-terminal domains |Human (Homo sapiens) [TaxId: 9606]
d1ak4b_ : (GLY50) (ALA103) [view usage] : b.62.1.1 |Cyclophilin-like |Cyclophilin-like |Cyclophilin (peptidylprolyl isomerase) |Cyclophilin (eukaryotic) |Human (Homo sapiens), variant A [TaxId: 9606]
d1dg1g2 : (LEU372) (SER393) [view usage] : b.44.1.1 |Elongation factor/aminomethyltransferase common domain |EF-Tu/eEF-1alpha/eIF2-gamma C-terminal domain |EF-Tu/eEF-1alpha/eIF2-gamma C-terminal domain |Elongation factor Tu (EF-Tu) |Escherichia coli [TaxId: 562]
d1uuea_ : (LYS43) (ASP62) [view usage] : b.34.2.1 |SH3-like barrel |SH3-domain |SH3-domain |alpha-Spectrin, SH3 domain |Chicken (Gallus gallus) [TaxId: 9031]
d3huta_ : (ILE357) (ILE384) [view usage] : c.93.1.0 |Periplasmic binding protein-like I |Periplasmic binding protein-like I |automated matches |automated matches |Rhodospirillum rubrum [TaxId: 269796]
d4jhba_ : (LEU269) (ARG285) [view usage] : b.1.18.1 |Immunoglobulin-like beta-sandwich |E set domains |NF-kappa-B/REL/DORSAL transcription factors, C-terminal domain |automated matches |Mouse (Mus musculus) [TaxId: 10090]
d2bitx1 : (GLY50) (ALA103) [view usage] : b.62.1.1 |Cyclophilin-like |Cyclophilin-like |Cyclophilin (peptidylprolyl isomerase) |Mitochondrial peptidyl-prolyl cis-trans isomerase, cyclophilin F |Human (Homo sapiens) [TaxId: 9606]
d1fd9a_ : (GLY100) (ASN117) [view usage] : d.26.1.1 |FKBP-like |FKBP-like |FKBP immunophilin/proline isomerase |Macrophage infectivity potentiator protein (MIP) |Legionella pneumophila [TaxId: 446]
d3n3ka_ : (SER932) (LEU956) [view usage] : d.3.1.9 |Cysteine proteinases |Cysteine proteinases |Ubiquitin carboxyl-terminal hydrolase, UCH |Ubiquitin carboxyl-terminal hydrolase 8 |Human (Homo sapiens) [TaxId: 9606]
d1nppd2 : (GLN200) (PRO220) [view usage] : b.34.5.4 |SH3-like barrel |Translation proteins SH3-like domain |N-utilization substance G protein NusG, C-terminal domain |N-utilization substance G protein NusG, C-terminal domain |Aquifex aeolicus [TaxId: 63363]
d3u5ez_ : (GLY8) (GLU31) [view usage] : i.1.1.1 |Ribosome and ribosomal fragments |Ribosome and ribosomal fragments |Ribosome complexes |Eukaryotic, cytoplasmic (80S ribosome functional complex) |Saccharomyces cerevisiae [TaxId: 559292]
d1uwva1 : (THR55) (SER71) [view usage] : b.40.4.12 |OB-fold |Nucleic acid-binding proteins |TRAM domain |rRNA (Uracil-5-)-methyltransferase RumA, N-terminal domain |Escherichia coli [TaxId: 562]
d1whka_ : (ASP61) (SER86) [view usage] : b.34.10.1 |SH3-like barrel |Cap-Gly domain |Cap-Gly domain |Restin-like protein 2, Rsnl2 |Mouse (Mus musculus) [TaxId: 10090]
d1bvea_ : (ARG41) (CYS67) [view usage] : b.50.1.1 |Acid proteases |Acid proteases |Retroviral protease (retropepsin) |Human immunodeficiency virus type 1 protease |Human immunodeficiency virus type 1 [TaxId: 11676]
d4lypa_ : (GLY11) (GLN28) [view usage] : c.1.8.0 |TIM beta/alpha-barrel |(Trans)glycosidases |automated matches |automated matches |Rhizomucor miehei [TaxId: 4839]
d2fr0a2 : (GLN1637) (ALA1655) [view usage] : c.2.1.2 |NAD(P)-binding Rossmann-fold domains |NAD(P)-binding Rossmann-fold domains |Tyrosine-dependent oxidoreductases |Erythromycin synthase, eryAI, 1st ketoreductase module |Saccharopolyspora erythraea [TaxId: 1836]
d4ffva1 : (ALA211) (ASP241) [view usage] : b.70.3.1 |8-bladed beta-propeller |DPP6 N-terminal domain-like |DPP6 N-terminal domain-like |automated matches |Norway rat (Rattus norvegicus) [TaxId: 10116]
d1sxwa_ : (ASN85) (ASP114) [view usage] : b.60.1.1 |Lipocalins |Lipocalins |Retinol binding protein-like |Nitrophorin 4 |Rhodnius prolixus [TaxId: 13249]
d1slqb_ : (ASP384) (LEU411) [view usage] : f.47.1.1 |VP4 membrane interaction domain |VP4 membrane interaction domain |VP4 membrane interaction domain |VP4 membrane interaction domain |Rhesus rotavirus [TaxId: 10969]
d4mzya2 : (GLU392) (LEU417) [view usage] : c.1.17.1 |TIM beta/alpha-barrel |Nicotinate/Quinolinate PRTase C-terminal domain-like |NadC C-terminal domain-like |Putative nicotinate phosphoribosyltransferase EF2626 |Enterococcus faecalis [TaxId: 1351]
d1q1ca2 : (SER217) (GLU257) [view usage] : d.26.1.1 |FKBP-like |FKBP-like |FKBP immunophilin/proline isomerase |FKBP52, N-terminal domains |Human (Homo sapiens) [TaxId: 9606]
d1f39a_ : (PHE141) (PRO176) [view usage] : b.87.1.1 |LexA/Signal peptidase |LexA/Signal peptidase |LexA-related |lambda repressor C-terminal domain |Bacteriophage lambda [TaxId: 10710]
d2f8sa1 : (ILE183) (LYS201) [view usage] : b.34.14.1 |SH3-like barrel |PAZ domain |PAZ domain |automated matches |Aquifex aeolicus [TaxId: 63363]
d3uqyl_ : (SER2) (PRO23) [view usage] : e.18.1.0 |HydB/Nqo4-like |HydB/Nqo4-like |automated matches |automated matches |Escherichia coli [TaxId: 562]
d1ooca_ : (VAL129) (THR149) [view usage] : b.80.1.1 |Single-stranded right-handed beta-helix |Pectin lyase-like |Pectate lyase-like |Pectate lyase |Erwinia chrysanthemi, type A [TaxId: 556]
d1igub_ : (LYS306) (PRO327) [view usage] : b.34.1.3 |SH3-like barrel |C-terminal domain of transcriptional repressors |Transcriptional repressor protein KorB |Transcriptional repressor protein KorB |Escherichia coli [TaxId: 562]
d3n40f1 : (GLY258) (ILE280) [view usage] : f.10.1.1 |Viral glycoprotein, central and dimerisation domains |Viral glycoprotein, central and dimerisation domains |Viral glycoprotein, central and dimerisation domains |automated matches |Chikungunya virus [TaxId: 37124]
d2ahmf_ : (ASN150) (ALA167) [view usage] : d.302.1.1 |Coronavirus NSP8-like |Coronavirus NSP8-like |Coronavirus NSP8-like |Nonstructural protein 8, NSP8 |SARS coronavirus [TaxId: 227859]
d3zvjg_ : (PRO10) (PHE39) [view usage] : c.47.1.0 |Thioredoxin fold |Thioredoxin-like |automated matches |automated matches |Blood fluke (Schistosoma mansoni) [TaxId: 6183]
d4elzc_ : (PRO56) (PRO76) [view usage] : b.34.6.1 |SH3-like barrel |Cell growth inhibitor/plasmid maintenance toxic component |CcdB |CcdB |Vibrio fischeri [TaxId: 668]
d2quyf_ : (GLY56) (THR85) [view usage] : d.153.1.0 |Ntn hydrolase-like |N-terminal nucleophile aminohydrolases (Ntn hydrolases) |automated matches |automated matches |Bacillus sphaericus [TaxId: 1421]
d4iw3b3 : (LEU376) (GLU397) [view usage] : b.44.1.0 |Elongation factor/aminomethyltransferase common domain |EF-Tu/eEF-1alpha/eIF2-gamma C-terminal domain |automated matches |automated matches |Pseudomonas putida [TaxId: 160488]
d1z7ea1 : (ALA231) (PRO249) [view usage] : b.46.1.1 |FMT C-terminal domain-like |FMT C-terminal domain-like |Post formyltransferase domain |Polymyxin resistance protein ArnA, domain 2 |Escherichia coli [TaxId: 562]
d4h6aa_ : (ASN54) (ALA79) [view usage] : b.159.1.0 |AOC barrel-like |Allene oxide cyclase-like |automated matches |automated matches |Physcomitrella patens [TaxId: 145481]
d1i78a_ : (GLY146) (PRO179) [view usage] : f.4.4.1 |Transmembrane beta-barrels |OMPT-like |Outer membrane protease OMPT |Outer membrane protease OMPT |Escherichia coli [TaxId: 562]
d2ke0a_ : (THR6) (GLY24) [view usage] : d.26.1.0 |FKBP-like |FKBP-like |automated matches |automated matches |Burkholderia pseudomallei [TaxId: 28450]
d2ywoa_ : (ALA16) (PHE40) [view usage] : c.47.1.10 |Thioredoxin fold |Thioredoxin-like |Glutathione peroxidase-like |Probable thiol-disulfide isomerase/thioredoxin TTHA0593 |Thermus thermophilus [TaxId: 274]
d3q4ub_ : (SER199) (ARG218) [view usage] : d.144.1.7 |Protein kinase-like (PK-like) |Protein kinase-like (PK-like) |Protein kinases, catalytic subunit |automated matches |Human (Homo sapiens) [TaxId: 9606]
d1af6a_ : (GLY251) (LEU273) [view usage] : f.4.3.2 |Transmembrane beta-barrels |Porins |Maltoporin-like |Maltoporin (also LamB protein) |Escherichia coli [TaxId: 562]
d1efta2 : (ARG385) (GLU405) [view usage] : b.44.1.1 |Elongation factor/aminomethyltransferase common domain |EF-Tu/eEF-1alpha/eIF2-gamma C-terminal domain |EF-Tu/eEF-1alpha/eIF2-gamma C-terminal domain |Elongation factor Tu (EF-Tu) |Thermus aquaticus [TaxId: 271]
d2csqa_ : (GLU40) (ASP85) [view usage] : b.34.2.0 |SH3-like barrel |SH3-domain |automated matches |automated matches |Human (Homo sapiens) [TaxId: 9606]
d2qzxa_ : (ASN28) (PRO49) [view usage] : b.50.1.2 |Acid proteases |Acid proteases |Pepsin-like |automated matches |Yeast (Candida albicans) [TaxId: 5476]
d1b23p2 : (ARG385) (GLU405) [view usage] : b.44.1.1 |Elongation factor/aminomethyltransferase common domain |EF-Tu/eEF-1alpha/eIF2-gamma C-terminal domain |EF-Tu/eEF-1alpha/eIF2-gamma C-terminal domain |Elongation factor Tu (EF-Tu) |Thermus aquaticus [TaxId: 271]
d2eo6a_ : (ASN111) (SER135) [view usage] : d.93.1.0 |SH2-like |SH2 domain |automated matches |automated matches |Mouse (Mus musculus) [TaxId: 10090]
d1cvma_ : (ASP314) (HIS342) [view usage] : b.68.3.1 |6-bladed beta-propeller |Thermostable phytase (3-phytase) |Thermostable phytase (3-phytase) |Thermostable phytase (3-phytase) |Bacillus amyloliquefaciens [TaxId: 1390]
d2qzwa_ : (ASN199) (SER219) [view usage] : b.50.1.2 |Acid proteases |Acid proteases |Pepsin-like |automated matches |Yeast (Candida albicans) [TaxId: 5476]
d2quya_ : (GLY56) (THR85) [view usage] : d.153.1.0 |Ntn hydrolase-like |N-terminal nucleophile aminohydrolases (Ntn hydrolases) |automated matches |automated matches |Bacillus sphaericus [TaxId: 1421]
d1k0ka_ : (GLY59) (ASP74) [view usage] : d.110.1.1 |Profilin-like |Profilin (actin-binding protein) |Profilin (actin-binding protein) |Profilin (actin-binding protein) |Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
d4kl5a_ : (VAL30) (GLY51) [view usage] : b.86.1.0 |Hedgehog/intein (Hint) domain |Hedgehog/intein (Hint) domain |automated matches |automated matches |Nostoc punctiforme [TaxId: 63737]
d1ecba2 : (PRO87) (ASN106) [view usage] : d.153.1.1 |Ntn hydrolase-like |N-terminal nucleophile aminohydrolases (Ntn hydrolases) |Class II glutamine amidotransferases |Glutamine PRPP amidotransferase, N-terminal domain |Escherichia coli [TaxId: 562]
d1ixxa_ : (CYS102) (ALA129) [view usage] : d.169.1.1 |C-type lectin-like |C-type lectin-like |C-type lectin domain |Snake coagglutinin alpha chain |Habu snake (Trimeresurus flavoviridis) [TaxId: 88087]
d1jnpa_ : (VAL37) (LEU76) [view usage] : b.63.1.1 |Oncogene products |Oncogene products |Oncogene products |p14-TCL1 |Mouse (Mus musculus) [TaxId: 10090]
d1y4ha1 : (SER374) (GLY392) [view usage] : d.3.1.1 |Cysteine proteinases |Cysteine proteinases |Papain-like |Staphopain SspB |Staphylococcus aureus [TaxId: 1280]
d1dara1 : (PRO287) (PHE314) [view usage] : b.43.3.1 |Reductase/isomerase/elongation factor common domain |Translation proteins |Elongation factors |Elongation factor G (EF-G), domain II |Thermus thermophilus [TaxId: 274]
d1im0a_ : (LEU120) (LEU158) [view usage] : f.4.2.1 |Transmembrane beta-barrels |Outer membrane phospholipase A (OMPLA) |Outer membrane phospholipase A (OMPLA) |Outer membrane phospholipase A (OMPLA) |Escherichia coli [TaxId: 562]
d3r7kc1 : (SER216) (PRO240) [view usage] : e.6.1.0 |Acyl-CoA dehydrogenase NM domain-like |Acyl-CoA dehydrogenase NM domain-like |automated matches |automated matches |Mycobacterium abscessus [TaxId: 561007]
d2dxua1 : (THR43) (SER67) [view usage] : d.104.1.2 |Class II aaRS and biotin synthetases |Class II aaRS and biotin synthetases |Biotin holoenzyme synthetase |Biotin--[acetyl-CoA-carboxylase] ligase catalytic domain |Pyrococcus horikoshii [TaxId: 53953]
d2cvba1 : (ALA16) (PHE40) [view usage] : c.47.1.10 |Thioredoxin fold |Thioredoxin-like |Glutathione peroxidase-like |Probable thiol-disulfide isomerase/thioredoxin TTHA0593 |Thermus thermophilus [TaxId: 274]
d2hg0a1 : (ILE270) (GLU293) [view usage] : f.10.1.0 |Viral glycoprotein, central and dimerisation domains |Viral glycoprotein, central and dimerisation domains |automated matches |automated matches |West Nile virus [TaxId: 11082]
d1s9ha_ : (LYS398) (SER420) [view usage] : c.37.1.20 |P-loop containing nucleoside triphosphate hydrolases |P-loop containing nucleoside triphosphate hydrolases |Extended AAA-ATPase domain |Rep 40 protein helicase domain |Adeno-associated virus 2, AAV2 [TaxId: 10804]
d1pooa_ : (ASP314) (HIS342) [view usage] : b.68.3.1 |6-bladed beta-propeller |Thermostable phytase (3-phytase) |Thermostable phytase (3-phytase) |Thermostable phytase (3-phytase) |Bacillus amyloliquefaciens [TaxId: 1390]
d1nega_ : (LYS43) (ALA64) [view usage] : b.34.2.1 |SH3-like barrel |SH3-domain |SH3-domain |alpha-Spectrin, SH3 domain |Chicken (Gallus gallus) [TaxId: 9031]
d2evca_ : (GLU167) (PRO197) [view usage] : d.127.1.1 |Creatinase/aminopeptidase |Creatinase/aminopeptidase |Creatinase/aminopeptidase |Methionine aminopeptidase |Escherichia coli [TaxId: 562]
d4iucl_ : (ALA3) (PRO22) [view usage] : e.18.1.0 |HydB/Nqo4-like |HydB/Nqo4-like |automated matches |automated matches |Ralstonia eutropha [TaxId: 381666]
d1qz2a2 : (SER217) (GLU257) [view usage] : d.26.1.1 |FKBP-like |FKBP-like |FKBP immunophilin/proline isomerase |FKBP52, N-terminal domains |Human (Homo sapiens) [TaxId: 9606]
d2g5fa1 : (ASP44) (ASP67) [view usage] : d.161.1.1 |ADC synthase |ADC synthase |ADC synthase |Salicylate synthase MbtI |Mycobacterium tuberculosis [TaxId: 1773]
d2p0ka1 : (SER61) (GLY85) [view usage] : b.34.9.0 |SH3-like barrel |Tudor/PWWP/MBT |automated matches |automated matches |Human (Homo sapiens) [TaxId: 9606]
d1ak4a_ : (GLY50) (ALA103) [view usage] : b.62.1.1 |Cyclophilin-like |Cyclophilin-like |Cyclophilin (peptidylprolyl isomerase) |Cyclophilin (eukaryotic) |Human (Homo sapiens), variant A [TaxId: 9606]
d2f7fa1 : (GLU392) (LEU417) [view usage] : c.1.17.1 |TIM beta/alpha-barrel |Nicotinate/Quinolinate PRTase C-terminal domain-like |NadC C-terminal domain-like |Putative nicotinate phosphoribosyltransferase EF2626 |Enterococcus faecalis [TaxId: 1351]
d4laxa2 : (SER217) (LYS256) [view usage] : d.26.1.1 |FKBP-like |FKBP-like |FKBP immunophilin/proline isomerase |FKBP52, N-terminal domains |Human (Homo sapiens) [TaxId: 9606]
d1vbla_ : (PHE172) (GLY196) [view usage] : b.80.1.0 |Single-stranded right-handed beta-helix |Pectin lyase-like |automated matches |automated matches |Bacillus sp. [TaxId: 132676]
d1wcdj1 : (GLY176) (THR209) [view usage] : b.121.4.9 |Nucleoplasmin-like/VP (viral coat and capsid proteins) |Positive stranded ssRNA viruses |Birnaviridae-like VP |Birnavirus VP2 |Infectious bursal disease virus [TaxId: 10995]
List of distinct SCOP folds where this concept is used (in one or more of its domains):
b.68, b.80, b.70, c.1, c.2, i.1, b.47, c.93, b.50, e.18, c.23, f.4, d.144, b.40, c.37, d.104, c.47, e.6, d.153, d.171,
b.60, b.18, d.169, b.121, d.3, d.127, b.1, d.110, d.38, b.62, b.34, b.43, f.47, b.87, d.93, d.26, b.44, g.41, d.161, f.10,
b.86, b.159, d.302, b.46, b.63