Tableau information
Concept source: d1y18b1 amino acid (a.a.) range (HIS100)(VAL111)
nSSEs in this Concept: 3
String of secondary struct.elems. (SSEs) defining this concept: EEE
Each SSE's a.a.range: (start resi) (end resi) SSEtype (H=Helix; E=Strand) followed by a numeric SSE ID:
(HIS100) (LEU100) E1
(ASP101) (GLN105) E2
(THR107) (VAL111) E3
Orientation angles° of SSE-pairs; those in contact shown in bold font
E1
E2 -12.5° E2
E3 -72.3° -60.6°
Footnote: Inferred from this concept's usages (listed below) was the angular variance of 1σ = ±9.9° about each orientation angle shown above.
Loci of concept usages (shown as a range of a.a. residue ids) in SCOP(v2.05) domains, along with their brief legend taken from SCOP
d1o7oa_ : (THR330) (LYS359) [view usage] : c.68.1.9 |Nucleotide-diphospho-sugar transferases |Nucleotide-diphospho-sugar transferases |alpha-1,3-galactosyltransferase-like |alpha-1,3-galactosyltransferase catalytic domain |Cow (Bos taurus) [TaxId: 9913]
d2e9ga_ : (PRO8) (GLU22) [view usage] : b.1.10.0 |Immunoglobulin-like beta-sandwich |Clathrin adaptor appendage domain |automated matches |automated matches |Human (Homo sapiens) [TaxId: 9606]
d1mzya1 : (LEU44) (GLN91) [view usage] : b.6.1.3 |Cupredoxin-like |Cupredoxins |Multidomain cupredoxins |Nitrite reductase, NIR |Rhodobacter sphaeroides [TaxId: 1063]
d1mvub_ : (TYR104) (PRO120) [view usage] : b.1.1.1 |Immunoglobulin-like beta-sandwich |Immunoglobulin |V set domains (antibody variable domain-like) |Immunoglobulin heavy chain variable domain, VH |Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]
d1dg1g2 : (GLU348) (HIS364) [view usage] : b.44.1.1 |Elongation factor/aminomethyltransferase common domain |EF-Tu/eEF-1alpha/eIF2-gamma C-terminal domain |EF-Tu/eEF-1alpha/eIF2-gamma C-terminal domain |Elongation factor Tu (EF-Tu) |Escherichia coli [TaxId: 562]
d1c8nb_ : (VAL251) (GLU268) [view usage] : b.121.4.7 |Nucleoplasmin-like/VP (viral coat and capsid proteins) |Positive stranded ssRNA viruses |Tombusviridae-like VP |Necrovirus coat protein |TNV (Tobacco necrosis virus) [TaxId: 12054]
d3vfqa1 : (GLY857) (LYS871) [view usage] : c.50.1.0 |Macro domain-like |Macro domain-like |automated matches |automated matches |Human (Homo sapiens) [TaxId: 9606]
d1vzta_ : (THR330) (LYS359) [view usage] : c.68.1.9 |Nucleotide-diphospho-sugar transferases |Nucleotide-diphospho-sugar transferases |alpha-1,3-galactosyltransferase-like |alpha-1,3-galactosyltransferase catalytic domain |Cow (Bos taurus) [TaxId: 9913]
d1fnsh1 : (TYR319) (VAL334) [view usage] : b.1.1.1 |Immunoglobulin-like beta-sandwich |Immunoglobulin |V set domains (antibody variable domain-like) |Immunoglobulin heavy chain variable domain, VH |Mouse (Mus musculus), cluster 5 [TaxId: 10090]
d1yipa2 : (PRO199) (PRO216) [view usage] : b.121.1.2 |Nucleoplasmin-like/VP (viral coat and capsid proteins) |PHM/PNGase F |Peptidylglycine alpha-hydroxylating monooxygenase, PHM |Peptidylglycine alpha-hydroxylating monooxygenase, PHM |Norway rat (Rattus norvegicus) [TaxId: 10116]
d4keha_ : (THR114) (ARG136) [view usage] : d.38.1.2 |Thioesterase/thiol ester dehydrase-isomerase |Thioesterase/thiol ester dehydrase-isomerase |beta-Hydroxydecanol thiol ester dehydrase |beta-Hydroxydecanol thiol ester dehydrase |Escherichia coli [TaxId: 562]
d1mf2h1 : (GLY100) (SER112) [view usage] : b.1.1.1 |Immunoglobulin-like beta-sandwich |Immunoglobulin |V set domains (antibody variable domain-like) |Immunoglobulin heavy chain variable domain, VH |Mouse (Mus musculus), cluster 2.2 [TaxId: 10090]
d1it9h1 : (ASN104) (SER120) [view usage] : b.1.1.1 |Immunoglobulin-like beta-sandwich |Immunoglobulin |V set domains (antibody variable domain-like) |Immunoglobulin heavy chain variable domain, VH |Engineered (including hybrid species)
d1hb5b_ : (LYS365) (THR384) [view usage] : i.6.1.1 |Viruses and virus-receptor complexes |Viruses and virus-receptor complexes |Viruses and virus-receptor complexes |p3 shell |Bacteriophage PRD1 [TaxId: 10658]
d4iw3b3 : (GLU352) (LYS368) [view usage] : b.44.1.0 |Elongation factor/aminomethyltransferase common domain |EF-Tu/eEF-1alpha/eIF2-gamma C-terminal domain |automated matches |automated matches |Pseudomonas putida [TaxId: 160488]
d2vfzb_ : (THR1330) (GLU1360) [view usage] : c.68.1.9 |Nucleotide-diphospho-sugar transferases |Nucleotide-diphospho-sugar transferases |alpha-1,3-galactosyltransferase-like |alpha-1,3-galactosyltransferase catalytic domain |Cow (Bos taurus) [TaxId: 9913]
d1c8na_ : (VAL251) (GLU268) [view usage] : b.121.4.7 |Nucleoplasmin-like/VP (viral coat and capsid proteins) |Positive stranded ssRNA viruses |Tombusviridae-like VP |Necrovirus coat protein |TNV (Tobacco necrosis virus) [TaxId: 12054]
d1opgh1 : (ASN108) (VAL123) [view usage] : b.1.1.1 |Immunoglobulin-like beta-sandwich |Immunoglobulin |V set domains (antibody variable domain-like) |Immunoglobulin heavy chain variable domain, VH |Mouse (Mus musculus), cluster 2.2 [TaxId: 10090]
d2djsa1 : (PRO8) (MET21) [view usage] : b.1.2.1 |Immunoglobulin-like beta-sandwich |Fibronectin type III |Fibronectin type III |Ephrin type-B receptor 1 |Human (Homo sapiens) [TaxId: 9606]
d1etzb1 : (SER108) (SER126) [view usage] : b.1.1.1 |Immunoglobulin-like beta-sandwich |Immunoglobulin |V set domains (antibody variable domain-like) |Immunoglobulin heavy chain variable domain, VH |Mouse (Mus musculus), cluster 6 [TaxId: 10090]
d4kehb_ : (THR114) (ARG136) [view usage] : d.38.1.2 |Thioesterase/thiol ester dehydrase-isomerase |Thioesterase/thiol ester dehydrase-isomerase |beta-Hydroxydecanol thiol ester dehydrase |beta-Hydroxydecanol thiol ester dehydrase |Escherichia coli [TaxId: 562]
d1by3a_ : (THR295) (GLY316) [view usage] : f.4.3.3 |Transmembrane beta-barrels |Porins |Ligand-gated protein channel |Ferric hydroxamate uptake receptor FhuA |Escherichia coli [TaxId: 562]
d2fb4h1 : (ALA104) (SER117) [view usage] : b.1.1.1 |Immunoglobulin-like beta-sandwich |Immunoglobulin |V set domains (antibody variable domain-like) |Immunoglobulin heavy chain variable domain, VH |Human (Homo sapiens), cluster 3 [TaxId: 9606]
d1q1jh1 : (GLU100) (VAL111) [view usage] : b.1.1.1 |Immunoglobulin-like beta-sandwich |Immunoglobulin |V set domains (antibody variable domain-like) |Immunoglobulin heavy chain variable domain, VH |Human (Homo sapiens), cluster 4 [TaxId: 9606]
d1vzua_ : (THR330) (LYS359) [view usage] : c.68.1.9 |Nucleotide-diphospho-sugar transferases |Nucleotide-diphospho-sugar transferases |alpha-1,3-galactosyltransferase-like |alpha-1,3-galactosyltransferase catalytic domain |Cow (Bos taurus) [TaxId: 9913]
d1y18b1 : (HIS100) (VAL111) [view usage] : b.1.1.1 |Immunoglobulin-like beta-sandwich |Immunoglobulin |V set domains (antibody variable domain-like) |Immunoglobulin heavy chain variable domain, VH |Human (Homo sapiens), cluster 3 [TaxId: 9606]
d1an7a_ : (PRO74) (GLY96) [view usage] : d.140.1.1 |Ribosomal protein S8 |Ribosomal protein S8 |Ribosomal protein S8 |Ribosomal protein S8 |Thermus thermophilus [TaxId: 274]
List of distinct SCOP folds where this concept is used (in one or more of its domains):
c.68, i.6, f.4, b.121, b.6, b.1, d.140, d.38, c.50, b.44