Tableau information
Concept source: d1nega_ amino acid (a.a.) range (ARG21)(ASN47)
nSSEs in this Concept: 3
String of secondary struct.elems. (SSEs) defining this concept: EEE
Each SSE's a.a.range: (start resi) (end resi) SSEtype (H=Helix; E=Strand) followed by a numeric SSE ID:
(ARG21) (LYS26) E1
(GLY28) (THR32) E2
(LYS43) (ASN47) E3
Orientation angles° of SSE-pairs; those in contact shown in bold font
E1
E2 142.5° E2
E3 56.0° 108.8°
Footnote: Inferred from this concept's usages (listed below) was the angular variance of 1σ = ±8.1° about each orientation angle shown above.
Loci of concept usages (shown as a range of a.a. residue ids) in SCOP(v2.05) domains, along with their brief legend taken from SCOP
d3fhua_ : (GLY141) (ALA156) [view usage] : d.24.1.1 |Pili subunits |Pili subunits |Pilin |automated matches |Salmonella typhi [TaxId: 601]
d1b3qa2 : (GLU608) (GLY631) [view usage] : b.40.7.1 |OB-fold |CheW-like |CheW-like |Histidine kinase CheA, C-terminal domain |Thermotoga maritima [TaxId: 2336]
d1kiub2 : (PHE209) (ALA234) [view usage] : b.2.3.2 |Common fold of diphtheria toxin/transcription factors/cytochrome f |Bacterial adhesins |Pilus subunits |Mannose-specific adhesin FimH |Escherichia coli [TaxId: 562]
d3bjva_ : (GLU87) (ALA104) [view usage] : d.112.1.0 |Phoshotransferase/anion transport protein |Phoshotransferase/anion transport protein |automated matches |automated matches |Streptococcus mutans [TaxId: 210007]
d4n6fa_ : (TRP14) (GLU31) [view usage] : c.1.31.0 |TIM beta/alpha-barrel |ThiG-like |automated matches |automated matches |Amycolatopsis orientalis [TaxId: 797057]
d2cmzc_ : (GLY313) (ALA336) [view usage] : e.76.1.2 |Viral glycoprotein ectodomain-like |Viral glycoprotein ectodomain-like |Spike glycoprotein-like |automated matches |Vesicular stomatitis indiana virus [TaxId: 11277]
d3t5pb_ : (VAL126) (GLY143) [view usage] : e.52.1.0 |NAD kinase/diacylglycerol kinase-like |NAD kinase/diacylglycerol kinase-like |automated matches |automated matches |Bacillus anthracis [TaxId: 260799]
d1vbga2 : (GLU497) (PRO517) [view usage] : c.8.1.1 |The "swivelling" beta/beta/alpha domain |Phosphohistidine domain |Pyruvate phosphate dikinase, central domain |Pyruvate phosphate dikinase, central domain |Maize (Zea mays) [TaxId: 4577]
d2oqtd_ : (LYS87) (ALA105) [view usage] : d.112.1.0 |Phoshotransferase/anion transport protein |Phoshotransferase/anion transport protein |automated matches |automated matches |Streptococcus pyogenes [TaxId: 301447]
d1bg2a_ : (ASP37) (SER54) [view usage] : c.37.1.9 |P-loop containing nucleoside triphosphate hydrolases |P-loop containing nucleoside triphosphate hydrolases |Motor proteins |Kinesin |Human (Homo sapiens) [TaxId: 9606]
d1wdjb_ : (SER72) (GLU91) [view usage] : c.52.1.27 |Restriction endonuclease-like |Restriction endonuclease-like |Hypothetical protein TT1808 (TTHA1514) |Hypothetical protein TT1808 (TTHA1514) |Thermus thermophilus [TaxId: 274]
d3o0da_ : (GLY246) (LYS271) [view usage] : c.69.1.0 |alpha/beta-Hydrolases |alpha/beta-Hydrolases |automated matches |automated matches |Yarrowia lipolytica [TaxId: 4952]
d1ze3h_ : (PHE209) (ALA234) [view usage] : b.2.3.2 |Common fold of diphtheria toxin/transcription factors/cytochrome f |Bacterial adhesins |Pilus subunits |Mannose-specific adhesin FimH |Escherichia coli [TaxId: 562]
d2fi9a1 : (GLY24) (ILE40) [view usage] : c.103.1.1 |MTH938-like |MTH938-like |MTH938-like |Hypothetical outer membrane protein BH05650 |Bartonella henselae [TaxId: 38323]
d1vqwa2 : (ARG268) (CYS287) [view usage] : c.3.1.5 |FAD/NAD(P)-binding domain |FAD/NAD(P)-binding domain |FAD/NAD-linked reductases, N-terminal and central domains |Flavin-dependent monoxygenase SPBP16F5.08c |Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]
d1v2ia_ : (VAL503) (TYR530) [view usage] : b.68.1.1 |6-bladed beta-propeller |Sialidases |Sialidases (neuraminidases) |Hemagglutinin-neuraminidase glycoprotein |Human parainfluenza virus type 3 [TaxId: 11216]
d4cyvc_ : (ALA21) (VAL43) [view usage] : b.19.1.0 |Viral protein domain |Viral protein domain |automated matches |automated matches |Influenza a virus (a/mallard/sweden/51/2002 (h10n2)) [TaxId: 757360]
d3u53a_ : (ALA23) (HIS44) [view usage] : d.113.1.1 |Nudix |Nudix |MutT-like |automated matches |Human (Homo sapiens) [TaxId: 9606]
d4tmza2 : (ARG794) (ALA819) [view usage] : b.43.3.0 |Reductase/isomerase/elongation factor common domain |Translation proteins |automated matches |automated matches |Chaetomium thermophilum [TaxId: 209285]
d1th7b_ : (ASP49) (GLY69) [view usage] : b.38.1.1 |Sm-like fold |Sm-like ribonucleoproteins |Sm motif of small nuclear ribonucleoproteins, SNRNP |Archaeal homoheptameric Sm protein |Sulfolobus solfataricus [TaxId: 2287]
d4mzea_ : (VAL503) (GLY529) [view usage] : b.68.1.1 |6-bladed beta-propeller |Sialidases |Sialidases (neuraminidases) |automated matches |Human parainfluenza 3 virus [TaxId: 11217]
d1le5b2 : (TYR41) (LYS74) [view usage] : b.2.5.3 |Common fold of diphtheria toxin/transcription factors/cytochrome f |p53-like transcription factors |Rel/Dorsal transcription factors, DNA-binding domain |p50 subunit of NF-kappa B (NFKB), N-terminal domain |Mouse (Mus musculus) [TaxId: 10090]
d3srga_ : (LYS84) (GLY116) [view usage] : b.68.6.2 |6-bladed beta-propeller |Calcium-dependent phosphotriesterase |Serum paraoxonase/arylesterase 1, PON1 |Serum paraoxonase/arylesterase 1, PON1 |Artificial gene [TaxId: 32630]
d2plfa1 : (SER277) (PRO291) [view usage] : b.43.3.1 |Reductase/isomerase/elongation factor common domain |Translation proteins |Elongation factors |Initiation factor eIF2 gamma subunit, domain II |Sulfolobus solfataricus [TaxId: 2287]
d4cyva_ : (ALA21) (VAL43) [view usage] : b.19.1.0 |Viral protein domain |Viral protein domain |automated matches |automated matches |Influenza a virus (a/mallard/sweden/51/2002 (h10n2)) [TaxId: 757360]
d1wdta1 : (HIS327) (ALA344) [view usage] : b.43.3.1 |Reductase/isomerase/elongation factor common domain |Translation proteins |Elongation factors |Elongation factor G (EF-G), domain II |Thermus thermophilus, EF-G-2 [TaxId: 274]
d3anxb_ : (LYS288) (PRO311) [view usage] : c.66.1.17 |S-adenosyl-L-methionine-dependent methyltransferases |S-adenosyl-L-methionine-dependent methyltransferases |Spermidine synthase |automated matches |Thermus thermophilus HB8 [TaxId: 300852]
d2ch4a1 : (MET610) (GLY631) [view usage] : b.40.7.1 |OB-fold |CheW-like |CheW-like |Histidine kinase CheA, C-terminal domain |Thermotoga maritima [TaxId: 2336]
d1gted2 : (ILE533) (ALA551) [view usage] : c.1.4.1 |TIM beta/alpha-barrel |FMN-linked oxidoreductases |FMN-linked oxidoreductases |Dihydropyrimidine dehydrogenase, domain 4 |Pig (Sus scrofa) [TaxId: 9823]
d4d00c_ : (ALA11) (VAL33) [view usage] : b.19.1.0 |Viral protein domain |Viral protein domain |automated matches |automated matches |Influenza virus a/jiangxi- donghu/346/2013 (h10n8) [TaxId: 11309]
d3tk8c_ : (ALA111) (PHE129) [view usage] : b.81.1.2 |Single-stranded left-handed beta-helix |Trimeric LpxA-like enzymes |Tetrahydrodipicolinate-N-succinlytransferase, THDP-succinlytransferase, DapD |automated matches |Burkholderia pseudomallei [TaxId: 320372]
d1ag4a_ : (GLY14) (ASP37) [view usage] : b.11.1.1 |gamma-Crystallin-like |gamma-Crystallin-like |Crystallins/Ca-binding development proteins |Spherulin 3a (S3a) |Slime mold (Physarum polycephalum) [TaxId: 5791]
d1e4ea1 : (HIS76) (LEU98) [view usage] : c.30.1.2 |PreATP-grasp domain |PreATP-grasp domain |D-Alanine ligase N-terminal domain |D-alanine:D-lactate ligase VanA, N-domain |Enterococcus faecium [TaxId: 1352]
d2ok5a4 : (GLY55) (ILE76) [view usage] : g.18.1.1 |Complement control module/SCR domain |Complement control module/SCR domain |Complement control module/SCR domain |Complement factor B |Human (Homo sapiens) [TaxId: 9606]
d4m78c_ : (ASP43) (GLY70) [view usage] : b.38.1.0 |Sm-like fold |Sm-like ribonucleoproteins |automated matches |automated matches |Baker's yeast (Saccharomyces cerevisiae) [TaxId: 559292]
d4tmzb2 : (ARG794) (ALA819) [view usage] : b.43.3.0 |Reductase/isomerase/elongation factor common domain |Translation proteins |automated matches |automated matches |Chaetomium thermophilum [TaxId: 209285]
d2fcpa_ : (ASN103) (ASP122) [view usage] : f.4.3.3 |Transmembrane beta-barrels |Porins |Ligand-gated protein channel |Ferric hydroxamate uptake receptor FhuA |Escherichia coli [TaxId: 562]
d1nbfa_ : (GLY326) (SER353) [view usage] : d.3.1.9 |Cysteine proteinases |Cysteine proteinases |Ubiquitin carboxyl-terminal hydrolase, UCH |Ubiquitin carboxyl-terminal hydrolase 7 (USP7, HAUSP) |Human (Homo sapiens) [TaxId: 9606]
d4d00a_ : (ALA11) (VAL33) [view usage] : b.19.1.0 |Viral protein domain |Viral protein domain |automated matches |automated matches |Influenza virus a/jiangxi- donghu/346/2013 (h10n8) [TaxId: 11309]
d1bhya2 : (VAL375) (ALA398) [view usage] : c.3.1.5 |FAD/NAD(P)-binding domain |FAD/NAD(P)-binding domain |FAD/NAD-linked reductases, N-terminal and central domains |Dihydrolipoamide dehydrogenase |Neisseria meningitidis [TaxId: 487]
d1gc5a_ : (ARG191) (ASN209) [view usage] : c.72.1.3 |Ribokinase-like |Ribokinase-like |ADP-specific Phosphofructokinase/Glucokinase |ADP-dependent glucokinase |Thermococcus litoralis [TaxId: 2265]
d1bsha2 : (TYR4) (GLY27) [view usage] : b.93.1.1 |Epsilon subunit of F1F0-ATP synthase N-terminal domain |Epsilon subunit of F1F0-ATP synthase N-terminal domain |Epsilon subunit of F1F0-ATP synthase N-terminal domain |Epsilon subunit of F1F0-ATP synthase N-terminal domain |Escherichia coli [TaxId: 562]
d1h7xa2 : (ILE533) (ALA551) [view usage] : c.1.4.1 |TIM beta/alpha-barrel |FMN-linked oxidoreductases |FMN-linked oxidoreductases |Dihydropyrimidine dehydrogenase, domain 4 |Pig (Sus scrofa) [TaxId: 9823]
List of distinct SCOP folds where this concept is used (in one or more of its domains):
b.68, c.1, b.19, c.69, b.81, c.66, c.72, f.4, b.40, c.37, d.3, b.2, c.8, c.52, b.34, c.3, b.11, b.38, c.30, b.43,
d.113, e.52, d.112, g.18, d.24, e.76, c.103, b.93