Tableau information
Concept source: d4ky8a2 amino acid (a.a.) range (THR480)(TYR512)
nSSEs in this Concept: 3
String of secondary struct.elems. (SSEs) defining this concept: EEE
Each SSE's a.a.range: (start resi) (end resi) SSEtype (H=Helix; E=Strand) followed by a numeric SSE ID:
(THR480) (ARG491) E1
(ASP503) (GLY508) E2
(GLY508) (TYR512) E3
Orientation angles° of SSE-pairs; those in contact shown in bold font
E1
E2 156.7° E2
E3 -138.0° 63.8°
Footnote: Inferred from this concept's usages (listed below) was the angular variance of 1σ = ±7.8° about each orientation angle shown above.
Loci of concept usages (shown as a range of a.a. residue ids) in SCOP(v2.05) domains, along with their brief legend taken from SCOP
d4a4ib_ : (PHE85) (GLY101) [view usage] : b.40.4.0 |OB-fold |Nucleic acid-binding proteins |automated matches |automated matches |Human (Homo sapiens) [TaxId: 9606]
d3izbl_ : (PRO88) (LYS140) [view usage] : i.1.1.3 |Ribosome and ribosomal fragments |Ribosome and ribosomal fragments |Small subunit |Eukaryotic, cytoplasmic (40S subunit) |Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
d1jjac_ : (LEU179) (ARG195) [view usage] : c.88.1.1 |Glutaminase/Asparaginase |Glutaminase/Asparaginase |Glutaminase/Asparaginase |Asparaginase type II |Escherichia coli [TaxId: 562]
d3m2la_ : (ARG104) (LEU157) [view usage] : f.6.1.1 |Leukocidin-like |Leukocidin-like |Leukocidin (pore-forming toxin) |Alpha-hemolysin |Staphylococcus aureus [TaxId: 1280]
d3a0ja_ : (THR48) (GLU69) [view usage] : b.40.4.5 |OB-fold |Nucleic acid-binding proteins |Cold shock DNA-binding domain-like |automated matches |Thermus thermophilus HB8 [TaxId: 300852]
d2ra2f_ : (PRO4) (ASN37) [view usage] : b.38.1.6 |Sm-like fold |Sm-like ribonucleoproteins |YgdI/YgdR-like |Uncharacterized protein YgdI |Salmonella typhimurium [TaxId: 90371]
d4a4ia_ : (PHE85) (GLY101) [view usage] : b.40.4.0 |OB-fold |Nucleic acid-binding proteins |automated matches |automated matches |Human (Homo sapiens) [TaxId: 9606]
d1v9sb_ : (LEU47) (LEU77) [view usage] : c.61.1.1 |PRTase-like |PRTase-like |Phosphoribosyltransferases (PRTases) |automated matches |Thermus thermophilus HB8 [TaxId: 300852]
d1y1oa_ : (VAL62) (GLN81) [view usage] : c.52.1.28 |Restriction endonuclease-like |Restriction endonuclease-like |RecU-like |Recombination protein U (RecU)/PBP related factor A (PrfA) |Bacillus stearothermophilus [TaxId: 1422]
d1n73c1 : (GLY261) (ASP283) [view usage] : d.171.1.1 |Fibrinogen C-terminal domain-like |Fibrinogen C-terminal domain-like |Fibrinogen C-terminal domain-like |Fibrinogen C-terminal domains |Sea lamprey (Petromyzon marinus), gamma [TaxId: 7757]
d2h08a1 : (LYS29) (GLY50) [view usage] : c.61.1.0 |PRTase-like |PRTase-like |automated matches |automated matches |Human (Homo sapiens) [TaxId: 9606]
d1djoa_ : (LEU1189) (LYS1205) [view usage] : c.88.1.1 |Glutaminase/Asparaginase |Glutaminase/Asparaginase |Glutaminase/Asparaginase |Glutaminase-asparaginase |Pseudomonas sp., 7A [TaxId: 306]
d1eapb2 : (SER131) (PRO158) [view usage] : b.1.1.2 |Immunoglobulin-like beta-sandwich |Immunoglobulin |C1 set domains (antibody constant domain-like) |Immunoglobulin heavy chain gamma constant domain 1, CH1-gamma |Mouse (Mus musculus) [TaxId: 10090]
d1qtfa_ : (PRO81) (GLU103) [view usage] : b.47.1.1 |Trypsin-like serine proteases |Trypsin-like serine proteases |Prokaryotic proteases |Exfoliative toxin B |Staphylococcus aureus [TaxId: 1280]
d1exfa_ : (PRO68) (VAL85) [view usage] : b.47.1.1 |Trypsin-like serine proteases |Trypsin-like serine proteases |Prokaryotic proteases |Epidermolytic (exfoliative) toxin A |Staphylococcus aureus [TaxId: 1280]
d4a75a_ : (PHE88) (GLY104) [view usage] : b.40.4.0 |OB-fold |Nucleic acid-binding proteins |automated matches |automated matches |Xenopus (Silurana) tropicalis [TaxId: 8364]
d3hj3a2 : (GLN486) (TYR512) [view usage] : d.117.1.1 |Thymidylate synthase/dCMP hydroxymethylase |Thymidylate synthase/dCMP hydroxymethylase |Thymidylate synthase/dCMP hydroxymethylase |automated matches |Cryptosporidium hominis [TaxId: 237895]
d2ra2d_ : (PRO4) (ASP35) [view usage] : b.38.1.6 |Sm-like fold |Sm-like ribonucleoproteins |YgdI/YgdR-like |Uncharacterized protein YgdI |Salmonella typhimurium [TaxId: 90371]
d1i4va_ : (VAL86) (ASN111) [view usage] : b.87.1.1 |LexA/Signal peptidase |LexA/Signal peptidase |LexA-related |UmuD' |Escherichia coli [TaxId: 562]
d3cb2a1 : (PHE51) (LEU69) [view usage] : c.32.1.0 |Tubulin nucleotide-binding domain-like |Tubulin nucleotide-binding domain-like |automated matches |automated matches |Human (Homo sapiens) [TaxId: 9606]
d1emsa2 : (LEU130) (GLU152) [view usage] : d.160.1.1 |Carbon-nitrogen hydrolase |Carbon-nitrogen hydrolase |Nitrilase |NIT-FHIT fusion protein, N-terminal domain |Nematode (Caenorhabditis elegans) [TaxId: 6239]
d1vsta_ : (LEU47) (LEU79) [view usage] : c.61.1.1 |PRTase-like |PRTase-like |Phosphoribosyltransferases (PRTases) |Uracil PRTase, Upp |Sulfolobus solfataricus [TaxId: 2287]
d1cmsa_ : (VAL259) (GLN280) [view usage] : b.50.1.2 |Acid proteases |Acid proteases |Pepsin-like |Chymosin (synonym: renin) |Cow (Bos taurus) [TaxId: 9913]
d2gnnd_ : (THR71) (CYS104) [view usage] : g.17.1.0 |Cystine-knot cytokines |Cystine-knot cytokines |automated matches |automated matches |Orf virus [TaxId: 10259]
d3m4da_ : (ARG104) (LEU157) [view usage] : f.6.1.1 |Leukocidin-like |Leukocidin-like |Leukocidin (pore-forming toxin) |Alpha-hemolysin |Staphylococcus aureus [TaxId: 1280]
d2yeza2 : (ARG178) (PRO206) [view usage] : b.1.1.0 |Immunoglobulin-like beta-sandwich |Immunoglobulin |automated matches |automated matches |Chicken (Gallus gallus) [TaxId: 9031]
d3tvuc1 : (LEU1676) (GLU1697) [view usage] : c.14.1.4 |ClpP/crotonase |ClpP/crotonase |Biotin dependent carboxylase carboxyltransferase domain |automated matches |Baker's yeast (Saccharomyces cerevisiae) [TaxId: 559292]
d3sqfa_ : (TRP43) (ASP72) [view usage] : b.50.1.1 |Acid proteases |Acid proteases |Retroviral protease (retropepsin) |automated matches |Mason-pfizer monkey virus [TaxId: 11855]
d1w66a1 : (GLY132) (ARG152) [view usage] : d.104.1.3 |Class II aaRS and biotin synthetases |Class II aaRS and biotin synthetases |LplA-like |Lipoyltransferase LipB |Mycobacterium tuberculosis [TaxId: 1773]
d1e5ga1 : (SER45) (SER68) [view usage] : g.18.1.1 |Complement control module/SCR domain |Complement control module/SCR domain |Complement control module/SCR domain |Complement control protein |Vaccinia virus [TaxId: 10245]
d1nedb_ : (THR1) (GLY47) [view usage] : d.153.1.4 |Ntn hydrolase-like |N-terminal nucleophile aminohydrolases (Ntn hydrolases) |Proteasome subunits |HslV (ClpQ) protease |Escherichia coli [TaxId: 562]
d3bdub_ : (SER3) (ASP34) [view usage] : b.38.1.6 |Sm-like fold |Sm-like ribonucleoproteins |YgdI/YgdR-like |Uncharacterized protein ECA1013 |Erwinia carotovora [TaxId: 554]
d2fz6a_ : (ALA20) (GLN36) [view usage] : b.138.1.1 |Hydrophobin II, HfbII |Hydrophobin II, HfbII |Hydrophobin II, HfbII |automated matches |Hypocrea jecorina [TaxId: 51453]
d4a75c_ : (PHE88) (GLY104) [view usage] : b.40.4.0 |OB-fold |Nucleic acid-binding proteins |automated matches |automated matches |Xenopus (Silurana) tropicalis [TaxId: 8364]
d3i2za_ : (PHE52) (LEU69) [view usage] : b.40.4.5 |OB-fold |Nucleic acid-binding proteins |Cold shock DNA-binding domain-like |automated matches |Salmonella typhimurium [TaxId: 90371]
d2yf5a2 : (ARG178) (PRO206) [view usage] : b.1.1.0 |Immunoglobulin-like beta-sandwich |Immunoglobulin |automated matches |automated matches |Chicken (Gallus gallus) [TaxId: 9031]
d1uytc1 : (VAL1675) (GLU1697) [view usage] : c.14.1.4 |ClpP/crotonase |ClpP/crotonase |Biotin dependent carboxylase carboxyltransferase domain |Acetyl-coenzyme A carboxylase |Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
d3d5ua_ : (VAL100) (ARG121) [view usage] : d.144.1.0 |Protein kinase-like (PK-like) |Protein kinase-like (PK-like) |automated matches |automated matches |Zebrafish (Danio rerio) [TaxId: 7955]
d1gkga2 : (PRO1070) (ILE1092) [view usage] : g.18.1.1 |Complement control module/SCR domain |Complement control module/SCR domain |Complement control module/SCR domain |Complement receptor 1, cr1 |Human (Homo sapiens) [TaxId: 9606]
d1hrpa_ : (LYS63) (CYS84) [view usage] : g.17.1.4 |Cystine-knot cytokines |Cystine-knot cytokines |Gonadodropin/Follitropin |Glycoprotein hormones alpha chain (Gonadotropin A, Follitropin alpha) |Human (Homo sapiens) [TaxId: 9606]
d3rhpa_ : (ASN407) (GLY427) [view usage] : c.82.1.0 |ALDH-like |ALDH-like |automated matches |automated matches |Norway rat (Rattus norvegicus) [TaxId: 10116]
d3dj3b_ : (VAL12) (GLY35) [view usage] : b.36.1.0 |PDZ domain-like |PDZ domain-like |automated matches |automated matches |Mouse (Mus musculus) [TaxId: 10090]
d1zsoa1 : (PRO69) (GLY103) [view usage] : b.166.1.1 |MAL13P1.257-like |MAL13P1.257-like |MAL13P1.257-like |Hypothetical protein MAL13P1.257 |Malaria parasite (Plasmodium falciparum) [TaxId: 5833]
d2xkra_ : (SER371) (PHE391) [view usage] : a.104.1.0 |Cytochrome P450 |Cytochrome P450 |automated matches |automated matches |Mycobacterium tuberculosis [TaxId: 83332]
d1a12a_ : (SER145) (VAL164) [view usage] : b.69.5.1 |7-bladed beta-propeller |RCC1/BLIP-II |Regulator of chromosome condensation RCC1 |Regulator of chromosome condensation RCC1 |Human (Homo sapiens) [TaxId: 9606]
d1neda_ : (THR1) (GLY47) [view usage] : d.153.1.4 |Ntn hydrolase-like |N-terminal nucleophile aminohydrolases (Ntn hydrolases) |Proteasome subunits |HslV (ClpQ) protease |Escherichia coli [TaxId: 562]
d1k42a_ : (ASN38) (ASN66) [view usage] : b.18.1.14 |Galactose-binding domain-like |Galactose-binding domain-like |CBM4/9 |Carbohydrate binding module from a thermostable xylanase |Rhodothermus marinus [TaxId: 29549]
d3gg6a_ : (LEU106) (GLY126) [view usage] : d.113.1.0 |Nudix |Nudix |automated matches |automated matches |Human (Homo sapiens) [TaxId: 9606]
d1bg6a2 : (THR141) (ALA158) [view usage] : c.2.1.6 |NAD(P)-binding Rossmann-fold domains |NAD(P)-binding Rossmann-fold domains |6-phosphogluconate dehydrogenase-like, N-terminal domain |N-(1-D-carboxylethyl)-L-norvaline dehydrogenase |Arthrobacter, strain 1c [TaxId: 1663]
d3dj3a_ : (VAL12) (GLY35) [view usage] : b.36.1.0 |PDZ domain-like |PDZ domain-like |automated matches |automated matches |Mouse (Mus musculus) [TaxId: 10090]
d2g1na_ : (PRO261) (GLU283) [view usage] : b.50.1.2 |Acid proteases |Acid proteases |Pepsin-like |Chymosin (synonym: renin) |Human (Homo sapiens) [TaxId: 9606]
d1fq4a_ : (LEU258) (SER279) [view usage] : b.50.1.2 |Acid proteases |Acid proteases |Pepsin-like |Acid protease |Baker's yeast (Saccharomyces cerevisiae), proteinase A [TaxId: 4932]
d1fzva_ : (VAL80) (CYS113) [view usage] : g.17.1.1 |Cystine-knot cytokines |Cystine-knot cytokines |Platelet-derived growth factor-like |Placenta growth factor-1, PLGF-1 |Human (Homo sapiens) [TaxId: 9606]
d3k8xc1 : (VAL1675) (GLU1697) [view usage] : c.14.1.4 |ClpP/crotonase |ClpP/crotonase |Biotin dependent carboxylase carboxyltransferase domain |Acetyl-coenzyme A carboxylase |Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
d2yt8a_ : (GLY7) (ASP28) [view usage] : b.36.1.1 |PDZ domain-like |PDZ domain-like |PDZ domain |automated matches |Human (Homo sapiens) [TaxId: 9606]
d1e42a1 : (PRO710) (GLN733) [view usage] : b.1.10.1 |Immunoglobulin-like beta-sandwich |Clathrin adaptor appendage domain |Alpha-adaptin ear subdomain-like |Beta2-adaptin AP2 ear domain, N-terminal subdomain |Human (Homo sapiens) [TaxId: 9606]
d4os1a_ : (TYR94) (LYS110) [view usage] : b.47.1.2 |Trypsin-like serine proteases |Trypsin-like serine proteases |Eukaryotic proteases |Urokinase-type plasminogen activator (LMW U-PA), catalytic domain |Human (Homo sapiens) [TaxId: 9606]
d1r6va_ : (GLY637) (PHE677) [view usage] : c.41.1.1 |Subtilisin-like |Subtilisin-like |Subtilases |Fervidolysin |Fervidobacterium pennivorans [TaxId: 93466]
d1owea_ : (TYR99) (SER117) [view usage] : b.47.1.2 |Trypsin-like serine proteases |Trypsin-like serine proteases |Eukaryotic proteases |Urokinase-type plasminogen activator (LMW U-PA), catalytic domain |Human (Homo sapiens) [TaxId: 9606]
d1ripa_ : (LYS61) (GLU81) [view usage] : b.40.4.5 |OB-fold |Nucleic acid-binding proteins |Cold shock DNA-binding domain-like |Ribosomal protein S17 |Bacillus stearothermophilus [TaxId: 1422]
d3eb7a2 : (SER425) (GLY450) [view usage] : b.77.2.0 |beta-Prism I |delta-Endotoxin (insectocide), middle domain |automated matches |automated matches |Bacillus thuringiensis [TaxId: 1428]
d1yrza1 : (LEU1426) (ALA1447) [view usage] : b.29.1.23 |Concanavalin A-like lectins/glucanases |Concanavalin A-like lectins/glucanases |Beta-D-xylosidase C-terminal domain-like |Beta-D-xylosidase C-terminal domain |Bacillus halodurans [TaxId: 86665]
d1agja_ : (PRO88) (VAL107) [view usage] : b.47.1.1 |Trypsin-like serine proteases |Trypsin-like serine proteases |Prokaryotic proteases |Epidermolytic (exfoliative) toxin A |Staphylococcus aureus [TaxId: 1280]
d3tv5a1 : (LEU1676) (GLU1697) [view usage] : c.14.1.4 |ClpP/crotonase |ClpP/crotonase |Biotin dependent carboxylase carboxyltransferase domain |automated matches |Baker's yeast (Saccharomyces cerevisiae) [TaxId: 559292]
d3bdua1 : (SER3) (ASP34) [view usage] : b.38.1.6 |Sm-like fold |Sm-like ribonucleoproteins |YgdI/YgdR-like |Uncharacterized protein ECA1013 |Erwinia carotovora [TaxId: 554]
d3i2zb_ : (GLU51) (LEU69) [view usage] : b.40.4.5 |OB-fold |Nucleic acid-binding proteins |Cold shock DNA-binding domain-like |automated matches |Salmonella typhimurium [TaxId: 90371]
d3tz3c1 : (LEU1676) (GLU1697) [view usage] : c.14.1.4 |ClpP/crotonase |ClpP/crotonase |Biotin dependent carboxylase carboxyltransferase domain |automated matches |Baker's yeast (Saccharomyces cerevisiae) [TaxId: 559292]
d4ky8a2 : (THR480) (TYR512) [view usage] : d.117.1.1 |Thymidylate synthase/dCMP hydroxymethylase |Thymidylate synthase/dCMP hydroxymethylase |Thymidylate synthase/dCMP hydroxymethylase |Bifunctional enzyme dihydrofolate reductase-thymidylate synthase, TS domain |Cryptosporidium hominis [TaxId: 237895]
d2akka1 : (GLY42) (ALA72) [view usage] : b.34.11.2 |SH3-like barrel |Prokaryotic SH3-related domain |PhnA-like |Hypothetical protein RPA4501 |Rhodopseudomonas palustris [TaxId: 1076]
d3oedc2 : (GLU73) (PRO87) [view usage] : g.18.1.1 |Complement control module/SCR domain |Complement control module/SCR domain |Complement control module/SCR domain |automated matches |Human (Homo sapiens) [TaxId: 9606]
d1j2ea1 : (ASN119) (ASP136) [view usage] : b.70.3.1 |8-bladed beta-propeller |DPP6 N-terminal domain-like |DPP6 N-terminal domain-like |Dipeptidyl peptidase IV/CD26, N-terminal domain |Human (Homo sapiens) [TaxId: 9606]
d4j52a_ : (VAL114) (ARG135) [view usage] : d.144.1.0 |Protein kinase-like (PK-like) |Protein kinase-like (PK-like) |automated matches |automated matches |Human (Homo sapiens) [TaxId: 9606]
d3sqfb_ : (TRP43) (ASP72) [view usage] : b.50.1.1 |Acid proteases |Acid proteases |Retroviral protease (retropepsin) |automated matches |Mason-pfizer monkey virus [TaxId: 11855]
d1duea_ : (PRO88) (VAL107) [view usage] : b.47.1.1 |Trypsin-like serine proteases |Trypsin-like serine proteases |Prokaryotic proteases |Epidermolytic (exfoliative) toxin A |Staphylococcus aureus [TaxId: 1280]
d1owda_ : (LYS84) (SER104) [view usage] : b.47.1.2 |Trypsin-like serine proteases |Trypsin-like serine proteases |Eukaryotic proteases |Urokinase-type plasminogen activator (LMW U-PA), catalytic domain |Human (Homo sapiens) [TaxId: 9606]
d3sfca_ : (PRO256) (GLU278) [view usage] : b.50.1.2 |Acid proteases |Acid proteases |Pepsin-like |Chymosin (synonym: renin) |Human (Homo sapiens) [TaxId: 9606]
List of distinct SCOP folds where this concept is used (in one or more of its domains):
b.70, a.104, c.2, b.69, i.1, b.29, c.82, b.47, d.117, c.14, b.50, d.144, b.40, d.104, d.153, d.171, b.18, c.32, d.160, b.1,
c.41, b.77, c.61, c.52, b.34, b.38, c.88, b.87, d.113, g.17, b.36, g.18, f.6, b.138, b.166