Tableau information
Concept source: d1vlmb_ amino acid (a.a.) range (GLU170)(THR205)
nSSEs in this Concept: 3
String of secondary struct.elems. (SSEs) defining this concept: EEE
Each SSE's a.a.range: (start resi) (end resi) SSEtype (H=Helix; E=Strand) followed by a numeric SSE ID:
(GLU170) (GLN175) E1
(GLU186) (GLU192) E2
(PHE199) (THR205) E3
Orientation angles° of SSE-pairs; those in contact shown in bold font
E1
E2 151.6° E2
E3 167.8° -38.0°
Footnote: Inferred from this concept's usages (listed below) was the angular variance of 1σ = ±13.0° about each orientation angle shown above.
Loci of concept usages (shown as a range of a.a. residue ids) in SCOP(v2.05) domains, along with their brief legend taken from SCOP
d2dnca_ : (ALA62) (GLU84) [view usage] : b.84.1.0 |Barrel-sandwich hybrid |Single hybrid motif |automated matches |automated matches |Human (Homo sapiens) [TaxId: 9606]
d1e3xa2 : (ASP159) (ASP204) [view usage] : c.1.8.1 |TIM beta/alpha-barrel |(Trans)glycosidases |Amylase, catalytic domain |Bacterial alpha-amylase |Chimera (Bacillus amyloliquefaciens) and (Bacillus licheniformis) [TaxId: 1390]
d1yq9h1 : (LEU318) (TYR362) [view usage] : e.18.1.1 |HydB/Nqo4-like |HydB/Nqo4-like |Nickel-iron hydrogenase, large subunit |Nickel-iron hydrogenase, large subunit |Desulfovibrio gigas [TaxId: 879]
d1w9xa2 : (ASP163) (ASP209) [view usage] : c.1.8.1 |TIM beta/alpha-barrel |(Trans)glycosidases |Amylase, catalytic domain |Bacterial alpha-amylase |Bacillus halmapalus [TaxId: 79882]
d1coda_ : (CYS24) (THR56) [view usage] : g.7.1.1 |Snake toxin-like |Snake toxin-like |Snake venom toxins |Cobrotoxin II (ct2) |Taiwan cobra (Naja naja atra) [TaxId: 8656]
d1dtdb_ : (PHE9) (PRO36) [view usage] : g.30.1.1 |Carboxypeptidase inhibitor |Carboxypeptidase inhibitor |Carboxypeptidase inhibitor |Carboxypeptidase inhibitor |Medicinal leech (Hirudo medicinalis) [TaxId: 6421]
d1gbga_ : (ILE179) (LYS213) [view usage] : b.29.1.2 |Concanavalin A-like lectins/glucanases |Concanavalin A-like lectins/glucanases |Glycosyl hydrolases family 16 |Bacillus 1-3,1-4-beta-glucanase |Bacillus licheniformis [TaxId: 1402]
d2crma1 : (LYS17) (GLY47) [view usage] : b.1.2.1 |Immunoglobulin-like beta-sandwich |Fibronectin type III |Fibronectin type III |Fibronectin type-III domain containing protein 3a, FNDC3A (KIAA0970) |Human (Homo sapiens) [TaxId: 9606]
d2abzc1 : (PRO5) (PRO36) [view usage] : g.30.1.1 |Carboxypeptidase inhibitor |Carboxypeptidase inhibitor |Carboxypeptidase inhibitor |Carboxypeptidase inhibitor |Medicinal leech (Hirudo medicinalis) [TaxId: 6421]
d2gbca1 : (ASN319) (THR349) [view usage] : b.70.3.1 |8-bladed beta-propeller |DPP6 N-terminal domain-like |DPP6 N-terminal domain-like |automated matches |Norway rat (Rattus norvegicus) [TaxId: 10116]
d1lnza1 : (GLN112) (LYS156) [view usage] : b.117.1.1 |Obg-fold |Obg GTP-binding protein N-terminal domain |Obg GTP-binding protein N-terminal domain |Obg GTP-binding protein N-terminal domain |Bacillus subtilis [TaxId: 1423]
d1hvxa2 : (ASP162) (ASP207) [view usage] : c.1.8.1 |TIM beta/alpha-barrel |(Trans)glycosidases |Amylase, catalytic domain |Bacterial alpha-amylase |Bacillus stearothermophilus [TaxId: 1422]
d4q7ga_ : (GLY83) (SER116) [view usage] : f.6.1.1 |Leukocidin-like |Leukocidin-like |Leukocidin (pore-forming toxin) |automated matches |Staphylococcus aureus [TaxId: 282459]
d1iyua_ : (LYS53) (ALA75) [view usage] : b.84.1.1 |Barrel-sandwich hybrid |Single hybrid motif |Biotinyl/lipoyl-carrier proteins and domains |Lipoyl domain of dihydrolipoamide acetyltransferase |Azotobacter vinelandii [TaxId: 354]
d2x6ca2 : (GLU173) (PRO206) [view usage] : b.1.18.0 |Immunoglobulin-like beta-sandwich |E set domains |automated matches |automated matches |Magnetospirillum magnetotacticum [TaxId: 188]
d3b07a_ : (GLY58) (ASN92) [view usage] : f.6.1.1 |Leukocidin-like |Leukocidin-like |Leukocidin (pore-forming toxin) |automated matches |Staphylococcus aureus [TaxId: 158878]
d2ba0g2 : (PRO184) (ASP217) [view usage] : d.101.1.1 |Ribonuclease PH domain 2-like |Ribonuclease PH domain 2-like |Ribonuclease PH domain 2-like |Exosome complex exonuclease 2, ECX2 |Archaeoglobus fulgidus [TaxId: 2234]
d2mev3_ : (PRO63) (GLN81) [view usage] : b.121.4.1 |Nucleoplasmin-like/VP (viral coat and capsid proteins) |Positive stranded ssRNA viruses |Picornaviridae-like VP (VP1, VP2, VP3 and VP4) |Mengo encephalomyocarditis virus coat proteins |Mengovirus [TaxId: 12107]
d1eg9a1 : (ASP62) (TYR103) [view usage] : b.33.1.2 |ISP domain |ISP domain |Ring hydroxylating alpha subunit ISP domain |Naphthalene 1,2-dioxygenase alpha subunit, N-domain |Pseudomonas putida [TaxId: 303]
d1ti2a1 : (LEU842) (LYS866) [view usage] : b.52.2.2 |Double psi beta-barrel |ADC-like |Formate dehydrogenase/DMSO reductase, C-terminal domain |Transhydroxylase alpha subunit, AthL |Pelobacter acidigallici [TaxId: 35816]
d2mpua_ : (ASP37) (SER58) [view usage] : d.58.7.0 |Ferredoxin-like |RNA-binding domain, RBD |automated matches |automated matches |Barley (Hordeum vulgare) [TaxId: 4513]
d2ij0a2 : (TYR153) (ILE193) [view usage] : d.15.6.1 |beta-Grasp (ubiquitin-like) |Superantigen toxins, C-terminal domain |Superantigen toxins, C-terminal domain |Toxic shock syndrome toxin-1 (TSST-1) |Staphylococcus aureus [TaxId: 1280]
d1abta_ : (CYS23) (SER61) [view usage] : g.7.1.1 |Snake toxin-like |Snake toxin-like |Snake venom toxins |Bungarotoxin |Many-banded krait (Bungarus multicinctus), Alpha-bungarotoxin [TaxId: 8616]
d1a6ca3 : (SER352) (ASN395) [view usage] : b.121.4.2 |Nucleoplasmin-like/VP (viral coat and capsid proteins) |Positive stranded ssRNA viruses |Comoviridae-like VP |Nepovirus capsid protein |TRSV (Tobacco ringspot virus) [TaxId: 12282]
d1i78a_ : (GLN228) (THR257) [view usage] : f.4.4.1 |Transmembrane beta-barrels |OMPT-like |Outer membrane protease OMPT |Outer membrane protease OMPT |Escherichia coli [TaxId: 562]
d1qjva_ : (GLY302) (LYS329) [view usage] : b.80.1.5 |Single-stranded right-handed beta-helix |Pectin lyase-like |Pectin methylesterase |Pectin methylesterase PemA |Erwinia chrysanthemi [TaxId: 556]
d1aoca_ : (LEU149) (GLY169) [view usage] : g.17.1.5 |Cystine-knot cytokines |Cystine-knot cytokines |Coagulogen |Coagulogen |Japanese horseshoe crab (Tachypleus tridentatus) [TaxId: 6853]
d1r4pb_ : (THR48) (ASN69) [view usage] : b.40.2.1 |OB-fold |Bacterial enterotoxins |Bacterial AB5 toxins, B-subunits |Verotoxin-1/shiga-toxin, B-pentamer |Shigella dysenteriae, toxin II [TaxId: 622]
d1ghja_ : (ALA56) (GLY79) [view usage] : b.84.1.1 |Barrel-sandwich hybrid |Single hybrid motif |Biotinyl/lipoyl-carrier proteins and domains |Lipoyl domain of the 2-oxoglutarate dehydrogenase complex |Azotobacter vinelandii [TaxId: 354]
d1gyhb_ : (SER247) (ASN283) [view usage] : b.67.2.1 |5-bladed beta-propeller |Arabinanase/levansucrase/invertase |alpha-L-arabinanase-like |alpha-L-arabinanase |Cellvibrio cellulosa [TaxId: 155077]
d1gyha_ : (ASP246) (ASN283) [view usage] : b.67.2.1 |5-bladed beta-propeller |Arabinanase/levansucrase/invertase |alpha-L-arabinanase-like |alpha-L-arabinanase |Cellvibrio cellulosa [TaxId: 155077]
d1ppqa_ : (SER1000) (ARG1022) [view usage] : g.18.1.1 |Complement control module/SCR domain |Complement control module/SCR domain |Complement control module/SCR domain |Complement receptor 1, cr1 |Human (Homo sapiens) [TaxId: 9606]
d1jgka_ : (TYR25) (THR62) [view usage] : g.7.1.1 |Snake toxin-like |Snake toxin-like |Snake venom toxins |Candoxin |Malayan krait (Bungarus candidus) [TaxId: 92438]
d2ygta_ : (LYS118) (SER151) [view usage] : f.6.1.0 |Leukocidin-like |Leukocidin-like |automated matches |automated matches |Clostridium perfringens [TaxId: 1502]
d1xk5a_ : (ARG129) (ASP173) [view usage] : d.142.2.5 |ATP-grasp |DNA ligase/mRNA capping enzyme, catalytic domain |m3G-cap binding domain of snurportin-1 |m3G-cap binding domain of snurportin-1 |Human (Homo sapiens) [TaxId: 9606]
d2abxa_ : (GLU20) (SER61) [view usage] : g.7.1.1 |Snake toxin-like |Snake toxin-like |Snake venom toxins |Bungarotoxin |Many-banded krait (Bungarus multicinctus), Alpha-bungarotoxin [TaxId: 8616]
d1svqa_ : (LYS160) (GLY195) [view usage] : d.109.1.1 |Gelsolin-like |Actin depolymerizing proteins |Gelsolin-like |Severin, domain 2 |Slime mold (Dictyostelium discoideum) [TaxId: 44689]
d1gvia1 : (ARG83) (PHE119) [view usage] : b.1.18.2 |Immunoglobulin-like beta-sandwich |E set domains |E-set domains of sugar-utilizing enzymes |Maltogenic amylase, N-terminal domain N |Thermus sp. [TaxId: 275]
d1u0aa_ : (ILE179) (ASN214) [view usage] : b.29.1.2 |Concanavalin A-like lectins/glucanases |Concanavalin A-like lectins/glucanases |Glycosyl hydrolases family 16 |Bacillus 1-3,1-4-beta-glucanase |Paenibacillus macerans [TaxId: 44252]
d1iica2 : (THR324) (ASP356) [view usage] : d.108.1.2 |Acyl-CoA N-acyltransferases (Nat) |Acyl-CoA N-acyltransferases (Nat) |N-myristoyl transferase, NMT |N-myristoyl transferase, NMT |Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
d1ff4a_ : (ASN22) (GLY59) [view usage] : g.7.1.1 |Snake toxin-like |Snake toxin-like |Snake venom toxins |Muscarinic toxin |Green mamba (Dendroaspis angusticeps) [TaxId: 8618]
d4iaua_ : (GLN122) (ARG161) [view usage] : b.11.1.0 |gamma-Crystallin-like |gamma-Crystallin-like |automated matches |automated matches |Geodia cydonium [TaxId: 6047]
d2dika3 : (PRO86) (ASN108) [view usage] : d.142.1.5 |ATP-grasp |Glutathione synthetase ATP-binding domain-like |Pyruvate phosphate dikinase, N-terminal domain |Pyruvate phosphate dikinase, N-terminal domain |Clostridium symbiosum [TaxId: 1512]
d2arva_ : (THR84) (CYS115) [view usage] : g.17.1.2 |Cystine-knot cytokines |Cystine-knot cytokines |Transforming growth factor (TGF)-beta |Activin A (Inhibin beta A) |Human (Homo sapiens) [TaxId: 9606]
d1gyhd_ : (SER247) (ASN283) [view usage] : b.67.2.1 |5-bladed beta-propeller |Arabinanase/levansucrase/invertase |alpha-L-arabinanase-like |alpha-L-arabinanase |Cellvibrio cellulosa [TaxId: 155077]
d1g2ra_ : (LEU23) (LYS50) [view usage] : d.192.1.1 |YlxR-like |YlxR-like |YlxR-like |Hypothetical cytosolic protein SP0554 |Pneumococcus (Streptococcus pneumoniae) [TaxId: 1313]
List of distinct SCOP folds where this concept is used (in one or more of its domains):
b.80, b.70, c.1, d.58, b.29, b.67, c.66, e.18, f.4, b.40, b.121, b.1, d.108, b.84, b.52, d.142, d.109, b.11, d.15, g.17,
g.18, b.33, d.101, g.7, f.6, b.117, d.192, g.30