Tableau information
Concept source: d4l6ea_ amino acid (a.a.) range (LYS2939)(MSE2965)
nSSEs in this Concept: 3
String of secondary struct.elems. (SSEs) defining this concept: EEE
Each SSE's a.a.range: (start resi) (end resi) SSEtype (H=Helix; E=Strand) followed by a numeric SSE ID:
(LYS2939) (TRP2943) E1
(GLN2949) (GLY2954) E2
(GLY2956) (MSE2965) E3
Orientation angles° of SSE-pairs; those in contact shown in bold font
E1
E2 144.0° E2
E3 86.0° 70.8°
Footnote: Inferred from this concept's usages (listed below) was the angular variance of 1σ = ±10.2° about each orientation angle shown above.
Loci of concept usages (shown as a range of a.a. residue ids) in SCOP(v2.05) domains, along with their brief legend taken from SCOP
d1hpga_ : (GLY29) (GLY48) [view usage] : b.47.1.1 |Trypsin-like serine proteases |Trypsin-like serine proteases |Prokaryotic proteases |Glutamic acid-specific protease |Streptomyces griseus [TaxId: 1911]
d3q7ub_ : (LYS143) (PRO166) [view usage] : c.68.1.0 |Nucleotide-diphospho-sugar transferases |Nucleotide-diphospho-sugar transferases |automated matches |automated matches |Mycobacterium tuberculosis [TaxId: 83332]
d1vsac1 : (LYS8) (PHE51) [view usage] : b.43.3.2 |Reductase/isomerase/elongation factor common domain |Translation proteins |Ribosomal protein L3 |Ribosomal protein L3 |Thermus thermophilus [TaxId: 274]
d1j71a_ : (GLY200) (SER219) [view usage] : b.50.1.2 |Acid proteases |Acid proteases |Pepsin-like |Acid protease |Yeast (Candida tropicalis) [TaxId: 5482]
d2gu2a1 : (THR276) (SER309) [view usage] : c.56.5.7 |Phosphorylase/hydrolase-like |Zn-dependent exopeptidases |AstE/AspA-like |Aspartoacylase AspA |Norway rat (Rattus norvegicus) [TaxId: 10116]
d3ffna4 : (MET517) (ALA532) [view usage] : d.109.1.1 |Gelsolin-like |Actin depolymerizing proteins |Gelsolin-like |Gelsolin |Human (Homo sapiens) [TaxId: 9606]
d2wo3b_ : (GLY58) (ALA78) [view usage] : b.6.1.5 |Cupredoxin-like |Cupredoxins |Ephrin ectodomain |automated matches |Human (Homo sapiens) [TaxId: 9606]
d1qwza_ : (ILE156) (THR176) [view usage] : b.100.1.1 |Sortase |Sortase |Sortase |Sortase B |Staphylococcus aureus [TaxId: 1280]
d1usqa_ : (GLY42) (LEU72) [view usage] : b.2.3.6 |Common fold of diphtheria toxin/transcription factors/cytochrome f |Bacterial adhesins |Dr-family adhesin |DraA/Afimbrial adhesin Afa-III |Escherichia coli [TaxId: 562]
d4pmja_ : (PRO6) (TRP24) [view usage] : c.1.7.0 |TIM beta/alpha-barrel |NAD(P)-linked oxidoreductase |automated matches |automated matches |Rhizobium meliloti [TaxId: 266834]
d2avff2 : (GLY161) (VAL185) [view usage] : b.6.1.0 |Cupredoxin-like |Cupredoxins |automated matches |automated matches |Achromobacter cycloclastes [TaxId: 223]
d4dipi_ : (GLY98) (GLY137) [view usage] : d.26.1.0 |FKBP-like |FKBP-like |automated matches |automated matches |Human (Homo sapiens) [TaxId: 9606]
d1inya_ : (GLN392) (TRP413) [view usage] : b.68.1.1 |6-bladed beta-propeller |Sialidases |Sialidases (neuraminidases) |Influenza neuraminidase |Influenza A virus, different strains [TaxId: 11320]
d2ebfx2 : (PRO1066) (THR1092) [view usage] : c.150.1.2 |EreA/ChaN-like |EreA/ChaN-like |PMT domain-like |Dermonecrotic toxin, ToxA |Pasteurella multocida [TaxId: 747]
d4mija_ : (GLY142) (LYS159) [view usage] : c.94.1.1 |Periplasmic binding protein-like II |Periplasmic binding protein-like II |Phosphate binding protein-like |TRAP dicarboxylate transporter |Polaromonas [TaxId: 296591]
d1m9ha_ : (THR2) (TYR22) [view usage] : c.1.7.1 |TIM beta/alpha-barrel |NAD(P)-linked oxidoreductase |Aldo-keto reductases (NADP) |2,5-diketo-D-gluconic acid reductase A |Corynebacterium sp. [TaxId: 1720]
d2dp9a_ : (GLU85) (LYS100) [view usage] : b.122.1.5 |PUA domain-like |PUA domain-like |Hypothetical protein TTHA0113 |automated matches |Thermus thermophilus HB8 [TaxId: 300852]
d3m0ea_ : (GLY258) (ASN280) [view usage] : c.37.1.20 |P-loop containing nucleoside triphosphate hydrolases |P-loop containing nucleoside triphosphate hydrolases |Extended AAA-ATPase domain |automated matches |Aquifex aeolicus [TaxId: 63363]
d1vsai1 : (LYS67) (ILE86) [view usage] : b.39.1.1 |Ribosomal protein L14 |Ribosomal protein L14 |Ribosomal protein L14 |Ribosomal protein L14 |Thermus thermophilus [TaxId: 274]
d3dwva_ : (LYS97) (ASN111) [view usage] : c.47.1.0 |Thioredoxin fold |Thioredoxin-like |automated matches |automated matches |Trypanosome (Trypanosoma brucei) [TaxId: 5691]
d4nn9a_ : (GLN392) (TRP412) [view usage] : b.68.1.1 |6-bladed beta-propeller |Sialidases |Sialidases (neuraminidases) |Influenza neuraminidase |Influenza A virus, different strains [TaxId: 11320]
d2avfa2 : (GLY161) (PHE183) [view usage] : b.6.1.0 |Cupredoxin-like |Cupredoxins |automated matches |automated matches |Achromobacter cycloclastes [TaxId: 223]
d1lo9a_ : (PHE92) (GLU131) [view usage] : d.38.1.1 |Thioesterase/thiol ester dehydrase-isomerase |Thioesterase/thiol ester dehydrase-isomerase |4HBT-like |4-hydroxybenzoyl-CoA thioesterase |Pseudomonas sp., CBS-3 [TaxId: 306]
d3drwb_ : (LEU169) (SER189) [view usage] : c.72.1.3 |Ribokinase-like |Ribokinase-like |ADP-specific Phosphofructokinase/Glucokinase |automated matches |Pyrococcus horikoshii [TaxId: 53953]
d1bg6a2 : (ALA48) (SER67) [view usage] : c.2.1.6 |NAD(P)-binding Rossmann-fold domains |NAD(P)-binding Rossmann-fold domains |6-phosphogluconate dehydrogenase-like, N-terminal domain |N-(1-D-carboxylethyl)-L-norvaline dehydrogenase |Arthrobacter, strain 1c [TaxId: 1663]
d1wmxa_ : (LEU158) (GLU180) [view usage] : b.18.1.24 |Galactose-binding domain-like |Galactose-binding domain-like |Family 30 carbohydrate binding module, CBM30 (PKD repeat) |Endoglucanase CelJ |Clostridium thermocellum [TaxId: 1515]
d1gs0a2 : (GLY521) (TYR538) [view usage] : d.166.1.2 |ADP-ribosylation |ADP-ribosylation |Poly(ADP-ribose) polymerase, C-terminal domain |Poly(ADP-ribose) polymerase, C-terminal domain |Mouse (Mus musculus) [TaxId: 10090]
d2crfa1 : (GLU23) (PHE39) [view usage] : b.55.1.3 |PH domain-like barrel |PH domain-like |Ran-binding domain |Ran binding protein 3 |Human (Homo sapiens) [TaxId: 9606]
d1k8ma_ : (GLY2) (GLN34) [view usage] : b.84.1.1 |Barrel-sandwich hybrid |Single hybrid motif |Biotinyl/lipoyl-carrier proteins and domains |Lipoyl domain of the mitochondrial branched-chain alpha-ketoacid dehydrogenase |Human (Homo sapiens) [TaxId: 9606]
d1nfaa_ : (TYR13) (HIS28) [view usage] : b.2.5.3 |Common fold of diphtheria toxin/transcription factors/cytochrome f |p53-like transcription factors |Rel/Dorsal transcription factors, DNA-binding domain |T-cell transcription factor NFAT1 (NFATC), DNA-binding domain |Human (Homo sapiens) [TaxId: 9606]
d4napd_ : (VAL142) (VAL158) [view usage] : c.94.1.0 |Periplasmic binding protein-like II |Periplasmic binding protein-like II |automated matches |automated matches |Desulfovibrio alaskensis [TaxId: 207559]
d2hvpa_ : (ILE62) (PRO79) [view usage] : b.50.1.1 |Acid proteases |Acid proteases |Retroviral protease (retropepsin) |Human immunodeficiency virus type 1 protease |Human immunodeficiency virus type 1 [TaxId: 11676]
d1a90a_ : (ALA50) (HIS84) [view usage] : d.17.1.2 |Cystatin-like |Cystatin/monellin |Cystatins |Cystatin |Chicken (Gallus gallus) [TaxId: 9031]
d2avfb2 : (GLY161) (VAL185) [view usage] : b.6.1.0 |Cupredoxin-like |Cupredoxins |automated matches |automated matches |Achromobacter cycloclastes [TaxId: 223]
d1npea_ : (ASP1155) (SER1173) [view usage] : b.68.5.1 |6-bladed beta-propeller |YWTD domain |YWTD domain |Nidogen |Mouse (Mus musculus) [TaxId: 10090]
d4napa_ : (VAL142) (VAL158) [view usage] : c.94.1.0 |Periplasmic binding protein-like II |Periplasmic binding protein-like II |automated matches |automated matches |Desulfovibrio alaskensis [TaxId: 207559]
d4pgna_ : (VAL142) (VAL158) [view usage] : c.94.1.0 |Periplasmic binding protein-like II |Periplasmic binding protein-like II |automated matches |automated matches |Desulfovibrio desulfuricans [TaxId: 207559]
d1rrha2 : (VAL128) (ASN151) [view usage] : b.12.1.1 |Lipase/lipooxygenase domain (PLAT/LH2 domain) |Lipase/lipooxygenase domain (PLAT/LH2 domain) |Lipoxigenase N-terminal domain |Plant lipoxigenase |Soybean (Glycine max), isozyme L3 [TaxId: 3847]
d1bq5a2 : (GLY161) (ASP182) [view usage] : b.6.1.3 |Cupredoxin-like |Cupredoxins |Multidomain cupredoxins |Nitrite reductase, NIR |Alcaligenes xylosoxidans [TaxId: 85698]
d2ihwa_ : (ALA266) (GLU290) [view usage] : c.43.1.0 |CoA-dependent acyltransferases |CoA-dependent acyltransferases |automated matches |automated matches |Cow (Bos taurus) [TaxId: 9913]
d1at0a_ : (ASN353) (ARG377) [view usage] : b.86.1.1 |Hedgehog/intein (Hint) domain |Hedgehog/intein (Hint) domain |Hedgehog C-terminal (Hog) autoprocessing domain |Hedgehog |Fruit fly (Drosophila melanogaster) [TaxId: 7227]
d1vs6k1 : (GLY68) (ASN88) [view usage] : b.39.1.1 |Ribosomal protein L14 |Ribosomal protein L14 |Ribosomal protein L14 |Ribosomal protein L14 |Escherichia coli [TaxId: 562]
d3bzma_ : (LEU242) (PRO263) [view usage] : d.161.1.1 |ADC synthase |ADC synthase |ADC synthase |automated matches |Escherichia coli [TaxId: 562]
d4dz2a_ : (THR2) (GLY20) [view usage] : d.26.1.0 |FKBP-like |FKBP-like |automated matches |automated matches |Burkholderia pseudomallei [TaxId: 320372]
d1q6ha_ : (GLY115) (GLY133) [view usage] : d.26.1.1 |FKBP-like |FKBP-like |FKBP immunophilin/proline isomerase |Peptidyl-prolyl cis-trans isomerase FkpA |Escherichia coli [TaxId: 562]
d3lmta_ : (MET1) (LEU27) [view usage] : c.110.1.0 |DTD-like |DTD-like |automated matches |automated matches |Plasmodium falciparum [TaxId: 36329]
d1u2xa_ : (GLY190) (SER211) [view usage] : c.72.1.3 |Ribokinase-like |Ribokinase-like |ADP-specific Phosphofructokinase/Glucokinase |ADP-specific phosphofructokinase |Pyrococcus horikoshii [TaxId: 53953]
d1uaia_ : (GLY193) (THR222) [view usage] : b.29.1.18 |Concanavalin A-like lectins/glucanases |Concanavalin A-like lectins/glucanases |Alginate lyase |Polyguluronate lyase |Corynebacterium sp. ALY-1 [TaxId: 101519]
d4dz3a_ : (THR2) (GLY20) [view usage] : d.26.1.0 |FKBP-like |FKBP-like |automated matches |automated matches |Burkholderia pseudomallei [TaxId: 320372]
List of distinct SCOP folds where this concept is used (in one or more of its domains):
b.68, c.1, c.94, c.2, c.68, b.29, b.47, c.56, b.50, c.72, c.37, c.47, d.166, b.18, b.2, b.6, b.122, c.43, d.17, d.38,
b.84, b.55, d.109, c.110, b.43, d.26, b.12, b.100, d.161, c.150, b.86, b.39