Tableau information
Concept source: d2dg4a_ amino acid (a.a.) range (GLN20)(ASP37)
nSSEs in this Concept: 3
String of secondary struct.elems. (SSEs) defining this concept: EEE
Each SSE's a.a.range: (start resi) (end resi) SSEtype (H=Helix; E=Strand) followed by a numeric SSE ID:
(GLN20) (HIS25) E1
(HIS25) (LEU30) E2
(GLY33) (ASP37) E3
Orientation angles° of SSE-pairs; those in contact shown in bold font
E1
E2 -72.4° E2
E3 -118.0° 144.7°
Footnote: Inferred from this concept's usages (listed below) was the angular variance of 1σ = ±9.2° about each orientation angle shown above.
Loci of concept usages (shown as a range of a.a. residue ids) in SCOP(v2.05) domains, along with their brief legend taken from SCOP
d2haua1 : (LYS552) (PRO570) [view usage] : c.94.1.2 |Periplasmic binding protein-like II |Periplasmic binding protein-like II |Transferrin |Transferrin |Human (Homo sapiens) [TaxId: 9606]
d3wxme3 : (GLU324) (VAL341) [view usage] : b.44.1.0 |Elongation factor/aminomethyltransferase common domain |EF-Tu/eEF-1alpha/eIF2-gamma C-terminal domain |automated matches |automated matches |Aeropyrum pernix [TaxId: 56636]
d1g7ca2 : (ALA336) (ALA353) [view usage] : b.44.1.1 |Elongation factor/aminomethyltransferase common domain |EF-Tu/eEF-1alpha/eIF2-gamma C-terminal domain |EF-Tu/eEF-1alpha/eIF2-gamma C-terminal domain |Elongation factor eEF-1alpha, C-terminal domain |Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
d1f60a2 : (ALA336) (ALA353) [view usage] : b.44.1.1 |Elongation factor/aminomethyltransferase common domain |EF-Tu/eEF-1alpha/eIF2-gamma C-terminal domain |EF-Tu/eEF-1alpha/eIF2-gamma C-terminal domain |Elongation factor eEF-1alpha, C-terminal domain |Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
d4c0sa3 : (GLY397) (SER414) [view usage] : b.44.1.0 |Elongation factor/aminomethyltransferase common domain |EF-Tu/eEF-1alpha/eIF2-gamma C-terminal domain |automated matches |automated matches |Rabbit (Oryctolagus cuniculus) [TaxId: 9986]
d3wxma3 : (GLU324) (VAL341) [view usage] : b.44.1.0 |Elongation factor/aminomethyltransferase common domain |EF-Tu/eEF-1alpha/eIF2-gamma C-terminal domain |automated matches |automated matches |Aeropyrum pernix [TaxId: 272557]
d3puha1 : (GLY4) (ALA23) [view usage] : c.69.1.21 |alpha/beta-Hydrolases |alpha/beta-Hydrolases |PepX catalytic domain-like |automated matches |Rhodococcus sp. [TaxId: 104109]
d1bmv22 : (THR2124) (LEU2166) [view usage] : b.121.4.2 |Nucleoplasmin-like/VP (viral coat and capsid proteins) |Positive stranded ssRNA viruses |Comoviridae-like VP |Comovirus coat proteins (VP37 and VP23) |BPMV (Bean pod mottle virus) [TaxId: 12260]
d3m4da_ : (LYS273) (ASN293) [view usage] : f.6.1.1 |Leukocidin-like |Leukocidin-like |Leukocidin (pore-forming toxin) |Alpha-hemolysin |Staphylococcus aureus [TaxId: 1280]
d4ncpa_ : (ASN106) (GLY132) [view usage] : d.38.1.0 |Thioesterase/thiol ester dehydrase-isomerase |Thioesterase/thiol ester dehydrase-isomerase |automated matches |automated matches |Staphylococcus aureus [TaxId: 158878]
d1m44a_ : (GLY130) (PRO150) [view usage] : d.108.1.1 |Acyl-CoA N-acyltransferases (Nat) |Acyl-CoA N-acyltransferases (Nat) |N-acetyl transferase, NAT |Aminoglycoside 2'-N-acetyltransferase |Mycobacterium tuberculosis [TaxId: 1773]
d2f3ka_ : (GLY40) (LYS55) [view usage] : b.50.1.1 |Acid proteases |Acid proteases |Retroviral protease (retropepsin) |automated matches |Human immunodeficiency virus 1 [TaxId: 11676]
d1ooca_ : (HIS154) (GLY185) [view usage] : b.80.1.1 |Single-stranded right-handed beta-helix |Pectin lyase-like |Pectate lyase-like |Pectate lyase |Erwinia chrysanthemi, type A [TaxId: 556]
d3ntya_ : (ASP112) (ASP143) [view usage] : c.1.7.1 |TIM beta/alpha-barrel |NAD(P)-linked oxidoreductase |Aldo-keto reductases (NADP) |automated matches |Human (Homo sapiens) [TaxId: 9606]
d2nlra_ : (GLY46) (ASP95) [view usage] : b.29.1.11 |Concanavalin A-like lectins/glucanases |Concanavalin A-like lectins/glucanases |Xylanase/endoglucanase 11/12 |Family 12 endo-1,4-beta-glucanase (cellulase) catalytic domain |Streptomyces lividans, CelB2 [TaxId: 1916]
d4knsa1 : (LYS25) (ARG48) [view usage] : b.6.1.0 |Cupredoxin-like |Cupredoxins |automated matches |automated matches |Nitrosomonas europaea [TaxId: 228410]
d1a94a_ : (GLY40) (LYS55) [view usage] : b.50.1.1 |Acid proteases |Acid proteases |Retroviral protease (retropepsin) |Human immunodeficiency virus type 1 protease |Human immunodeficiency virus type 1 [TaxId: 11676]
d2e7ba_ : (SER34) (PRO50) [view usage] : b.1.1.0 |Immunoglobulin-like beta-sandwich |Immunoglobulin |automated matches |automated matches |Human (Homo sapiens) [TaxId: 9606]
d4niaa_ : (GLN132) (VAL153) [view usage] : b.121.7.1 |Nucleoplasmin-like/VP (viral coat and capsid proteins) |Satellite viruses |Satellite viruses |STNV coat protein |Satellite tobacco necrosis virus [TaxId: 12881]
d1opma1 : (GLU90) (GLY113) [view usage] : b.121.1.2 |Nucleoplasmin-like/VP (viral coat and capsid proteins) |PHM/PNGase F |Peptidylglycine alpha-hydroxylating monooxygenase, PHM |Peptidylglycine alpha-hydroxylating monooxygenase, PHM |Norway rat (Rattus norvegicus) [TaxId: 10116]
d3u94d_ : (LEU6) (GLY28) [view usage] : c.94.1.0 |Periplasmic binding protein-like II |Periplasmic binding protein-like II |automated matches |automated matches |Norway rat (Rattus norvegicus) [TaxId: 10116]
d1bh6a_ : (GLU197) (GLY219) [view usage] : c.41.1.1 |Subtilisin-like |Subtilisin-like |Subtilases |Subtilisin |Bacillus licheniformis [TaxId: 1402]
d1a34a_ : (THR71) (PRO98) [view usage] : b.121.7.1 |Nucleoplasmin-like/VP (viral coat and capsid proteins) |Satellite viruses |Satellite viruses |STNV coat protein |Satellite tobacco necrosis virus [TaxId: 12881]
d2ap9e_ : (TYR125) (GLY154) [view usage] : c.73.1.2 |Carbamate kinase-like |Carbamate kinase-like |N-acetyl-l-glutamate kinase |N-acetyl-l-glutamate kinase |Mycobacterium tuberculosis [TaxId: 1773]
d2ks4a_ : (THR43) (ASP57) [view usage] : b.97.1.1 |Cytolysin/lectin |Cytolysin/lectin |Anemone pore-forming cytolysin |automated matches |Sea anemone (Stichodactyla helianthus) [TaxId: 6123]
d4qgib_ : (GLY40) (LYS55) [view usage] : b.50.1.1 |Acid proteases |Acid proteases |Retroviral protease (retropepsin) |Human immunodeficiency virus type 1 protease |Human immunodeficiency virus type 1 lw12.3 isolate [TaxId: 82834]
d3fh5a1 : (SER151) (SER171) [view usage] : b.98.1.1 |Zn aminopeptidase N-terminal domain |Zn aminopeptidase N-terminal domain |Zn aminopeptidase N-terminal domain |Leukotriene A4 hydrolase N-terminal domain |Human (Homo sapiens) [TaxId: 9606]
d1qrka4 : (GLU453) (ILE477) [view usage] : d.3.1.4 |Cysteine proteinases |Cysteine proteinases |Transglutaminase core |Transglutaminase catalytic domain |Human (Homo sapiens), blood isozyme [TaxId: 9606]
d2j98a_ : (LYS8) (GLU25) [view usage] : b.140.1.0 |Replicase NSP9 |Replicase NSP9 |automated matches |automated matches |Human coronavirus 229E [TaxId: 11137]
d2arza1 : (ASP123) (ALA145) [view usage] : b.45.1.1 |Split barrel-like |FMN-binding split barrel |PNP-oxidase like |Hypothetical protein PA4388 |Pseudomonas aeruginosa [TaxId: 287]
d2q11a_ : (THR59) (GLU79) [view usage] : b.50.1.2 |Acid proteases |Acid proteases |Pepsin-like |beta-secretase (memapsin) |Human (Homo sapiens) [TaxId: 9606]
d1exma1 : (GLU261) (GLN278) [view usage] : b.43.3.1 |Reductase/isomerase/elongation factor common domain |Translation proteins |Elongation factors |Elongation factor Tu (EF-Tu), domain 2 |Thermus thermophilus [TaxId: 274]
d1y0ga_ : (ALA23) (ASP54) [view usage] : b.61.6.1 |Streptavidin-like |YceI-like |YceI-like |Lipid binding protein YceI |Escherichia coli [TaxId: 562]
d1gwya_ : (GLY41) (VAL57) [view usage] : b.97.1.1 |Cytolysin/lectin |Cytolysin/lectin |Anemone pore-forming cytolysin |Sticholysin II |Carribean sea anemone (Stoichactis helianthus) [TaxId: 6123]
d3spsc_ : (GLY102) (THR133) [view usage] : d.38.1.1 |Thioesterase/thiol ester dehydrase-isomerase |Thioesterase/thiol ester dehydrase-isomerase |4HBT-like |Acyl-CoA hydrolase BH0798 |Bacillus halodurans [TaxId: 86665]
d1dbga_ : (GLY52) (LYS74) [view usage] : b.80.1.4 |Single-stranded right-handed beta-helix |Pectin lyase-like |Chondroitinase B |Chondroitinase B |Pedobacter heparinus [TaxId: 984]
d1naqa_ : (ALA38) (TYR60) [view usage] : d.58.5.2 |Ferredoxin-like |GlnB-like |Divalent ion tolerance proteins CutA (CutA1) |Cut A1 |Escherichia coli [TaxId: 562]
d3wxmc3 : (GLU324) (VAL341) [view usage] : b.44.1.0 |Elongation factor/aminomethyltransferase common domain |EF-Tu/eEF-1alpha/eIF2-gamma C-terminal domain |automated matches |automated matches |Aeropyrum pernix [TaxId: 56636]
d3puhb1 : (GLY4) (ALA23) [view usage] : c.69.1.21 |alpha/beta-Hydrolases |alpha/beta-Hydrolases |PepX catalytic domain-like |automated matches |Rhodococcus sp. [TaxId: 104109]
d3u92a_ : (LEU6) (GLY28) [view usage] : c.94.1.0 |Periplasmic binding protein-like II |Periplasmic binding protein-like II |automated matches |automated matches |Norway rat (Rattus norvegicus) [TaxId: 10116]
d3ta1d_ : (ARG90) (ALA110) [view usage] : d.58.5.0 |Ferredoxin-like |GlnB-like |automated matches |automated matches |Archaeoglobus fulgidus [TaxId: 224325]
d4mafh1 : (ASN201) (ASP218) [view usage] : b.122.1.0 |PUA domain-like |PUA domain-like |automated matches |automated matches |Soybean (Glycine max) [TaxId: 3847]
d1cjdb2 : (LEU281) (GLN308) [view usage] : b.121.2.1 |Nucleoplasmin-like/VP (viral coat and capsid proteins) |Group II dsDNA viruses VP |Coat protein p3 |Coat protein p3 |Bacteriophage PRD1 [TaxId: 10658]
List of distinct SCOP folds where this concept is used (in one or more of its domains):
b.80, c.1, c.69, c.94, d.58, b.29, b.50, b.121, d.3, b.6, b.122, b.1, b.45, d.108, c.73, c.41, d.38, b.61, b.97, b.43,
d.26, b.98, b.44, f.6, b.140