Tableau information
Concept source: d1yu0a1 amino acid (a.a.) range (ALA66)(GLU84)
nSSEs in this Concept: 3
String of secondary struct.elems. (SSEs) defining this concept: EEE
Each SSE's a.a.range: (start resi) (end resi) SSEtype (H=Helix; E=Strand) followed by a numeric SSE ID:
(ALA66) (GLY71) E1
(ALA73) (ILE77) E2
(GLY80) (GLU84) E3
Orientation angles° of SSE-pairs; those in contact shown in bold font
E1
E2 153.6° E2
E3 -116.3° -82.3°
Footnote: Inferred from this concept's usages (listed below) was the angular variance of 1σ = ±5.6° about each orientation angle shown above.
Loci of concept usages (shown as a range of a.a. residue ids) in SCOP(v2.05) domains, along with their brief legend taken from SCOP
d2e2dc_ : (GLY1088) (PRO1106) [view usage] : b.40.3.1 |OB-fold |TIMP-like |Tissue inhibitor of metalloproteinases, TIMP |TIMP-2 |Cow (Bos taurus) [TaxId: 9913]
d1buca2 : (PHE197) (PRO224) [view usage] : e.6.1.1 |Acyl-CoA dehydrogenase NM domain-like |Acyl-CoA dehydrogenase NM domain-like |Medium chain acyl-CoA dehydrogenase, NM (N-terminal and middle) domains |Butyryl-CoA dehydrogenase, NM domains |Megasphaera elsdenii [TaxId: 907]
d2jena_ : (GLY130) (ASN164) [view usage] : b.29.1.0 |Concanavalin A-like lectins/glucanases |Concanavalin A-like lectins/glucanases |automated matches |automated matches |Bacillus licheniformis [TaxId: 1402]
d1eo2a_ : (LEU170) (ASP199) [view usage] : b.3.6.1 |Prealbumin-like |Aromatic compound dioxygenase |Aromatic compound dioxygenase |Protocatechuate-3,4-dioxygenase, alpha chain |Acinetobacter calcoaceticus, adp1 [TaxId: 471]
d4asia1 : (HIS1805) (GLU1826) [view usage] : c.14.1.0 |ClpP/crotonase |ClpP/crotonase |automated matches |automated matches |Human (Homo sapiens) [TaxId: 9606]
d2g3pa1 : (VAL43) (PRO59) [view usage] : b.37.1.1 |N-terminal domains of the minor coat protein g3p |N-terminal domains of the minor coat protein g3p |N-terminal domains of the minor coat protein g3p |N-terminal domains of the minor coat protein g3p |Bacteriophage fd [TaxId: 10864]
d3wg3a_ : (THR2) (THR25) [view usage] : b.29.1.0 |Concanavalin A-like lectins/glucanases |Concanavalin A-like lectins/glucanases |automated matches |automated matches |Agrocybe cylindracea [TaxId: 64608]
d3zpya_ : (VAL256) (ASP281) [view usage] : b.29.1.0 |Concanavalin A-like lectins/glucanases |Concanavalin A-like lectins/glucanases |automated matches |automated matches |Zobellia galactanivorans [TaxId: 63186]
d2dvla1 : (GLY185) (PRO213) [view usage] : e.6.1.0 |Acyl-CoA dehydrogenase NM domain-like |Acyl-CoA dehydrogenase NM domain-like |automated matches |automated matches |Thermus thermophilus [TaxId: 300852]
d2oxha_ : (ALA4) (GLY33) [view usage] : b.1.18.0 |Immunoglobulin-like beta-sandwich |E set domains |automated matches |automated matches |Paracoccus denitrificans [TaxId: 266]
d1c0aa1 : (GLY73) (ASN103) [view usage] : b.40.4.1 |OB-fold |Nucleic acid-binding proteins |Anticodon-binding domain |Aspartyl-tRNA synthetase (AspRS) |Escherichia coli [TaxId: 562]
d1a8da1 : (SER116) (GLY134) [view usage] : b.29.1.6 |Concanavalin A-like lectins/glucanases |Concanavalin A-like lectins/glucanases |Clostridium neurotoxins, the second last domain |Tetanus neurotoxin |Clostridium tetani [TaxId: 1513]
d1oa4a_ : (ALA28) (ASN51) [view usage] : b.29.1.11 |Concanavalin A-like lectins/glucanases |Concanavalin A-like lectins/glucanases |Xylanase/endoglucanase 11/12 |Family 12 endo-1,4-beta-glucanase (cellulase) catalytic domain |Streptomyces sp. 11ag8 [TaxId: 133452]
d1qd0a_ : (GLN1) (SER30) [view usage] : b.1.1.1 |Immunoglobulin-like beta-sandwich |Immunoglobulin |V set domains (antibody variable domain-like) |Camelid IG heavy chain variable domain, VHh |Llama (Lama glama) [TaxId: 9844]
d4asie1 : (HIS1805) (GLU1826) [view usage] : c.14.1.0 |ClpP/crotonase |ClpP/crotonase |automated matches |automated matches |Human (Homo sapiens) [TaxId: 9606]
d2buxa1 : (LEU170) (ASP199) [view usage] : b.3.6.1 |Prealbumin-like |Aromatic compound dioxygenase |Aromatic compound dioxygenase |Protocatechuate-3,4-dioxygenase, alpha chain |Acinetobacter calcoaceticus, adp1 [TaxId: 471]
d1ks4a_ : (TYR98) (GLY125) [view usage] : b.29.1.11 |Concanavalin A-like lectins/glucanases |Concanavalin A-like lectins/glucanases |Xylanase/endoglucanase 11/12 |Family 12 endo-1,4-beta-glucanase (cellulase) catalytic domain |Aspergillus niger [TaxId: 5061]
d2nlra_ : (VAL98) (GLY129) [view usage] : b.29.1.11 |Concanavalin A-like lectins/glucanases |Concanavalin A-like lectins/glucanases |Xylanase/endoglucanase 11/12 |Family 12 endo-1,4-beta-glucanase (cellulase) catalytic domain |Streptomyces lividans, CelB2 [TaxId: 1916]
d1x54a1 : (GLY76) (VAL97) [view usage] : b.40.4.0 |OB-fold |Nucleic acid-binding proteins |automated matches |automated matches |Pyrococcus horikoshii [TaxId: 53953]
d2z8la1 : (GLU80) (LYS97) [view usage] : b.40.2.2 |OB-fold |Bacterial enterotoxins |Superantigen toxins, N-terminal domain |Superantigen-like protein SET3 |Staphylococcus aureus [TaxId: 1280]
d2kwba_ : (GLN152) (LYS180) [view usage] : b.88.1.0 |Mss4-like |Mss4-like |automated matches |automated matches |Nematode (Caenorhabditis elegans) [TaxId: 6239]
d1rx0c2 : (GLY204) (PRO232) [view usage] : e.6.1.1 |Acyl-CoA dehydrogenase NM domain-like |Acyl-CoA dehydrogenase NM domain-like |Medium chain acyl-CoA dehydrogenase, NM (N-terminal and middle) domains |Isobutyryl-CoA dehydrogenase |Human (Homo sapiens) [TaxId: 9606]
d2pg0a1 : (GLY198) (PRO226) [view usage] : e.6.1.0 |Acyl-CoA dehydrogenase NM domain-like |Acyl-CoA dehydrogenase NM domain-like |automated matches |automated matches |Geobacillus kaustophilus [TaxId: 235909]
d4m9ab1 : (PHE193) (PRO220) [view usage] : e.6.1.0 |Acyl-CoA dehydrogenase NM domain-like |Acyl-CoA dehydrogenase NM domain-like |automated matches |automated matches |Burkholderia thailandensis [TaxId: 271848]
d1opma1 : (LEU138) (GLY159) [view usage] : b.121.1.2 |Nucleoplasmin-like/VP (viral coat and capsid proteins) |PHM/PNGase F |Peptidylglycine alpha-hydroxylating monooxygenase, PHM |Peptidylglycine alpha-hydroxylating monooxygenase, PHM |Norway rat (Rattus norvegicus) [TaxId: 10116]
d3afkb_ : (GLY2) (THR22) [view usage] : b.29.1.0 |Concanavalin A-like lectins/glucanases |Concanavalin A-like lectins/glucanases |automated matches |automated matches |Agrocybe aegerita [TaxId: 5400]
d2x9bb_ : (ILE41) (PRO57) [view usage] : b.37.1.0 |N-terminal domains of the minor coat protein g3p |N-terminal domains of the minor coat protein g3p |automated matches |automated matches |Enterobacteria phage [TaxId: 10868]
d2dmga_ : (LEU10) (PHE39) [view usage] : b.7.1.0 |C2 domain-like |C2 domain (Calcium/lipid-binding domain, CaLB) |automated matches |automated matches |Human (Homo sapiens) [TaxId: 9606]
d3a6qa_ : (SER88) (LEU122) [view usage] : b.45.1.1 |Split barrel-like |FMN-binding split barrel |PNP-oxidase like |FMN-binding protein |Desulfovibrio vulgaris, strain Miyazaki F [TaxId: 881]
d1bn8a_ : (ASN185) (ASP203) [view usage] : b.80.1.1 |Single-stranded right-handed beta-helix |Pectin lyase-like |Pectate lyase-like |Pectate lyase |Bacillus subtilis [TaxId: 1423]
d2oxga_ : (ALA4) (GLY33) [view usage] : b.1.18.0 |Immunoglobulin-like beta-sandwich |E set domains |automated matches |automated matches |Paracoccus denitrificans [TaxId: 266]
d3m3ed_ : (GLY2) (THR22) [view usage] : b.29.1.0 |Concanavalin A-like lectins/glucanases |Concanavalin A-like lectins/glucanases |automated matches |automated matches |Agrocybe aegerita [TaxId: 5400]
d4ogya_ : (THR461) (THR496) [view usage] : b.47.1.2 |Trypsin-like serine proteases |Trypsin-like serine proteases |Eukaryotic proteases |automated matches |Human (Homo sapiens) [TaxId: 9606]
d2x9ba_ : (ILE41) (PRO57) [view usage] : b.37.1.0 |N-terminal domains of the minor coat protein g3p |N-terminal domains of the minor coat protein g3p |automated matches |automated matches |Enterobacteria phage [TaxId: 10868]
d1gjia1 : (GLN261) (PRO280) [view usage] : b.1.18.1 |Immunoglobulin-like beta-sandwich |E set domains |NF-kappa-B/REL/DORSAL transcription factors, C-terminal domain |p65 subunit of NF-kappa B (NFKB), dimerization domain |Chicken (Gallus gallus), C-rel [TaxId: 9031]
d3mkha1 : (SER223) (PRO251) [view usage] : e.6.1.0 |Acyl-CoA dehydrogenase NM domain-like |Acyl-CoA dehydrogenase NM domain-like |automated matches |automated matches |Podospora anserina [TaxId: 5145]
d1n1sa1 : (GLY506) (LYS524) [view usage] : b.29.1.15 |Concanavalin A-like lectins/glucanases |Concanavalin A-like lectins/glucanases |Trypanosoma sialidase, C-terminal domain |Trypanosoma sialidase, C-terminal domain |Trypanosoma rangeli [TaxId: 5698]
d2jifa1 : (GLY243) (PRO271) [view usage] : e.6.1.0 |Acyl-CoA dehydrogenase NM domain-like |Acyl-CoA dehydrogenase NM domain-like |automated matches |automated matches |Human (Homo sapiens) [TaxId: 9606]
d2ox7c_ : (ASP37) (THR57) [view usage] : b.172.1.1 |YopX-like |YopX-like |YopX-like |Hypothetical protein EF1440 |Enterococcus faecalis [TaxId: 1351]
d3kcqc_ : (LYS187) (GLU209) [view usage] : c.65.1.0 |Formyltransferase |Formyltransferase |automated matches |automated matches |Anaplasma phagocytophilum [TaxId: 212042]
d3pvjb_ : (LEU3) (SER22) [view usage] : b.82.2.5 |Double-stranded beta-helix |Clavaminate synthase-like |TauD/TfdA-like |automated matches |Pseudomonas putida [TaxId: 160488]
d1ykka_ : (ASP65) (PHE92) [view usage] : b.3.6.1 |Prealbumin-like |Aromatic compound dioxygenase |Aromatic compound dioxygenase |Protocatechuate-3,4-dioxygenase, alpha chain |Pseudomonas putida [TaxId: 303]
d1ykka_ : (LEU170) (PHE200) [view usage] : b.3.6.1 |Prealbumin-like |Aromatic compound dioxygenase |Aromatic compound dioxygenase |Protocatechuate-3,4-dioxygenase, alpha chain |Pseudomonas putida [TaxId: 303]
d2bspa_ : (ASN185) (ASP203) [view usage] : b.80.1.1 |Single-stranded right-handed beta-helix |Pectin lyase-like |Pectate lyase-like |Pectate lyase |Bacillus subtilis [TaxId: 1423]
d4hr3a1 : (GLY215) (PRO245) [view usage] : e.6.1.0 |Acyl-CoA dehydrogenase NM domain-like |Acyl-CoA dehydrogenase NM domain-like |automated matches |automated matches |Mycobacterium abscessus [TaxId: 561007]
d1eo9a_ : (LEU170) (ASP199) [view usage] : b.3.6.1 |Prealbumin-like |Aromatic compound dioxygenase |Aromatic compound dioxygenase |Protocatechuate-3,4-dioxygenase, alpha chain |Acinetobacter calcoaceticus, adp1 [TaxId: 471]
List of distinct SCOP folds where this concept is used (in one or more of its domains):
b.80, b.82, b.29, b.47, c.14, b.40, e.6, b.121, b.1, b.45, c.65, b.7, b.3, b.88, b.37, b.172, b.163