Tableau information
Concept source: d4inka_ amino acid (a.a.) range (GLN129)(ASP148)
nSSEs in this Concept: 3
String of secondary struct.elems. (SSEs) defining this concept: EEE
Each SSE's a.a.range: (start resi) (end resi) SSEtype (H=Helix; E=Strand) followed by a numeric SSE ID:
(GLN129) (GLY135) E1
(LEU138) (GLY142) E2
(ASN143) (ASP148) E3
Orientation angles° of SSE-pairs; those in contact shown in bold font
E1
E2 -93.9° E2
E3 91.1° 166.8°
Footnote: Inferred from this concept's usages (listed below) was the angular variance of 1σ = ±8.6° about each orientation angle shown above.
Loci of concept usages (shown as a range of a.a. residue ids) in SCOP(v2.05) domains, along with their brief legend taken from SCOP
d2xzm1_ : (THR7) (ARG28) [view usage] : i.1.1.3 |Ribosome and ribosomal fragments |Ribosome and ribosomal fragments |Small subunit |Eukaryotic, cytoplasmic (40S subunit) |Tetrahymena thermophila [TaxId: 5911]
d4a4ib_ : (VAL27) (ILE49) [view usage] : b.40.4.0 |OB-fold |Nucleic acid-binding proteins |automated matches |automated matches |Human (Homo sapiens) [TaxId: 9606]
d1q46a2 : (GLY65) (ARG87) [view usage] : b.40.4.5 |OB-fold |Nucleic acid-binding proteins |Cold shock DNA-binding domain-like |Eukaryotic initiation factor 2alpha, eIF2alpha, N-terminal domain |Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
d1udya2 : (LEU129) (TRP166) [view usage] : e.6.1.1 |Acyl-CoA dehydrogenase NM domain-like |Acyl-CoA dehydrogenase NM domain-like |Medium chain acyl-CoA dehydrogenase, NM (N-terminal and middle) domains |Medium chain acyl-CoA dehydrogenase, NM domains |Pig (Sus scrofa) [TaxId: 9823]
d1g8la1 : (PRO328) (ARG350) [view usage] : b.85.6.1 |beta-clip |MoeA C-terminal domain-like |MoeA C-terminal domain-like |Molybdenum cofactor biosynthesis protein MoeA, C-terminal domain |Escherichia coli [TaxId: 562]
d2z6bd1 : (ARG27) (PHE54) [view usage] : b.106.1.1 |Phage tail proteins |Phage tail proteins |Baseplate protein-like |Baseplate structural protein gp27 |Bacteriophage T4 [TaxId: 10665]
d4gvja_ : (PRO889) (THR919) [view usage] : d.144.1.0 |Protein kinase-like (PK-like) |Protein kinase-like (PK-like) |automated matches |automated matches |Human (Homo sapiens) [TaxId: 9606]
d1wcmg_ : (SER141) (LYS164) [view usage] : i.8.1.1 |RNA polymerase |RNA polymerase |RNA polymerase |Complete 12-subunit RNA polymerase II complex |Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
d1jh5a_ : (ASP4) (LEU28) [view usage] : b.22.1.1 |TNF-like |TNF-like |TNF-like |Soluble part of TALL-1, sTALL-1 (BAFF) |Human (Homo sapiens) [TaxId: 9606]
d1ig3a1 : (ASN226) (ALA260) [view usage] : b.82.6.1 |Double-stranded beta-helix |Thiamin pyrophosphokinase, substrate-binding domain |Thiamin pyrophosphokinase, substrate-binding domain |Thiamin pyrophosphokinase, substrate-binding domain |Mouse (Mus musculus) [TaxId: 10090]
d2ch9a_ : (LYS119) (HIS147) [view usage] : d.17.1.0 |Cystatin-like |Cystatin/monellin |automated matches |automated matches |Human (Homo sapiens) [TaxId: 9606]
d1y4wa2 : (ASN37) (GLN57) [view usage] : b.67.2.3 |5-bladed beta-propeller |Arabinanase/levansucrase/invertase |Glycosyl hydrolases family 32 N-terminal domain |Exo-inulinase |Aspergillus awamori [TaxId: 105351]
d1gaxa5 : (ARG767) (PRO791) [view usage] : a.27.1.1 |Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases |Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases |Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases |Valyl-tRNA synthetase (ValRS) |Thermus thermophilus [TaxId: 274]
d3shda_ : (SER59) (GLU89) [view usage] : d.113.1.0 |Nudix |Nudix |automated matches |automated matches |Escherichia coli [TaxId: 405955]
d1q8ka4 : (GLY65) (LYS86) [view usage] : b.40.4.5 |OB-fold |Nucleic acid-binding proteins |Cold shock DNA-binding domain-like |Eukaryotic initiation factor 2alpha, eIF2alpha, N-terminal domain |Human (Homo sapiens) [TaxId: 9606]
d2e1ba1 : (LYS16) (LEU32) [view usage] : b.43.3.6 |Reductase/isomerase/elongation factor common domain |Translation proteins |AlaX-M N-terminal domain-like |AlaX-M trans-editing enzyme, N-terminal domain |Pyrococcus horikoshii [TaxId: 53953]
d2ohdf_ : (MET66) (ALA94) [view usage] : d.58.21.0 |Ferredoxin-like |Molybdenum cofactor biosynthesis protein C, MoaC |automated matches |automated matches |Sulfolobus tokodaii [TaxId: 273063]
d2rfra1 : (GLY79) (CYS100) [view usage] : d.17.4.28 |Cystatin-like |NTF2-like |BaiE/LinA-like |Uncharacterized protein Saro3722 |Novosphingobium aromaticivorans [TaxId: 48935]
d2hd3d_ : (MSE1) (PRO32) [view usage] : b.40.15.1 |OB-fold |EutN/CcmL-like |EutN/CcmL-like |Ethanolamine utilization protein EutN |Escherichia coli [TaxId: 562]
d1nu5a2 : (ALA5) (HIS27) [view usage] : d.54.1.1 |Enolase N-terminal domain-like |Enolase N-terminal domain-like |Enolase N-terminal domain-like |Chlormuconate cycloisomerase |Pseudomonas sp. p51 [TaxId: 65067]
d3j38e_ : (LYS120) (HIS142) [view usage] : i.1.1.1 |Ribosome and ribosomal fragments |Ribosome and ribosomal fragments |Ribosome complexes |Eukaryotic, cytoplasmic (80S ribosome functional complex) |Drosophila melanogaster [TaxId: 7227]
d3fpqa_ : (ARG31) (LYS49) [view usage] : d.144.1.7 |Protein kinase-like (PK-like) |Protein kinase-like (PK-like) |Protein kinases, catalytic subunit |Protein kinase wnk1 |Human (Homo sapiens) [TaxId: 9606]
d3j3ac_ : (PRO8) (ARG31) [view usage] : i.1.1.1 |Ribosome and ribosomal fragments |Ribosome and ribosomal fragments |Ribosome complexes |Eukaryotic, cytoplasmic (80S ribosome functional complex) |Homo sapiens [TaxId: 9606]
d1krha1 : (HIS107) (LEU130) [view usage] : b.43.4.2 |Reductase/isomerase/elongation factor common domain |Riboflavin synthase domain-like |Ferredoxin reductase FAD-binding domain-like |Benzoate dioxygenase reductase |Acinetobacter sp. [TaxId: 472]
d4h83f1 : (GLY19) (THR46) [view usage] : d.54.1.0 |Enolase N-terminal domain-like |Enolase N-terminal domain-like |automated matches |automated matches |Marine actinobacterium [TaxId: 312284]
d3rita1 : (MET1) (GLU27) [view usage] : d.54.1.0 |Enolase N-terminal domain-like |Enolase N-terminal domain-like |automated matches |automated matches |Methylococcus capsulatus [TaxId: 414]
d2wq8a1 : (ILE5) (MET59) [view usage] : b.18.1.0 |Galactose-binding domain-like |Galactose-binding domain-like |automated matches |automated matches |Fusarium graminearum (Gibberella zeae) [TaxId: 5518]
d2oojb_ : (THR4) (MSE32) [view usage] : b.159.2.1 |AOC barrel-like |SO1590-like |SO1590-like |Hypothetical protein SO1590 |Shewanella oneidensis [TaxId: 70863]
d4aqha_ : (ALA335) (GLN375) [view usage] : e.1.1.1 |Serpins |Serpins |Serpins |automated matches |Human (Homo sapiens) [TaxId: 9606]
d3deqa1 : (ASN6) (SER28) [view usage] : d.54.1.0 |Enolase N-terminal domain-like |Enolase N-terminal domain-like |automated matches |automated matches |Thermotoga maritima [TaxId: 243274]
d1et6a1 : (ILE66) (THR87) [view usage] : b.40.2.2 |OB-fold |Bacterial enterotoxins |Superantigen toxins, N-terminal domain |Streptococcal superantigen Smez-2 |Streptococcus pyogenes [TaxId: 1314]
d2d62a3 : (ASN311) (GLY334) [view usage] : b.40.6.0 |OB-fold |MOP-like |automated matches |automated matches |Pyrococcus horikoshii [TaxId: 53953]
d4m4sa2 : (LYS212) (GLY240) [view usage] : b.43.3.1 |Reductase/isomerase/elongation factor common domain |Translation proteins |Elongation factors |Initiation factor eIF2 gamma subunit, domain II |Sulfolobus solfataricus [TaxId: 2287]
d1sqra_ : (MET1) (LYS25) [view usage] : b.43.3.3 |Reductase/isomerase/elongation factor common domain |Translation proteins |Ribosomal protein L35ae |Ribosomal protein L35ae |Pyrococcus furiosus [TaxId: 2261]
d3mb7a_ : (ASP38) (GLU55) [view usage] : d.144.1.7 |Protein kinase-like (PK-like) |Protein kinase-like (PK-like) |Protein kinases, catalytic subunit |Protein kinase CK2, alpha subunit |Human (Homo sapiens) [TaxId: 9606]
d3i4ka1 : (LYS10) (THR32) [view usage] : d.54.1.0 |Enolase N-terminal domain-like |Enolase N-terminal domain-like |automated matches |automated matches |Corynebacterium glutamicum [TaxId: 1718]
d3gvka1 : (ARG425) (VAL446) [view usage] : b.68.1.2 |6-bladed beta-propeller |Sialidases |Endo-alpha-sialidase |automated matches |Enterobacteria phage [TaxId: 344021]
d1s9aa_ : (GLY82) (SER128) [view usage] : b.3.6.1 |Prealbumin-like |Aromatic compound dioxygenase |Aromatic compound dioxygenase |Chlorocatechol 1,2-dioxygenase |Rhodococcus opacus [TaxId: 37919]
d4aqhb_ : (VAL334) (MET377) [view usage] : e.1.1.1 |Serpins |Serpins |Serpins |automated matches |Human (Homo sapiens) [TaxId: 9606]
d1z8ka1 : (LYS20) (PHE56) [view usage] : b.159.1.1 |AOC barrel-like |Allene oxide cyclase-like |Allene oxide cyclase-like |Allene oxide cyclase, AOC |Thale cress (Arabidopsis thaliana), chloroplast AOC2 [TaxId: 3702]
d1n0ua3 : (VAL561) (PRO592) [view usage] : d.14.1.1 |Ribosomal protein S5 domain 2-like |Ribosomal protein S5 domain 2-like |Translational machinery components |Elongation factor 2 (eEF-2), domain IV |Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
d3ltqa_ : (VAL40) (ILE56) [view usage] : b.42.1.2 |beta-Trefoil |Cytokine |Interleukin-1 (IL-1) |Interleukin-1beta |Human (Homo sapiens) [TaxId: 9606]
d2zada1 : (ASN6) (SER28) [view usage] : d.54.1.0 |Enolase N-terminal domain-like |Enolase N-terminal domain-like |automated matches |automated matches |Thermotoga maritima [TaxId: 243274]
d2ja9a1 : (ASP117) (CYS136) [view usage] : b.40.4.5 |OB-fold |Nucleic acid-binding proteins |Cold shock DNA-binding domain-like |S1-domain of exosome component 3 (RRP40) |Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
d1u8va2 : (LEU143) (HIS188) [view usage] : e.6.1.1 |Acyl-CoA dehydrogenase NM domain-like |Acyl-CoA dehydrogenase NM domain-like |Medium chain acyl-CoA dehydrogenase, NM (N-terminal and middle) domains |4-hydroxybutyryl-CoA dehydratase AbfD, NM domains |Clostridium aminobutyricum [TaxId: 33953]
d4ic7d_ : (GLN177) (PHE201) [view usage] : d.144.1.0 |Protein kinase-like (PK-like) |Protein kinase-like (PK-like) |automated matches |automated matches |Human (Homo sapiens) [TaxId: 9606]
d3cu7af : (TYR1617) (ASP1640) [view usage] : b.40.3.3 |OB-fold |TIMP-like |Netrin-like domain (NTR/C345C module) |Complement C5 domain |Human (Homo sapiens) [TaxId: 9606]
d1c5ga_ : (ALA358) (GLN398) [view usage] : e.1.1.1 |Serpins |Serpins |Serpins |Plasminogen activator inhibitor-1 |Human (Homo sapiens) [TaxId: 9606]
d1dgsa2 : (ALA315) (GLU342) [view usage] : b.40.4.6 |OB-fold |Nucleic acid-binding proteins |DNA ligase/mRNA capping enzyme postcatalytic domain |NAD+-dependent DNA ligase |Thermus filiformis [TaxId: 276]
d1vhka1 : (GLY48) (LEU66) [view usage] : b.122.1.2 |PUA domain-like |PUA domain-like |YggJ N-terminal domain-like |Hypothetical protein YqeU |Bacillus subtilis [TaxId: 1423]
d2a1tc2 : (LEU129) (TRP166) [view usage] : e.6.1.1 |Acyl-CoA dehydrogenase NM domain-like |Acyl-CoA dehydrogenase NM domain-like |Medium chain acyl-CoA dehydrogenase, NM (N-terminal and middle) domains |automated matches |Human (Homo sapiens) [TaxId: 9606]
d3fgya_ : (GLU65) (GLY89) [view usage] : d.17.4.0 |Cystatin-like |NTF2-like |automated matches |automated matches |Burkholderia xenovorans [TaxId: 266265]
d4ic7a_ : (GLN177) (GLY202) [view usage] : d.144.1.0 |Protein kinase-like (PK-like) |Protein kinase-like (PK-like) |automated matches |automated matches |Human (Homo sapiens) [TaxId: 9606]
d3lpwb1 : (THR5) (TRP26) [view usage] : b.1.2.0 |Immunoglobulin-like beta-sandwich |Fibronectin type III |automated matches |automated matches |Human (Homo sapiens) [TaxId: 9606]
d2hgje1 : (ASP18) (GLY50) [view usage] : b.43.3.2 |Reductase/isomerase/elongation factor common domain |Translation proteins |Ribosomal protein L3 |Ribosomal protein L3 |Thermus thermophilus [TaxId: 274]
d1gyhd_ : (LEU153) (GLY174) [view usage] : b.67.2.1 |5-bladed beta-propeller |Arabinanase/levansucrase/invertase |alpha-L-arabinanase-like |alpha-L-arabinanase |Cellvibrio cellulosa [TaxId: 155077]
List of distinct SCOP folds where this concept is used (in one or more of its domains):
b.68, b.82, d.58, i.1, b.67, b.47, d.144, b.40, e.6, b.18, d.14, b.85, b.122, b.1, b.42, d.17, e.1, b.22, b.43, b.3,
i.8, d.54, d.113, a.27, b.106, b.159