Tableau information
Concept source: d1w8xe_ amino acid (a.a.) range (SER255)(PHE291)
nSSEs in this Concept: 3
String of secondary struct.elems. (SSEs) defining this concept: EEE
Each SSE's a.a.range: (start resi) (end resi) SSEtype (H=Helix; E=Strand) followed by a numeric SSE ID:
(SER255) (GLY267) E1
(ASN271) (GLN277) E2
(LEU285) (PHE291) E3
Orientation angles° of SSE-pairs; those in contact shown in bold font
E1
E2 149.5° E2
E3 -21.8° 140.7°
Footnote: Inferred from this concept's usages (listed below) was the angular variance of 1σ = ±13.0° about each orientation angle shown above.
Loci of concept usages (shown as a range of a.a. residue ids) in SCOP(v2.05) domains, along with their brief legend taken from SCOP
d2h62c_ : (CYS38) (GLU65) [view usage] : g.7.1.3 |Snake toxin-like |Snake toxin-like |Extracellular domain of cell surface receptors |automated matches |Human (Homo sapiens) [TaxId: 9606]
d2au7a_ : (PRO27) (CYS53) [view usage] : b.40.5.1 |OB-fold |Inorganic pyrophosphatase |Inorganic pyrophosphatase |Inorganic pyrophosphatase |Escherichia coli [TaxId: 562]
d3j3bd_ : (ARG85) (GLU124) [view usage] : i.1.1.1 |Ribosome and ribosomal fragments |Ribosome and ribosomal fragments |Ribosome complexes |Eukaryotic, cytoplasmic (80S ribosome functional complex) |Homo sapiens [TaxId: 9606]
d3m5ua_ : (TYR140) (ASP167) [view usage] : c.67.1.0 |PLP-dependent transferase-like |PLP-dependent transferases |automated matches |automated matches |Campylobacter jejuni [TaxId: 197]
d1f56a_ : (ALA1) (TYR29) [view usage] : b.6.1.1 |Cupredoxin-like |Cupredoxins |Plastocyanin/azurin-like |Plantacyanin |Spinach (Spinacia oleracea) [TaxId: 3562]
d1ig3a1 : (ASP179) (PRO207) [view usage] : b.82.6.1 |Double-stranded beta-helix |Thiamin pyrophosphokinase, substrate-binding domain |Thiamin pyrophosphokinase, substrate-binding domain |Thiamin pyrophosphokinase, substrate-binding domain |Mouse (Mus musculus) [TaxId: 10090]
d1c76a_ : (TYR24) (LYS57) [view usage] : d.15.5.1 |beta-Grasp (ubiquitin-like) |Staphylokinase/streptokinase |Staphylokinase/streptokinase |Staphylokinase |Staphylococcus aureus [TaxId: 1280]
d1i5pa2 : (SER337) (THR364) [view usage] : b.77.2.1 |beta-Prism I |delta-Endotoxin (insectocide), middle domain |delta-Endotoxin (insectocide), middle domain |delta-Endotoxin (insectocide), middle domain |Bacillus thuringiensis subsp. kurstaki, CRY2AA [TaxId: 29339]
d1ohca1 : (ASP47) (SER69) [view usage] : c.45.1.1 |(Phosphotyrosine protein) phosphatases II |(Phosphotyrosine protein) phosphatases II |Dual specificity phosphatase-like |Proline directed phosphatase CDC14b2 |Human (Homo sapiens) [TaxId: 9606]
d2f3da_ : (CYS92) (PHE117) [view usage] : e.7.1.1 |Carbohydrate phosphatase |Carbohydrate phosphatase |Inositol monophosphatase/fructose-1,6-bisphosphatase-like |Fructose-1,6-bisphosphatase |Pig (Sus scrofa) [TaxId: 9823]
d1yyza_ : (CYS92) (PHE117) [view usage] : e.7.1.1 |Carbohydrate phosphatase |Carbohydrate phosphatase |Inositol monophosphatase/fructose-1,6-bisphosphatase-like |Fructose-1,6-bisphosphatase |Pig (Sus scrofa) [TaxId: 9823]
d1d0na4 : (GLN419) (GLY443) [view usage] : d.109.1.1 |Gelsolin-like |Actin depolymerizing proteins |Gelsolin-like |Gelsolin |Horse (Equus caballus) [TaxId: 9796]
d2f3ka_ : (VAL11) (GLU34) [view usage] : b.50.1.1 |Acid proteases |Acid proteases |Retroviral protease (retropepsin) |automated matches |Human immunodeficiency virus 1 [TaxId: 11676]
d3qb4d_ : (PRO34) (GLU65) [view usage] : g.7.1.3 |Snake toxin-like |Snake toxin-like |Extracellular domain of cell surface receptors |BMP receptor Ia ectodomain |Human (Homo sapiens) [TaxId: 9606]
d1ah2a_ : (VAL26) (PHE49) [view usage] : c.41.1.1 |Subtilisin-like |Subtilisin-like |Subtilases |Serine protease PB92 (subtilisin PB92) |Bacillus alcalophilus [TaxId: 1445]
d3zfeb_ : (VAL13) (GLY34) [view usage] : b.121.4.0 |Nucleoplasmin-like/VP (viral coat and capsid proteins) |Positive stranded ssRNA viruses |automated matches |automated matches |Human enterovirus 71 [TaxId: 39054]
d1c77a_ : (TYR24) (LYS57) [view usage] : d.15.5.1 |beta-Grasp (ubiquitin-like) |Staphylokinase/streptokinase |Staphylokinase/streptokinase |Staphylokinase |Staphylococcus aureus [TaxId: 1280]
d1wd3a1 : (TRP206) (GLY235) [view usage] : b.29.1.21 |Concanavalin A-like lectins/glucanases |Concanavalin A-like lectins/glucanases |Alpha-L-arabinofuranosidase B, N-terminal domain |Alpha-L-arabinofuranosidase B, N-terminal domain |Aspergillus kawachii [TaxId: 40384]
d1c01a_ : (HIS54) (GLN75) [view usage] : b.11.1.5 |gamma-Crystallin-like |gamma-Crystallin-like |Plant antimicrobial protein MIAMP1 |Plant antimicrobial protein MIAMP1 |Macadamia nut (Macadamia integrifolia) [TaxId: 60698]
d117ea_ : (ALA55) (GLN98) [view usage] : b.40.5.1 |OB-fold |Inorganic pyrophosphatase |Inorganic pyrophosphatase |Inorganic pyrophosphatase |Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
d2ch4a1 : (LEU547) (SER570) [view usage] : b.40.7.1 |OB-fold |CheW-like |CheW-like |Histidine kinase CheA, C-terminal domain |Thermotoga maritima [TaxId: 2336]
d3e77b_ : (VAL149) (ASP176) [view usage] : c.67.1.0 |PLP-dependent transferase-like |PLP-dependent transferases |automated matches |automated matches |Human (Homo sapiens) [TaxId: 9606]
d1h4ax1 : (LEU53) (HIS83) [view usage] : b.11.1.1 |gamma-Crystallin-like |gamma-Crystallin-like |Crystallins/Ca-binding development proteins |gamma-Crystallin |Human (Homo sapiens), isoform D [TaxId: 9606]
d1vw4v_ : (HIS43) (ILE71) [view usage] : i.1.1.2 |Ribosome and ribosomal fragments |Ribosome and ribosomal fragments |Large subunit |Eukaryotic, mitochondrial (54S or 39S subunit) |Saccharomyces cerevisiae [TaxId: 4932]
d4qgib_ : (VAL11) (GLU34) [view usage] : b.50.1.1 |Acid proteases |Acid proteases |Retroviral protease (retropepsin) |Human immunodeficiency virus type 1 protease |Human immunodeficiency virus type 1 lw12.3 isolate [TaxId: 82834]
d4gx6a_ : (CYS92) (ASP118) [view usage] : e.7.1.1 |Carbohydrate phosphatase |Carbohydrate phosphatase |Inositol monophosphatase/fructose-1,6-bisphosphatase-like |Fructose-1,6-bisphosphatase |Pig (Sus scrofa) [TaxId: 9823]
d2fcua_ : (PRO94) (ALA147) [view usage] : b.82.2.9 |Double-stranded beta-helix |Clavaminate synthase-like |PhyH-like |Syringomycin biosynthesis enzyme 2, SyrB2 |Pseudomonas syringae pv. syringae [TaxId: 321]
d1q56a_ : (GLU15) (GLU50) [view usage] : b.29.1.4 |Concanavalin A-like lectins/glucanases |Concanavalin A-like lectins/glucanases |Laminin G-like module |Agrin |Chicken (Gallus gallus) [TaxId: 9031]
d2ik6b_ : (ALA55) (GLN98) [view usage] : b.40.5.1 |OB-fold |Inorganic pyrophosphatase |Inorganic pyrophosphatase |Inorganic pyrophosphatase |Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
d2saka_ : (TYR24) (LYS57) [view usage] : d.15.5.1 |beta-Grasp (ubiquitin-like) |Staphylokinase/streptokinase |Staphylokinase/streptokinase |Staphylokinase |Staphylococcus aureus [TaxId: 1280]
d3u5id_ : (ARG72) (GLU111) [view usage] : i.1.1.1 |Ribosome and ribosomal fragments |Ribosome and ribosomal fragments |Ribosome complexes |Eukaryotic, cytoplasmic (80S ribosome functional complex) |Saccharomyces cerevisiae [TaxId: 559292]
d1ofla_ : (ASP56) (LEU91) [view usage] : b.80.1.4 |Single-stranded right-handed beta-helix |Pectin lyase-like |Chondroitinase B |Chondroitinase B |Pedobacter heparinus [TaxId: 984]
d1buic_ : (PRO23) (LYS57) [view usage] : d.15.5.1 |beta-Grasp (ubiquitin-like) |Staphylokinase/streptokinase |Staphylokinase/streptokinase |Staphylokinase |Staphylococcus aureus [TaxId: 1280]
d1xcda_ : (THR205) (GLY234) [view usage] : c.10.2.7 |Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) |L domain-like |Ngr ectodomain-like |Decorin |Cow (Bos taurus) [TaxId: 9913]
d3gbda2 : (GLU516) (SER546) [view usage] : b.71.1.0 |Glycosyl hydrolase domain |Glycosyl hydrolase domain |automated matches |automated matches |Protaminobacter rubrum [TaxId: 126825]
List of distinct SCOP folds where this concept is used (in one or more of its domains):
b.80, c.10, b.82, c.67, i.1, b.29, c.45, b.50, i.6, b.40, b.121, b.6, e.7, c.41, b.77, d.109, b.11, d.15, b.71, g.7