Tableau information
Concept source: d1vh7a_ amino acid (a.a.) range (VAL125)(GLY150)
nSSEs in this Concept: 3
String of secondary struct.elems. (SSEs) defining this concept: EEE
Each SSE's a.a.range: (start resi) (end resi) SSEtype (H=Helix; E=Strand) followed by a numeric SSE ID:
(VAL125) (ALA131) E1
(GLU137) (THR142) E2
(LYS146) (GLY150) E3
Orientation angles° of SSE-pairs; those in contact shown in bold font
E1
E2 125.6° E2
E3 -89.1° 129.8°
Footnote: Inferred from this concept's usages (listed below) was the angular variance of 1σ = ±7.4° about each orientation angle shown above.
Loci of concept usages (shown as a range of a.a. residue ids) in SCOP(v2.05) domains, along with their brief legend taken from SCOP
d1nyoa_ : (GLY144) (ALA163) [view usage] : b.118.1.1 |FAS1 domain |FAS1 domain |FAS1 domain |Immunogenic protein MPT70 |Mycobacterium tuberculosis [TaxId: 1773]
d1gofa2 : (ASN66) (SER98) [view usage] : b.18.1.1 |Galactose-binding domain-like |Galactose-binding domain-like |Galactose-binding domain |Galactose oxidase, N-terminal domain |Dactylium dendroides [TaxId: 5132]
d4qppb_ : (GLY273) (SER308) [view usage] : c.66.1.0 |S-adenosyl-L-methionine-dependent methyltransferases |S-adenosyl-L-methionine-dependent methyltransferases |automated matches |automated matches |Human (Homo sapiens) [TaxId: 9606]
d3hnbm_ : (PRO2299) (GLY2325) [view usage] : b.18.1.2 |Galactose-binding domain-like |Galactose-binding domain-like |Discoidin domain (FA58C, coagulation factor 5/8 C-terminal domain) |automated matches |Human (Homo sapiens) [TaxId: 9606]
d3eg4a_ : (GLY232) (TYR260) [view usage] : b.81.1.2 |Single-stranded left-handed beta-helix |Trimeric LpxA-like enzymes |Tetrahydrodipicolinate-N-succinlytransferase, THDP-succinlytransferase, DapD |automated matches |Brucella suis [TaxId: 29461]
d1qwdb_ : (MET85) (VAL118) [view usage] : b.60.1.1 |Lipocalins |Lipocalins |Retinol binding protein-like |Outer membrane lipoprotein Blc |Escherichia coli [TaxId: 562]
d2co2a_ : (SER99) (LEU121) [view usage] : b.2.3.2 |Common fold of diphtheria toxin/transcription factors/cytochrome f |Bacterial adhesins |Pilus subunits |automated matches |Salmonella enterica [TaxId: 28901]
d2cayb1 : (HIS5) (SER29) [view usage] : b.55.1.12 |PH domain-like barrel |PH domain-like |VPS36 N-terminal domain-like |Vacuolar protein sorting protein 36, VPS36 |Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
d4l1la_ : (ASN220) (MET256) [view usage] : b.7.1.2 |C2 domain-like |C2 domain (Calcium/lipid-binding domain, CaLB) |Synaptotagmin-like (S variant) |C2 domain from protein kinase c (alpha) |Norway rat (Rattus norvegicus) [TaxId: 10116]
d1g7ca2 : (PRO357) (SER394) [view usage] : b.44.1.1 |Elongation factor/aminomethyltransferase common domain |EF-Tu/eEF-1alpha/eIF2-gamma C-terminal domain |EF-Tu/eEF-1alpha/eIF2-gamma C-terminal domain |Elongation factor eEF-1alpha, C-terminal domain |Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
d1iw7c_ : (GLY116) (ARG142) [view usage] : e.29.1.1 |beta and beta-prime subunits of DNA dependent RNA-polymerase |beta and beta-prime subunits of DNA dependent RNA-polymerase |RNA-polymerase beta |RNA-polymerase beta |Thermus thermophilus [TaxId: 274]
d1jh5a_ : (ALA110) (ASP132) [view usage] : b.22.1.1 |TNF-like |TNF-like |TNF-like |Soluble part of TALL-1, sTALL-1 (BAFF) |Human (Homo sapiens) [TaxId: 9606]
d1ue0b_ : (LEU287) (ALA321) [view usage] : b.51.1.1 |ValRS/IleRS/LeuRS editing domain |ValRS/IleRS/LeuRS editing domain |ValRS/IleRS/LeuRS editing domain |Isoleucyl-tRNA synthetase (IleRS) |Thermus thermophilus [TaxId: 274]
d4jnfa1 : (PRO396) (VAL425) [view usage] : b.130.1.1 |Heat shock protein 70kD (HSP70), peptide-binding domain |Heat shock protein 70kD (HSP70), peptide-binding domain |Heat shock protein 70kD (HSP70), peptide-binding domain |automated matches |Escherichia coli K-12 [TaxId: 83333]
d1ynjc1 : (GLY116) (ARG142) [view usage] : e.29.1.1 |beta and beta-prime subunits of DNA dependent RNA-polymerase |beta and beta-prime subunits of DNA dependent RNA-polymerase |RNA-polymerase beta |RNA-polymerase beta |Thermus aquaticus [TaxId: 271]
d1ui7a1 : (ASN418) (GLU452) [view usage] : b.30.2.1 |Supersandwich |Amine oxidase catalytic domain |Amine oxidase catalytic domain |Copper amine oxidase, domain 3 |Arthrobacter globiformis [TaxId: 1665]
d2pnrc_ : (THR145) (GLU182) [view usage] : b.84.1.1 |Barrel-sandwich hybrid |Single hybrid motif |Biotinyl/lipoyl-carrier proteins and domains |Lipoyl domain of dihydrolipoamide acetyltransferase |Human (Homo sapiens) [TaxId: 9606]
d4fyra1 : (LYS152) (GLU181) [view usage] : b.98.1.0 |Zn aminopeptidase N-terminal domain |Zn aminopeptidase N-terminal domain |automated matches |automated matches |Human (Homo sapiens) [TaxId: 9606]
d1dmua_ : (PRO197) (SER239) [view usage] : c.52.1.4 |Restriction endonuclease-like |Restriction endonuclease-like |Restriction endonuclease BglI |Restriction endonuclease BglI |Bacillus subtilis [TaxId: 1423]
d2gixa_ : (ASN198) (LEU231) [view usage] : b.1.18.16 |Immunoglobulin-like beta-sandwich |E set domains |Cytoplasmic domain of inward rectifier potassium channel |automated matches |Mouse (Mus musculus) [TaxId: 10090]
d4msva_ : (PHE249) (GLU270) [view usage] : b.22.1.0 |TNF-like |TNF-like |automated matches |automated matches |Human (Homo sapiens) [TaxId: 9606]
d1jkga_ : (GLY97) (ILE128) [view usage] : d.17.4.2 |Cystatin-like |NTF2-like |NTF2-like |NTF2-related export protein 1 (p15) |Human (Homo sapiens) [TaxId: 9606]
d1cz4a2 : (ASP133) (GLU174) [view usage] : d.31.1.1 |Cdc48 domain 2-like |Cdc48 domain 2-like |Cdc48 domain 2-like |C-terminal domain of VAT-N, VAT-Nc |Thermoplasma acidophilum [TaxId: 2303]
d3nahb_ : (GLY390) (ASP410) [view usage] : e.8.1.4 |DNA/RNA polymerases |DNA/RNA polymerases |RNA-dependent RNA-polymerase |automated matches |Murine norovirus 1 [TaxId: 223997]
d3cnca_ : (ARG309) (TYR348) [view usage] : b.21.1.1 |Virus attachment protein globular domain |Virus attachment protein globular domain |Adenovirus fiber protein "knob" domain |Adenovirus fiber protein "knob" domain |Human adenovirus 16
d2wuha_ : (PRO157) (GLY184) [view usage] : b.18.1.0 |Galactose-binding domain-like |Galactose-binding domain-like |automated matches |automated matches |Human (Homo sapiens) [TaxId: 9606]
d1n8yc4 : (GLY582) (ILE607) [view usage] : g.3.9.1 |Knottins (small inhibitors, toxins, lectins) |Growth factor receptor domain |Growth factor receptor domain |Protooncoprotein Her2 extracellular domain |Norway rat (Rattus norvegicus) [TaxId: 10116]
d1o70a2 : (SER565) (ASN591) [view usage] : b.118.1.1 |FAS1 domain |FAS1 domain |FAS1 domain |Fasciclin I |Fruit fly (Drosophila melanogaster) [TaxId: 7227]
d1sddb4 : (PRO2153) (GLY2179) [view usage] : b.18.1.2 |Galactose-binding domain-like |Galactose-binding domain-like |Discoidin domain (FA58C, coagulation factor 5/8 C-terminal domain) |C2 domain of factor V |Cow (Bos taurus) [TaxId: 9913]
d1u4fa_ : (ASN198) (LEU231) [view usage] : b.1.18.16 |Immunoglobulin-like beta-sandwich |E set domains |Cytoplasmic domain of inward rectifier potassium channel |automated matches |Mouse (Mus musculus) [TaxId: 10090]
d1hb5b_ : (LEU285) (ARG317) [view usage] : i.6.1.1 |Viruses and virus-receptor complexes |Viruses and virus-receptor complexes |Viruses and virus-receptor complexes |p3 shell |Bacteriophage PRD1 [TaxId: 10658]
d1k3ia2 : (ASN66) (SER98) [view usage] : b.18.1.1 |Galactose-binding domain-like |Galactose-binding domain-like |Galactose-binding domain |Galactose oxidase, N-terminal domain |Fungus (Fusarium sp.) [TaxId: 29916]
d2zkql1 : (VAL55) (ASN87) [view usage] : i.1.1.1 |Ribosome and ribosomal fragments |Ribosome and ribosomal fragments |Ribosome complexes |Eukaryotic, cytoplasmic (80S ribosome functional complex) |Dog (Canis familiaris) [TaxId: 9615]
d2go2a_ : (ASP17) (PHE78) [view usage] : b.42.4.0 |beta-Trefoil |STI-like |automated matches |automated matches |Bauhinia bauhinioides [TaxId: 166014]
d1wisa1 : (ARG32) (LEU68) [view usage] : b.1.2.1 |Immunoglobulin-like beta-sandwich |Fibronectin type III |Fibronectin type III |Sidekick 2 |Human (Homo sapiens) [TaxId: 9606]
d1p7hl2 : (SER488) (ASP514) [view usage] : b.2.5.3 |Common fold of diphtheria toxin/transcription factors/cytochrome f |p53-like transcription factors |Rel/Dorsal transcription factors, DNA-binding domain |T-cell transcription factor NFAT1 (NFATC), DNA-binding domain |Human (Homo sapiens) [TaxId: 9606]
d4ki5m_ : (PRO2299) (GLY2325) [view usage] : b.18.1.2 |Galactose-binding domain-like |Galactose-binding domain-like |Discoidin domain (FA58C, coagulation factor 5/8 C-terminal domain) |automated matches |Human (Homo sapiens) [TaxId: 9606]
d3ko7b_ : (MET1) (ILE29) [view usage] : c.110.1.0 |DTD-like |DTD-like |automated matches |automated matches |Plasmodium falciparum [TaxId: 36329]
d1upsa2 : (ASN290) (GLY315) [view usage] : b.42.2.3 |beta-Trefoil |Ricin B-like lectins |GlcNAc-alpha-1,4-Gal-releasing endo-beta-galactosidase, GngC, C-terminal domain |GlcNAc-alpha-1,4-Gal-releasing endo-beta-galactosidase, GngC, C-terminal domain |Clostridium perfringens [TaxId: 1502]
d3sfub_ : (GLY390) (ASP410) [view usage] : e.8.1.4 |DNA/RNA polymerases |DNA/RNA polymerases |RNA-dependent RNA-polymerase |automated matches |Murine norovirus 1 [TaxId: 223997]
d2avwa_ : (VAL48) (ALA75) [view usage] : d.3.1.12 |Cysteine proteinases |Cysteine proteinases |IgG-specific endopeptidase IdeS (Sib38) |automated matches |Streptococcus pyogenes [TaxId: 293653]
d3j3bg_ : (LYS19) (ARG60) [view usage] : i.1.1.1 |Ribosome and ribosomal fragments |Ribosome and ribosomal fragments |Ribosome complexes |Eukaryotic, cytoplasmic (80S ribosome functional complex) |Homo sapiens [TaxId: 9606]
d3g7ka2 : (VAL183) (HIS209) [view usage] : d.21.1.0 |Diaminopimelate epimerase-like |Diaminopimelate epimerase-like |automated matches |automated matches |Eubacterium barkeri [TaxId: 1528]
d2gzba_ : (ASP16) (PHE77) [view usage] : b.42.4.0 |beta-Trefoil |STI-like |automated matches |automated matches |Bauhinia bauhinioides [TaxId: 166014]
d1g0yr2 : (ILE110) (LYS145) [view usage] : b.1.1.4 |Immunoglobulin-like beta-sandwich |Immunoglobulin |I set domains |Type-1 interleukin-1 receptor |Human (Homo sapiens) [TaxId: 9606]
d1o8pa_ : (GLN43) (LYS66) [view usage] : b.18.1.10 |Galactose-binding domain-like |Galactose-binding domain-like |Family 6 carbohydrate binding module, CBM6 |Putative xylanase |Clostridium stercorarium [TaxId: 1510]
d1dqga_ : (GLN5) (THR29) [view usage] : b.42.2.2 |beta-Trefoil |Ricin B-like lectins |Cysteine rich domain |Mannose receptor |Mouse (Mus musculus) [TaxId: 10090]
d5pepa_ : (GLY168) (ASP200) [view usage] : b.50.1.2 |Acid proteases |Acid proteases |Pepsin-like |Pepsin(ogen) |Pig (Sus scrofa) [TaxId: 9823]
d1huja_ : (ASN41) (CYS83) [view usage] : b.40.5.1 |OB-fold |Inorganic pyrophosphatase |Inorganic pyrophosphatase |Inorganic pyrophosphatase |Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
d1udza_ : (LEU287) (ALA321) [view usage] : b.51.1.1 |ValRS/IleRS/LeuRS editing domain |ValRS/IleRS/LeuRS editing domain |ValRS/IleRS/LeuRS editing domain |Isoleucyl-tRNA synthetase (IleRS) |Thermus thermophilus [TaxId: 274]
d2d37a_ : (ILE131) (SER155) [view usage] : b.45.1.0 |Split barrel-like |FMN-binding split barrel |automated matches |automated matches |Sulfolobus tokodaii [TaxId: 273063]
d1gmua1 : (ASP39) (ALA70) [view usage] : b.107.1.1 |Urease metallochaperone UreE, N-terminal domain |Urease metallochaperone UreE, N-terminal domain |Urease metallochaperone UreE, N-terminal domain |Urease metallochaperone UreE, N-terminal domain |Klebsiella aerogenes [TaxId: 28451]
d2hmjb_ : (ILE142) (ASP179) [view usage] : d.17.4.4 |Cystatin-like |NTF2-like |Ring hydroxylating beta subunit |Naphthalene 1,2-dioxygenase beta subunit |Pseudomonas sp. [TaxId: 306]
d2gzbb_ : (ASP16) (PHE77) [view usage] : b.42.4.0 |beta-Trefoil |STI-like |automated matches |automated matches |Bauhinia bauhinioides [TaxId: 166014]
d4fo8c_ : (PRO211) (TRP233) [view usage] : d.127.1.1 |Creatinase/aminopeptidase |Creatinase/aminopeptidase |Creatinase/aminopeptidase |automated matches |Pseudomonas aeruginosa [TaxId: 208964]
d1hnee_ : (GLN135) (VAL185) [view usage] : b.47.1.2 |Trypsin-like serine proteases |Trypsin-like serine proteases |Eukaryotic proteases |Elastase |Human (Homo sapiens) [TaxId: 9606]
d4hokg_ : (GLU2) (ASN28) [view usage] : d.144.1.7 |Protein kinase-like (PK-like) |Protein kinase-like (PK-like) |Protein kinases, catalytic subunit |automated matches |Human (Homo sapiens) [TaxId: 9606]
d1jova_ : (ILE43) (LEU98) [view usage] : b.30.5.7 |Supersandwich |Galactose mutarotase-like |Hypothetical protein HI1317 |Hypothetical protein HI1317 |Haemophilus influenzae [TaxId: 727]
d2d38a_ : (ILE131) (SER155) [view usage] : b.45.1.0 |Split barrel-like |FMN-binding split barrel |automated matches |automated matches |Sulfolobus tokodaii [TaxId: 273063]
d2avwb_ : (VAL48) (ALA75) [view usage] : d.3.1.12 |Cysteine proteinases |Cysteine proteinases |IgG-specific endopeptidase IdeS (Sib38) |automated matches |Streptococcus pyogenes [TaxId: 293653]
d1hqmc_ : (GLY116) (ARG142) [view usage] : i.8.1.1 |RNA polymerase |RNA polymerase |RNA polymerase |DNA-directed RNA polymerase alpha(2), beta, beta-prime and omega subunits |Thermus aquaticus [TaxId: 271]
d1lkta_ : (GLY29) (THR62) [view usage] : b.90.1.1 |Head-binding domain of phage P22 tailspike protein |Head-binding domain of phage P22 tailspike protein |Head-binding domain of phage P22 tailspike protein |Head-binding domain of phage P22 tailspike protein |Salmonella bacteriophage P22 [TaxId: 10754]
d1i6vc_ : (GLY116) (ARG142) [view usage] : e.29.1.1 |beta and beta-prime subunits of DNA dependent RNA-polymerase |beta and beta-prime subunits of DNA dependent RNA-polymerase |RNA-polymerase beta |RNA-polymerase beta |Thermus aquaticus [TaxId: 271]
d3zs4a_ : (GLN124) (GLY150) [view usage] : c.1.2.1 |TIM beta/alpha-barrel |Ribulose-phoshate binding barrel |Histidine biosynthesis enzymes |automated matches |Mycobacterium tuberculosis [TaxId: 83332]
d1jcha2 : (VAL198) (ILE232) [view usage] : b.110.1.1 |Cloacin translocation domain |Cloacin translocation domain |Cloacin translocation domain |Colicin E3 N-terminal domain |Escherichia coli [TaxId: 562]
d1yppa_ : (ASN92) (ASN116) [view usage] : b.40.5.1 |OB-fold |Inorganic pyrophosphatase |Inorganic pyrophosphatase |Inorganic pyrophosphatase |Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
d3l4ra_ : (GLN63) (LYS98) [view usage] : b.60.1.0 |Lipocalins |Lipocalins |automated matches |automated matches |Dog (Canis familiaris) [TaxId: 9615]
d1hb5c_ : (LEU285) (ARG317) [view usage] : i.6.1.1 |Viruses and virus-receptor complexes |Viruses and virus-receptor complexes |Viruses and virus-receptor complexes |p3 shell |Bacteriophage PRD1 [TaxId: 10658]
List of distinct SCOP folds where this concept is used (in one or more of its domains):
e.8, c.1, b.81, i.1, b.30, b.47, c.66, b.50, i.6, d.144, b.40, b.60, b.18, d.3, d.127, b.2, b.1, b.45, b.42, d.17,
d.21, b.84, b.21, b.55, c.52, b.22, c.110, b.7, i.8, b.51, b.130, b.98, b.44, g.3, d.31, b.110, e.29, b.118, b.107, b.90