Tableau information
Concept source: d2iaxa_ amino acid (a.a.) range (GLU225)(GLY245)
nSSEs in this Concept: 3
String of secondary struct.elems. (SSEs) defining this concept: EEE
Each SSE's a.a.range: (start resi) (end resi) SSEtype (H=Helix; E=Strand) followed by a numeric SSE ID:
(GLU225) (ALA228) E1
(ASP229) (PHE233) E2
(LEU239) (GLY245) E3
Orientation angles° of SSE-pairs; those in contact shown in bold font
E1
E2 -33.7° E2
E3 153.4° 161.3°
Footnote: Inferred from this concept's usages (listed below) was the angular variance of 1σ = ±8.6° about each orientation angle shown above.
Loci of concept usages (shown as a range of a.a. residue ids) in SCOP(v2.05) domains, along with their brief legend taken from SCOP
d1uasa1 : (GLY275) (PRO293) [view usage] : b.71.1.1 |Glycosyl hydrolase domain |Glycosyl hydrolase domain |alpha-Amylases, C-terminal beta-sheet domain |Melibiase |Rice (Oryza sativa) [TaxId: 4530]
d3vqsb_ : (ILE134) (PRO163) [view usage] : e.8.1.4 |DNA/RNA polymerases |DNA/RNA polymerases |RNA-dependent RNA-polymerase |automated matches |Hepatitis C virus [TaxId: 11103]
d1re6a_ : (HIS55) (LYS87) [view usage] : d.39.1.1 |DLC |DLC |DLC |Dynein light chain 2 (DLC2) |Mouse (Mus musculus) [TaxId: 10090]
d1k3wa2 : (TYR71) (LEU102) [view usage] : b.113.1.1 |N-terminal domain of MutM-like DNA repair proteins |N-terminal domain of MutM-like DNA repair proteins |N-terminal domain of MutM-like DNA repair proteins |Endonuclease VIII |Escherichia coli [TaxId: 562]
d1zt4c2 : (PRO93) (PHE118) [view usage] : d.19.1.1 |MHC antigen-recognition domain |MHC antigen-recognition domain |MHC antigen-recognition domain |CD1, alpha-1 and alpha-2 domains |Human (Homo sapiens), CD1a [TaxId: 9606]
d1tzaa_ : (SER7) (LEU39) [view usage] : b.1.23.1 |Immunoglobulin-like beta-sandwich |ApaG-like |ApaG-like |ApaG |Shewanella oneidensis [TaxId: 70863]
d2eeya_ : (MET139) (ARG159) [view usage] : d.58.21.0 |Ferredoxin-like |Molybdenum cofactor biosynthesis protein C, MoaC |automated matches |automated matches |Geobacillus kaustophilus [TaxId: 235909]
d1msaa_ : (GLY60) (THR99) [view usage] : b.78.1.1 |beta-Prism II |alpha-D-mannose-specific plant lectins |alpha-D-mannose-specific plant lectins |Lectin (agglutinin) |Snowdrop (Galanthus nivalis) [TaxId: 4670]
d3uwpa_ : (GLY264) (ILE317) [view usage] : c.66.1.31 |S-adenosyl-L-methionine-dependent methyltransferases |S-adenosyl-L-methionine-dependent methyltransferases |Catalytic, N-terminal domain of histone methyltransferase Dot1l |automated matches |Human (Homo sapiens) [TaxId: 9606]
d1qppb1 : (ASP81) (PRO117) [view usage] : b.1.11.1 |Immunoglobulin-like beta-sandwich |PapD-like |Pilus chaperone |Pilus chaperone PapD, N-domain |Escherichia coli [TaxId: 562]
d2dawa1 : (ALA57) (PRO84) [view usage] : d.20.1.3 |UBC-like |UBC-like |RWD domain |RWD domain-containing protein 2 |Human (Homo sapiens) [TaxId: 9606]
d2blna1 : (SER244) (THR278) [view usage] : b.46.1.1 |FMT C-terminal domain-like |FMT C-terminal domain-like |Post formyltransferase domain |Polymyxin resistance protein ArnA, domain 2 |Escherichia coli [TaxId: 562]
d2aj2a1 : (ARG95) (SER121) [view usage] : d.310.1.1 |VC0467-like |VC0467-like |VC0467-like |Hypothetical protein VC0467 |Vibrio cholerae [TaxId: 666]
d3bbou1 : (SER101) (LEU136) [view usage] : i.1.1.1 |Ribosome and ribosomal fragments |Ribosome and ribosomal fragments |Ribosome complexes |Eukaryotic, chloroplast (70S ribosome functional complex) |Spinach (Spinacia oleracea) [TaxId: 3562]
d1vsap1 : (GLY65) (ARG100) [view usage] : b.155.1.1 |L21p-like |L21p-like |Ribosomal protein L21p |Ribosomal protein L21p |Thermus thermophilus [TaxId: 274]
d1yntf2 : (GLU2229) (ALA2254) [view usage] : b.6.2.1 |Cupredoxin-like |Major surface antigen p30, SAG1 |Major surface antigen p30, SAG1 |automated matches |Toxoplasma gondii [TaxId: 5811]
d3iifc_ : (ASP181) (VAL200) [view usage] : c.50.1.2 |Macro domain-like |Macro domain-like |Macro domain |Histone macro-H2a1.1 |Human (Homo sapiens) [TaxId: 9606]
d3fvrb_ : (SER67) (VAL117) [view usage] : c.69.1.25 |alpha/beta-Hydrolases |alpha/beta-Hydrolases |Acetyl xylan esterase-like |automated matches |Bacillus pumilus [TaxId: 1408]
d1i4ja_ : (LYS72) (GLU109) [view usage] : d.55.1.1 |Ribosomal protein L22 |Ribosomal protein L22 |Ribosomal protein L22 |Ribosomal protein L22 |Thermus aquaticus, subsp. Thermus thermophilus [TaxId: 271]
d2ew0a1 : (ALA79) (THR104) [view usage] : d.310.1.1 |VC0467-like |VC0467-like |VC0467-like |Hypothetical protein ACIAD0353 |Acinetobacter sp. ADP1 [TaxId: 62977]
d2fwsa1 : (VAL371) (GLY398) [view usage] : b.1.27.1 |Immunoglobulin-like beta-sandwich |CalX-like |CalX-beta domain |Sodium/calcium exchanger 1 |Dog (Canis familiaris) [TaxId: 9615]
d2oq4a2 : (VAL73) (TYR103) [view usage] : b.113.1.1 |N-terminal domain of MutM-like DNA repair proteins |N-terminal domain of MutM-like DNA repair proteins |N-terminal domain of MutM-like DNA repair proteins |Endonuclease VIII |Escherichia coli [TaxId: 562]
d1ewqa1 : (TYR449) (THR477) [view usage] : a.113.1.1 |DNA repair protein MutS, domain III |DNA repair protein MutS, domain III |DNA repair protein MutS, domain III |DNA repair protein MutS, domain III |Thermus aquaticus [TaxId: 271]
d2idei_ : (LEU135) (ARG155) [view usage] : d.58.21.0 |Ferredoxin-like |Molybdenum cofactor biosynthesis protein C, MoaC |automated matches |automated matches |Thermus thermophilus HB8 [TaxId: 300852]
d1ea9c1 : (ALA5) (ARG28) [view usage] : b.1.18.2 |Immunoglobulin-like beta-sandwich |E set domains |E-set domains of sugar-utilizing enzymes |Maltogenic amylase, N-terminal domain N |Bacillus sp., cyclomaltodextrinase [TaxId: 1409]
d1ec8a2 : (PRO34) (GLU54) [view usage] : d.54.1.1 |Enolase N-terminal domain-like |Enolase N-terminal domain-like |Enolase N-terminal domain-like |D-glucarate dehydratase |Escherichia coli [TaxId: 562]
d1szna1 : (GLU380) (LEU409) [view usage] : b.71.1.1 |Glycosyl hydrolase domain |Glycosyl hydrolase domain |alpha-Amylases, C-terminal beta-sheet domain |Melibiase |Trichoderma reesei [TaxId: 51453]
d1zc8k1 : (GLY103) (GLY127) [view usage] : b.111.1.1 |Small protein B (SmpB) |Small protein B (SmpB) |Small protein B (SmpB) |Small protein B (SmpB) |Thermus thermophilus [TaxId: 274]
d1k8ha_ : (GLY103) (GLY127) [view usage] : b.111.1.1 |Small protein B (SmpB) |Small protein B (SmpB) |Small protein B (SmpB) |Small protein B (SmpB) |Aquifex aeolicus [TaxId: 63363]
d1m3ia_ : (GLN405) (TRP428) [view usage] : f.9.1.1 |Perfringolysin |Perfringolysin |Perfringolysin |Perfringolysin |Clostridium perfringens [TaxId: 1502]
d3vqsc_ : (ILE134) (PRO163) [view usage] : e.8.1.4 |DNA/RNA polymerases |DNA/RNA polymerases |RNA-dependent RNA-polymerase |automated matches |Hepatitis C virus [TaxId: 11103]
d1bvoa_ : (ASN188) (ASP220) [view usage] : b.2.5.3 |Common fold of diphtheria toxin/transcription factors/cytochrome f |p53-like transcription factors |Rel/Dorsal transcription factors, DNA-binding domain |Dorsal homologue Gambif1 |African malaria mosquito (Anopheles gambiae) [TaxId: 7165]
d2hafa1 : (ARG97) (SER123) [view usage] : d.310.1.1 |VC0467-like |VC0467-like |VC0467-like |Hypothetical protein VC0467 |Vibrio cholerae [TaxId: 666]
d2ccva1 : (VAL46) (ARG67) [view usage] : b.154.1.1 |HPA-like |Agglutinin HPA-like |Agglutinin HPA-like |Agglutinin HPA |Roman snail (Helix pomatia) [TaxId: 6536]
d2edfa_ : (SER5) (GLU31) [view usage] : b.1.1.0 |Immunoglobulin-like beta-sandwich |Immunoglobulin |automated matches |automated matches |Human (Homo sapiens) [TaxId: 9606]
d2g6vb2 : (PRO346) (GLY366) [view usage] : c.71.1.0 |Dihydrofolate reductase-like |Dihydrofolate reductase-like |automated matches |automated matches |Escherichia coli [TaxId: 562]
d1vs6r1 : (GLU70) (SER102) [view usage] : b.155.1.1 |L21p-like |L21p-like |Ribosomal protein L21p |Ribosomal protein L21p |Escherichia coli [TaxId: 562]
d1npla_ : (GLY60) (THR99) [view usage] : b.78.1.1 |beta-Prism II |alpha-D-mannose-specific plant lectins |alpha-D-mannose-specific plant lectins |Lectin (agglutinin) |Daffodil (Narcissus pseudonarcissus) [TaxId: 39639]
d1t16a_ : (ALA261) (SER297) [view usage] : f.4.3.4 |Transmembrane beta-barrels |Porins |Outer membrane protein transport protein |Long-chain fatty acid transport protein FadL |Escherichia coli [TaxId: 562]
d3agxa1 : (THR216) (ASN245) [view usage] : b.4.1.0 |HSP40/DnaJ peptide-binding domain |HSP40/DnaJ peptide-binding domain |automated matches |automated matches |Human (Homo sapiens) [TaxId: 9606]
d1tq5a1 : (MSE1) (THR23) [view usage] : b.82.1.12 |Double-stranded beta-helix |RmlC-like cupins |Pirin-like |Hypothetical protein YhhW |Escherichia coli [TaxId: 562]
d2ixva2 : (TRP149) (VAL186) [view usage] : c.1.8.8 |TIM beta/alpha-barrel |(Trans)glycosidases |1,4-beta-N-acetylmuraminidase |automated matches |Streptococcus phage [TaxId: 10747]
d1n0la1 : (ASP81) (PRO117) [view usage] : b.1.11.1 |Immunoglobulin-like beta-sandwich |PapD-like |Pilus chaperone |Pilus chaperone PapD, N-domain |Escherichia coli [TaxId: 562]
d1ox4a2 : (SER175) (GLN191) [view usage] : c.23.16.1 |Flavodoxin-like |Class I glutamine amidotransferase-like |Class I glutamine amidotransferases (GAT) |GAT subunit, HisH, (or domain) of imidazoleglycerolphosphate synthase HisF |Baker's yeast (Saccharomyces cerevisiae), His7 [TaxId: 4932]
d1le9a2 : (ASN155) (ASP185) [view usage] : b.2.5.3 |Common fold of diphtheria toxin/transcription factors/cytochrome f |p53-like transcription factors |Rel/Dorsal transcription factors, DNA-binding domain |p65 subunit of NF-kappa B (NFKB), N-terminal domain |Mouse (Mus musculus) [TaxId: 10090]
d1k32a3 : (LYS538) (VAL602) [view usage] : b.69.9.1 |7-bladed beta-propeller |Tricorn protease domain 2 |Tricorn protease domain 2 |Tricorn protease domain 2 |Thermoplasma acidophilum [TaxId: 2303]
d3dpaa1 : (ARG82) (PRO117) [view usage] : b.1.11.1 |Immunoglobulin-like beta-sandwich |PapD-like |Pilus chaperone |Pilus chaperone PapD, N-domain |Escherichia coli [TaxId: 562]
d4iiqc1 : (ILE1) (TYR28) [view usage] : b.1.1.0 |Immunoglobulin-like beta-sandwich |Immunoglobulin |automated matches |automated matches |Cow (Bos taurus) [TaxId: 9913]
d1xppb_ : (GLU8) (GLU24) [view usage] : d.74.3.2 |DCoH-like |RBP11-like subunits of RNA polymerase |RBP11/RpoL |DNA-directed RNA polymerase subunit L, RpoL |Thermoplasma acidophilum [TaxId: 2303]
d3fvra_ : (SER67) (VAL117) [view usage] : c.69.1.25 |alpha/beta-Hydrolases |alpha/beta-Hydrolases |Acetyl xylan esterase-like |automated matches |Bacillus pumilus [TaxId: 1408]
d3jqme_ : (LEU135) (ARG155) [view usage] : d.58.21.0 |Ferredoxin-like |Molybdenum cofactor biosynthesis protein C, MoaC |automated matches |automated matches |Thermus thermophilus HB8 [TaxId: 300852]
d1bbia_ : (ASP26) (ASP56) [view usage] : g.3.13.1 |Knottins (small inhibitors, toxins, lectins) |Bowman-Birk inhibitor, BBI |Bowman-Birk inhibitor, BBI |Bowman-Birk inhibitor, BBI |Soybean (Glycine max) [TaxId: 3847]
d1fq3a_ : (ILE179) (LYS230) [view usage] : b.47.1.2 |Trypsin-like serine proteases |Trypsin-like serine proteases |Eukaryotic proteases |Granzyme B |Human (Homo sapiens) [TaxId: 9606]
d3gnwb_ : (ILE134) (PRO163) [view usage] : e.8.1.4 |DNA/RNA polymerases |DNA/RNA polymerases |RNA-dependent RNA-polymerase |Viral RNA polymerase |Hepatitis c virus isolate [TaxId: 420174]
d3wmmh2 : (PHE58) (ALA78) [view usage] : b.41.1.1 |PRC-barrel domain |PRC-barrel domain |Photosynthetic reaction centre, H-chain, cytoplasmic domain |automated matches |Thermochromatium tepidum [TaxId: 1050]
d2f7fa1 : (LEU328) (LYS349) [view usage] : c.1.17.1 |TIM beta/alpha-barrel |Nicotinate/Quinolinate PRTase C-terminal domain-like |NadC C-terminal domain-like |Putative nicotinate phosphoribosyltransferase EF2626 |Enterococcus faecalis [TaxId: 1351]
d3qrba1 : (ASP1) (SER26) [view usage] : b.1.6.1 |Immunoglobulin-like beta-sandwich |Cadherin-like |Cadherin |E-cadherin (epithelial) |Mouse (Mus musculus) [TaxId: 10090]
d1h09a2 : (TRP149) (VAL186) [view usage] : c.1.8.8 |TIM beta/alpha-barrel |(Trans)glycosidases |1,4-beta-N-acetylmuraminidase |N-terminal domain of endolysin |Bacteriophage cp-1 [TaxId: 10747]
d2idec_ : (LEU135) (ARG155) [view usage] : d.58.21.0 |Ferredoxin-like |Molybdenum cofactor biosynthesis protein C, MoaC |automated matches |automated matches |Thermus thermophilus HB8 [TaxId: 300852]
d1obaa2 : (TRP149) (VAL186) [view usage] : c.1.8.8 |TIM beta/alpha-barrel |(Trans)glycosidases |1,4-beta-N-acetylmuraminidase |N-terminal domain of endolysin |Bacteriophage cp-1 [TaxId: 10747]
d1scza_ : (ASN319) (ASP374) [view usage] : c.43.1.1 |CoA-dependent acyltransferases |CoA-dependent acyltransferases |CAT-like |Dihydrolipoamide succinyltransferase |Escherichia coli [TaxId: 562]
d3jqjh_ : (LEU135) (ARG155) [view usage] : d.58.21.0 |Ferredoxin-like |Molybdenum cofactor biosynthesis protein C, MoaC |automated matches |automated matches |Thermus thermophilus HB8 [TaxId: 300852]
d2idef_ : (LEU135) (ARG155) [view usage] : d.58.21.0 |Ferredoxin-like |Molybdenum cofactor biosynthesis protein C, MoaC |automated matches |automated matches |Thermus thermophilus HB8 [TaxId: 300852]
List of distinct SCOP folds where this concept is used (in one or more of its domains):
b.68, e.8, c.1, b.82, c.69, d.58, b.69, i.1, b.47, c.66, c.23, f.4, b.2, b.6, c.71, b.1, d.20, c.43, c.50, d.19,
b.41, b.113, d.74, d.54, b.71, d.39, a.113, g.3, d.310, b.4, b.78, f.9, b.46, b.111, d.55, b.154, b.155