Tableau information
Concept source: d1t1la_ amino acid (a.a.) range (SER382)(PHE421)
nSSEs in this Concept: 3
String of secondary struct.elems. (SSEs) defining this concept: EEE
Each SSE's a.a.range: (start resi) (end resi) SSEtype (H=Helix; E=Strand) followed by a numeric SSE ID:
(SER382) (GLN393) E1
(VAL395) (GLY400) E2
(PRO401) (PHE421) E3
Orientation angles° of SSE-pairs; those in contact shown in bold font
E1
E2 -65.1° E2
E3 169.6° 119.5°
Footnote: Inferred from this concept's usages (listed below) was the angular variance of 1σ = ±10.4° about each orientation angle shown above.
Loci of concept usages (shown as a range of a.a. residue ids) in SCOP(v2.05) domains, along with their brief legend taken from SCOP
d1uw8a_ : (PHE226) (ASP247) [view usage] : b.82.1.2 |Double-stranded beta-helix |RmlC-like cupins |Germin/Seed storage 7S protein |Oxalate decarboxylase OxdC (YvrK) |Bacillus subtilis [TaxId: 1423]
d1gofa2 : (ALA15) (MET59) [view usage] : b.18.1.1 |Galactose-binding domain-like |Galactose-binding domain-like |Galactose-binding domain |Galactose oxidase, N-terminal domain |Dactylium dendroides [TaxId: 5132]
d2q9qb2 : (GLU177) (LYS200) [view usage] : d.344.1.3 |GINS/PriA/YqbF domain |PriA/YqbF domain |SLD5 C-terminal domain-like |GINS complex subunit 4, SLD5 |Human (Homo sapiens) [TaxId: 9606]
d2jxta1 : (LYS4) (ASN28) [view usage] : d.355.1.1 |RplX-like |RplX-like |RplX-like |Ribosomal protein LX, RplX |Methanobacterium thermoautotrophicum [TaxId: 145262]
d3mhab_ : (ASP151) (GLY170) [view usage] : b.125.1.0 |LolA-like prokaryotic lipoproteins and lipoprotein localization factors |Prokaryotic lipoproteins and lipoprotein localization factors |automated matches |automated matches |Mycobacterium tuberculosis [TaxId: 83332]
d1e5pb_ : (GLY8) (TYR39) [view usage] : b.60.1.1 |Lipocalins |Lipocalins |Retinol binding protein-like |Aphrodisin, a sex pheromone |Golden hamster (Mesocricetus auratus) [TaxId: 10036]
d2uy8a_ : (PHE226) (ASP247) [view usage] : b.82.1.2 |Double-stranded beta-helix |RmlC-like cupins |Germin/Seed storage 7S protein |automated matches |Bacillus subtilis [TaxId: 1423]
d2gtlm1 : (SER109) (ILE132) [view usage] : b.61.7.1 |Streptavidin-like |Extracellular hemoglobin linker subunit, receptor domain |Extracellular hemoglobin linker subunit, receptor domain |Hemoglobin linker chain l1 |Common earthworm (Lumbricus terrestris) [TaxId: 6398]
d3i4bb_ : (LYS36) (ASP58) [view usage] : d.144.1.7 |Protein kinase-like (PK-like) |Protein kinase-like (PK-like) |Protein kinases, catalytic subunit |Glycogen synthase kinase-3 beta (Gsk3b) |Human (Homo sapiens) [TaxId: 9606]
d1mnga2 : (SER130) (PRO149) [view usage] : d.44.1.1 |Fe,Mn superoxide dismutase (SOD), C-terminal domain |Fe,Mn superoxide dismutase (SOD), C-terminal domain |Fe,Mn superoxide dismutase (SOD), C-terminal domain |Mn superoxide dismutase (MnSOD) |Thermus thermophilus [TaxId: 274]
d1g6ra2 : (GLY159) (ASN185) [view usage] : b.1.1.2 |Immunoglobulin-like beta-sandwich |Immunoglobulin |C1 set domains (antibody constant domain-like) |T-cell antigen receptor |Mouse (Mus musculus), alpha-chain [TaxId: 10090]
d3cqoa2 : (LYS159) (SER204) [view usage] : b.18.1.0 |Galactose-binding domain-like |Galactose-binding domain-like |automated matches |automated matches |Morone saxatilis [TaxId: 34816]
d4f1ma_ : (GLY1038) (ASP1061) [view usage] : d.144.1.0 |Protein kinase-like (PK-like) |Protein kinase-like (PK-like) |automated matches |automated matches |Slime mold (Dictyostelium discoideum) [TaxId: 44689]
d1exfa_ : (VAL210) (GLY232) [view usage] : b.47.1.1 |Trypsin-like serine proteases |Trypsin-like serine proteases |Prokaryotic proteases |Epidermolytic (exfoliative) toxin A |Staphylococcus aureus [TaxId: 1280]
d2gzoa1 : (GLY83) (THR107) [view usage] : d.310.1.1 |VC0467-like |VC0467-like |VC0467-like |Hypotheical protein SO3346 |Shewanella oneidensis [TaxId: 70863]
d2v09a_ : (PHE226) (ASP247) [view usage] : b.82.1.2 |Double-stranded beta-helix |RmlC-like cupins |Germin/Seed storage 7S protein |automated matches |Bacillus subtilis [TaxId: 1423]
d3vr8b1 : (LYS33) (ASP58) [view usage] : d.15.4.0 |beta-Grasp (ubiquitin-like) |2Fe-2S ferredoxin-like |automated matches |automated matches |Pig roundworm (Ascaris suum) [TaxId: 6253]
d1nvjb_ : (ARG78) (THR100) [view usage] : d.41.5.1 |alpha/beta-Hammerhead |Molybdopterin synthase subunit MoaE |Molybdopterin synthase subunit MoaE |Molybdopterin synthase subunit MoaE |Escherichia coli [TaxId: 562]
d4meta_ : (PHE226) (ASP247) [view usage] : b.82.1.2 |Double-stranded beta-helix |RmlC-like cupins |Germin/Seed storage 7S protein |automated matches |Bacillus subtilis [TaxId: 224308]
d1yq3b1 : (ARG10) (GLU34) [view usage] : d.15.4.2 |beta-Grasp (ubiquitin-like) |2Fe-2S ferredoxin-like |2Fe-2S ferredoxin domains from multidomain proteins |Succinate dehydogenase iron-sulfur protein, N-terminal domain |Chicken (Gallus gallus) [TaxId: 9031]
d1vdmg_ : (LEU119) (PHE142) [view usage] : c.61.1.1 |PRTase-like |PRTase-like |Phosphoribosyltransferases (PRTases) |Pprobable purine phosphoribosyltransferase PH0095 |Pyrococcus horikoshii [TaxId: 53953]
d3zuni_ : (GLU134) (LEU153) [view usage] : b.3.3.1 |Prealbumin-like |VHL |VHL |automated matches |Human (Homo sapiens) [TaxId: 9606]
d1e5pc_ : (GLY8) (TYR39) [view usage] : b.60.1.1 |Lipocalins |Lipocalins |Retinol binding protein-like |Aphrodisin, a sex pheromone |Golden hamster (Mesocricetus auratus) [TaxId: 10036]
d3zvjh_ : (PRO10) (LEU27) [view usage] : c.47.1.0 |Thioredoxin fold |Thioredoxin-like |automated matches |automated matches |Blood fluke (Schistosoma mansoni) [TaxId: 6183]
d1h8fb_ : (SER35) (ASP58) [view usage] : d.144.1.7 |Protein kinase-like (PK-like) |Protein kinase-like (PK-like) |Protein kinases, catalytic subunit |Glycogen synthase kinase-3 beta (Gsk3b) |Human (Homo sapiens) [TaxId: 9606]
d2dl2a1 : (PHE45) (ILE66) [view usage] : b.1.1.4 |Immunoglobulin-like beta-sandwich |Immunoglobulin |I set domains |Killer cell inhibitory receptor |Human (Homo sapiens), 2dl2 [TaxId: 9606]
d2a2ab_ : (PHE24) (SER49) [view usage] : d.144.1.0 |Protein kinase-like (PK-like) |Protein kinase-like (PK-like) |automated matches |automated matches |Human (Homo sapiens) [TaxId: 9606]
d1j58a_ : (PHE226) (ASP247) [view usage] : b.82.1.2 |Double-stranded beta-helix |RmlC-like cupins |Germin/Seed storage 7S protein |Oxalate decarboxylase OxdC (YvrK) |Bacillus subtilis [TaxId: 1423]
d1ubga1 : (ARG243) (ASP263) [view usage] : c.37.1.11 |P-loop containing nucleoside triphosphate hydrolases |P-loop containing nucleoside triphosphate hydrolases |RecA protein-like (ATPase-domain) |RecA protein, ATPase-domain |Mycobacterium smegmatis [TaxId: 1772]
d4ni2b_ : (GLN581) (ARG606) [view usage] : d.58.29.0 |Ferredoxin-like |Nucleotide cyclase |automated matches |automated matches |Human (Homo sapiens) [TaxId: 9606]
d1l3ja_ : (PHE226) (ASP247) [view usage] : b.82.1.2 |Double-stranded beta-helix |RmlC-like cupins |Germin/Seed storage 7S protein |Oxalate decarboxylase OxdC (YvrK) |Bacillus subtilis [TaxId: 1423]
d1epaa_ : (GLY13) (LEU43) [view usage] : b.60.1.1 |Lipocalins |Lipocalins |Retinol binding protein-like |Retinoic acid-binding protein |Norway rat (Rattus norvegicus) [TaxId: 10116]
d3zrci_ : (GLU134) (LEU153) [view usage] : b.3.3.1 |Prealbumin-like |VHL |VHL |automated matches |Human (Homo sapiens) [TaxId: 9606]
d1k3ia2 : (ALA15) (MET59) [view usage] : b.18.1.1 |Galactose-binding domain-like |Galactose-binding domain-like |Galactose-binding domain |Galactose oxidase, N-terminal domain |Fungus (Fusarium sp.) [TaxId: 29916]
d1vs6u1 : (THR76) (PHE95) [view usage] : b.34.5.1 |SH3-like barrel |Translation proteins SH3-like domain |Ribosomal proteins L24p and L21e |Ribosomal proteins L24 (L24p) |Escherichia coli [TaxId: 562]
d1e8ka_ : (GLU88) (SER117) [view usage] : b.62.1.1 |Cyclophilin-like |Cyclophilin-like |Cyclophilin (peptidylprolyl isomerase) |Cyclophilin (eukaryotic) |Caenorhabditis elegans, isoform 3 [TaxId: 6239]
d1qffa_ : (GLY500) (GLU533) [view usage] : f.4.3.3 |Transmembrane beta-barrels |Porins |Ligand-gated protein channel |Ferric hydroxamate uptake receptor FhuA |Escherichia coli [TaxId: 562]
d2o34a1 : (GLN4) (GLU32) [view usage] : d.96.2.2 |T-fold |ApbE-like |DVU1097-like |Hypothetical protein DVU1097 |Desulfovibrio vulgaris [TaxId: 881]
d1gsla_ : (GLN124) (ASN151) [view usage] : b.29.1.1 |Concanavalin A-like lectins/glucanases |Concanavalin A-like lectins/glucanases |Legume lectins |Legume lectin |West-central african legume (Griffonia simplicifolia) [TaxId: 3850]
d1kmpa_ : (LEU699) (PHE741) [view usage] : f.4.3.3 |Transmembrane beta-barrels |Porins |Ligand-gated protein channel |Outer membrane transporter FecA |Escherichia coli [TaxId: 562]
d2ccva1 : (ARG1) (PHE37) [view usage] : b.154.1.1 |HPA-like |Agglutinin HPA-like |Agglutinin HPA-like |Agglutinin HPA |Roman snail (Helix pomatia) [TaxId: 6536]
d1i5ea_ : (LEU48) (ILE67) [view usage] : c.61.1.1 |PRTase-like |PRTase-like |Phosphoribosyltransferases (PRTases) |Uracil PRTase, Upp |Bacillus caldolyticus [TaxId: 1394]
d3rhic_ : (PHE50) (LYS83) [view usage] : a.55.1.1 |IHF-like DNA-binding proteins |IHF-like DNA-binding proteins |Prokaryotic DNA-bending protein |automated matches |Bacillus anthracis [TaxId: 260799]
d1t77a2 : (SER2079) (SER2101) [view usage] : b.55.1.6 |PH domain-like barrel |PH domain-like |PreBEACH PH-like domain |Lipopolysaccharide-responsive and beige-like anchor protein LRBA |Human (Homo sapiens) [TaxId: 9606]
d3d5ka_ : (SER299) (PRO333) [view usage] : f.5.1.1 |Outer membrane efflux proteins (OEP) |Outer membrane efflux proteins (OEP) |Outer membrane efflux proteins (OEP) |Outer membrane protein OprM |Pseudomonas aeruginosa [TaxId: 287]
d2uyba_ : (PHE226) (ASP247) [view usage] : b.82.1.2 |Double-stranded beta-helix |RmlC-like cupins |Germin/Seed storage 7S protein |automated matches |Bacillus subtilis [TaxId: 1423]
d2ge3a1 : (GLY141) (PHE168) [view usage] : d.108.1.1 |Acyl-CoA N-acyltransferases (Nat) |Acyl-CoA N-acyltransferases (Nat) |N-acetyl transferase, NAT |Probable acetyltransferase Atu2290 |Agrobacterium tumefaciens [TaxId: 358]
d4ge1d_ : (GLY21) (ALA51) [view usage] : b.60.1.0 |Lipocalins |Lipocalins |automated matches |automated matches |Rhodnius prolixus [TaxId: 13249]
d1bdya_ : (PRO3) (THR37) [view usage] : b.7.1.1 |C2 domain-like |C2 domain (Calcium/lipid-binding domain, CaLB) |PLC-like (P variant) |Domain from protein kinase C delta |Norway rat (Rattus norvegicus) [TaxId: 10116]
d1p35a_ : (LYS276) (ASN296) [view usage] : b.28.1.1 |Baculovirus p35 protein |Baculovirus p35 protein |Baculovirus p35 protein |Baculovirus p35 protein |AcMNPV (Autographa californica nuclear polyhedrosis virus) [TaxId: 46015]
d1k24a_ : (TYR154) (GLY202) [view usage] : f.4.4.2 |Transmembrane beta-barrels |OMPT-like |Outer membrane adhesin/invasin OpcA |Outer membrane adhesin/invasin OpcA |Neisseria meningitidis [TaxId: 487]
d1h8fa_ : (SER35) (ASP58) [view usage] : d.144.1.7 |Protein kinase-like (PK-like) |Protein kinase-like (PK-like) |Protein kinases, catalytic subunit |Glycogen synthase kinase-3 beta (Gsk3b) |Human (Homo sapiens) [TaxId: 9606]
d3kcwa_ : (SER32) (SER55) [view usage] : b.1.21.1 |Immunoglobulin-like beta-sandwich |Fungal immunomodulatory protein, FIP |Fungal immunomodulatory protein, FIP |automated matches |Ganoderma microsporum [TaxId: 34462]
d2uyaa_ : (PHE226) (ASP247) [view usage] : b.82.1.2 |Double-stranded beta-helix |RmlC-like cupins |Germin/Seed storage 7S protein |automated matches |Bacillus subtilis [TaxId: 1423]
d2kl2a_ : (LEU93) (GLN111) [view usage] : d.269.1.1 |Gamma-glutamyl cyclotransferase-like |Gamma-glutamyl cyclotransferase-like |Gamma-glutamyl cyclotransferase-like |Hypothetical protein LOC223267 |Mouse (Mus musculus) [TaxId: 10090]
d1vhsa_ : (TRP139) (SER163) [view usage] : d.108.1.1 |Acyl-CoA N-acyltransferases (Nat) |Acyl-CoA N-acyltransferases (Nat) |N-acetyl transferase, NAT |Putative phosphinothricin acetyltransferase YwnH |Bacillus subtilis [TaxId: 1423]
d2o5ka1 : (SER35) (ASP58) [view usage] : d.144.1.7 |Protein kinase-like (PK-like) |Protein kinase-like (PK-like) |Protein kinases, catalytic subunit |Glycogen synthase kinase-3 beta (Gsk3b) |Human (Homo sapiens) [TaxId: 9606]
d3fiqb_ : (GLY14) (ASP46) [view usage] : b.60.1.0 |Lipocalins |Lipocalins |automated matches |automated matches |Norway rat (Rattus norvegicus) [TaxId: 10116]
d3ku3a_ : (PRO293) (THR318) [view usage] : b.19.1.2 |Viral protein domain |Viral protein domain |Influenza hemagglutinin headpiece |Hemagglutinin |Influenza A virus, different strains [TaxId: 11320]
d3pmzj_ : (LEU177) (PHE204) [view usage] : b.96.1.0 |Nicotinic receptor ligand binding domain-like |Nicotinic receptor ligand binding domain-like |automated matches |automated matches |California sea hare (Aplysia californica) [TaxId: 6500]
d3pnra_ : (GLY144) (GLY180) [view usage] : d.3.1.1 |Cysteine proteinases |Cysteine proteinases |Papain-like |Falcipain 2 |Malaria parasite (Plasmodium falciparum) [TaxId: 5833]
d3zvjc_ : (PRO10) (LEU27) [view usage] : c.47.1.0 |Thioredoxin fold |Thioredoxin-like |automated matches |automated matches |Blood fluke (Schistosoma mansoni) [TaxId: 6183]
d1duea_ : (VAL207) (GLY230) [view usage] : b.47.1.1 |Trypsin-like serine proteases |Trypsin-like serine proteases |Prokaryotic proteases |Epidermolytic (exfoliative) toxin A |Staphylococcus aureus [TaxId: 1280]
d1qaua_ : (GLY102) (PRO125) [view usage] : b.36.1.1 |PDZ domain-like |PDZ domain-like |PDZ domain |Neuronal nitric oxide synthase, NNOS |Norway rat (Rattus norvegicus) [TaxId: 10116]
d1jcha2 : (ASP175) (ILE196) [view usage] : b.110.1.1 |Cloacin translocation domain |Cloacin translocation domain |Cloacin translocation domain |Colicin E3 N-terminal domain |Escherichia coli [TaxId: 562]
d1uv5a_ : (LYS36) (ASP58) [view usage] : d.144.1.7 |Protein kinase-like (PK-like) |Protein kinase-like (PK-like) |Protein kinases, catalytic subunit |Glycogen synthase kinase-3 beta (Gsk3b) |Human (Homo sapiens) [TaxId: 9606]
d4cr0a_ : (PRO290) (THR315) [view usage] : b.19.1.2 |Viral protein domain |Viral protein domain |Influenza hemagglutinin headpiece |automated matches |Influenza a virus (a/vietnam/1194/2004(h5n1)) [TaxId: 644788]
List of distinct SCOP folds where this concept is used (in one or more of its domains):
b.82, b.19, d.58, b.29, b.47, f.4, d.144, c.37, c.47, b.60, b.18, d.3, d.96, b.1, d.108, b.96, b.125, b.62, c.61, b.55,
d.41, b.34, b.61, d.44, d.15, b.7, b.3, a.55, b.36, d.310, b.28, b.110, f.5, d.344, b.154, d.269, d.355