Tableau information
Concept source: d2qdna1 amino acid (a.a.) range (CYS52)(SER77)
nSSEs in this Concept: 3
String of secondary struct.elems. (SSEs) defining this concept: EEE
Each SSE's a.a.range: (start resi) (end resi) SSEtype (H=Helix; E=Strand) followed by a numeric SSE ID:
(CYS52) (LEU58) E1
(SER61) (THR66) E2
(VAL73) (SER77) E3
Orientation angles° of SSE-pairs; those in contact shown in bold font
E1
E2 159.0° E2
E3 18.1° -151.6°
Footnote: Inferred from this concept's usages (listed below) was the angular variance of 1σ = ±9.2° about each orientation angle shown above.
Loci of concept usages (shown as a range of a.a. residue ids) in SCOP(v2.05) domains, along with their brief legend taken from SCOP
d1poca_ : (THR103) (LYS133) [view usage] : a.133.1.1 |Phospholipase A2, PLA2 |Phospholipase A2, PLA2 |Insect phospholipase A2 |Phospholipase A2 |Honeybee (Apis mellifera) [TaxId: 7460]
d4hv4a2 : (THR149) (GLU177) [view usage] : c.72.2.0 |Ribokinase-like |MurD-like peptide ligases, catalytic domain |automated matches |automated matches |Yersinia pestis [TaxId: 214092]
d2mnga_ : (GLY638) (GLY659) [view usage] : b.82.3.2 |Double-stranded beta-helix |cAMP-binding domain-like |cAMP-binding domain |automated matches |Human (Homo sapiens) [TaxId: 9606]
d1tdha2 : (LYS54) (LEU87) [view usage] : b.113.1.1 |N-terminal domain of MutM-like DNA repair proteins |N-terminal domain of MutM-like DNA repair proteins |N-terminal domain of MutM-like DNA repair proteins |Endonuclease VIII-like 1 (NEIL1) |Human (Homo sapiens) [TaxId: 9606]
d4oita_ : (GLU83) (GLU107) [view usage] : b.78.1.0 |beta-Prism II |alpha-D-mannose-specific plant lectins |automated matches |automated matches |Mycobacterium smegmatis [TaxId: 246196]
d1yjma1 : (ARG9) (GLY34) [view usage] : b.26.1.2 |SMAD/FHA domain |SMAD/FHA domain |FHA domain |Polynucleotide kinase 3'-phosphatase |Mouse (Mus musculus) [TaxId: 10090]
d1c4pc_ : (SER221) (VAL245) [view usage] : d.15.5.1 |beta-Grasp (ubiquitin-like) |Staphylokinase/streptokinase |Staphylokinase/streptokinase |Streptokinase |Streptococcus equisimilis [TaxId: 119602]
d3ouna_ : (SER19) (GLY42) [view usage] : b.26.1.0 |SMAD/FHA domain |SMAD/FHA domain |automated matches |automated matches |Mycobacterium tuberculosis [TaxId: 1773]
d2okba_ : (MET11) (TYR38) [view usage] : b.85.4.1 |beta-clip |dUTPase-like |dUTPase-like |Deoxyuridine 5'-triphosphate nucleotidohydrolase (dUTPase) |Vaccinia virus [TaxId: 10245]
d1c76a_ : (ILE87) (LEU116) [view usage] : d.15.5.1 |beta-Grasp (ubiquitin-like) |Staphylokinase/streptokinase |Staphylokinase/streptokinase |Staphylokinase |Staphylococcus aureus [TaxId: 1280]
d3poaa_ : (THR4) (GLY28) [view usage] : b.26.1.0 |SMAD/FHA domain |SMAD/FHA domain |automated matches |automated matches |Mycobacterium tuberculosis [TaxId: 1773]
d1wlna1 : (LEU11) (GLY41) [view usage] : b.26.1.2 |SMAD/FHA domain |SMAD/FHA domain |FHA domain |Afadin |Mouse (Mus musculus) [TaxId: 10090]
d3nvsa_ : (GLY328) (PRO371) [view usage] : d.68.2.2 |IF3-like |EPT/RTPC-like |Enolpyruvate transferase, EPT |automated matches |Vibrio cholerae [TaxId: 666]
d2cswa1 : (GLY15) (GLY41) [view usage] : b.26.1.2 |SMAD/FHA domain |SMAD/FHA domain |FHA domain |Ubiquitin ligase protein RNF8 |Human (Homo sapiens) [TaxId: 9606]
d1c77a_ : (ILE87) (LEU116) [view usage] : d.15.5.1 |beta-Grasp (ubiquitin-like) |Staphylokinase/streptokinase |Staphylokinase/streptokinase |Staphylokinase |Staphylococcus aureus [TaxId: 1280]
d3gqsb_ : (SER3) (GLY30) [view usage] : b.26.1.0 |SMAD/FHA domain |SMAD/FHA domain |automated matches |automated matches |Chlamydia trachomatis [TaxId: 272561]
d1uhta_ : (SER12) (GLY38) [view usage] : b.26.1.2 |SMAD/FHA domain |SMAD/FHA domain |FHA domain |FHA domain containing protein At4G14490 |Thale cress (Arabidopsis thaliana) [TaxId: 3702]
d4av4a_ : (PHE1) (ASN23) [view usage] : b.2.3.2 |Common fold of diphtheria toxin/transcription factors/cytochrome f |Bacterial adhesins |Pilus subunits |automated matches |Escherichia coli [TaxId: 364106]
d1z45a1 : (GLY552) (ASP605) [view usage] : b.30.5.4 |Supersandwich |Galactose mutarotase-like |Aldose 1-epimerase (mutarotase) |Galactose mutarotase |Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
d3g6oa1 : (ALA28) (PRO55) [view usage] : d.110.3.9 |Profilin-like |PYP-like sensor domain (PAS domain) |BphP N-terminal domain-like |Bacteriophytochrome BphP |Pseudomonas aeruginosa [TaxId: 287]
d3jwnh1 : (PHE1) (TYR21) [view usage] : b.2.3.2 |Common fold of diphtheria toxin/transcription factors/cytochrome f |Bacterial adhesins |Pilus subunits |automated matches |Escherichia coli [TaxId: 488477]
d1xd5a_ : (GLY81) (THR108) [view usage] : b.78.1.1 |beta-Prism II |alpha-D-mannose-specific plant lectins |alpha-D-mannose-specific plant lectins |Gastrodianin (antifungal protein) |Gastrodia elata [TaxId: 91201]
d2uuxa_ : (LYS39) (GLY61) [view usage] : g.8.1.3 |BPTI-like |BPTI-like |Tick tryptase inhibitor-like |automated matches |Brown ear tick (Rhipicephalus appendiculatus) [TaxId: 34631]
d1lk9b_ : (LEU212) (ASP243) [view usage] : c.67.1.1 |PLP-dependent transferase-like |PLP-dependent transferases |AAT-like |Alliinase |Garlic (Allium sativum) [TaxId: 4682]
d1j6ua3 : (THR132) (LEU158) [view usage] : c.72.2.1 |Ribokinase-like |MurD-like peptide ligases, catalytic domain |MurCDEF |UDP-N-acetylmuramate-alanine ligase MurC |Thermotoga maritima [TaxId: 2336]
d1xova1 : (ASP190) (LEU215) [view usage] : b.34.11.4 |SH3-like barrel |Prokaryotic SH3-related domain |Ply C-terminal domain-like |Endolysin Ply, C-terminal domain |Bacteriophage Psa [TaxId: 171618]
d1xd5c_ : (GLY81) (THR108) [view usage] : b.78.1.1 |beta-Prism II |alpha-D-mannose-specific plant lectins |alpha-D-mannose-specific plant lectins |Gastrodianin (antifungal protein) |Gastrodia elata [TaxId: 91201]
d1vi4a_ : (ASP143) (GLU163) [view usage] : c.8.7.1 |The "swivelling" beta/beta/alpha domain |RraA-like |RraA-like |Hypothetical protein VC2366 |Vibrio cholerae [TaxId: 666]
d2lbaa_ : (ASN45) (MET74) [view usage] : b.60.1.0 |Lipocalins |Lipocalins |automated matches |automated matches |Chicken (Gallus gallus) [TaxId: 9031]
d2bdwb_ : (LEU19) (ALA40) [view usage] : d.144.1.0 |Protein kinase-like (PK-like) |Protein kinase-like (PK-like) |automated matches |automated matches |Nematode (Caenorhabditis elegans) [TaxId: 6239]
d1kiub1 : (PHE1) (ASN23) [view usage] : b.2.3.2 |Common fold of diphtheria toxin/transcription factors/cytochrome f |Bacterial adhesins |Pilus subunits |Mannose-specific adhesin FimH |Escherichia coli [TaxId: 562]
d1kiub1 : (SER72) (SER97) [view usage] : b.2.3.2 |Common fold of diphtheria toxin/transcription factors/cytochrome f |Bacterial adhesins |Pilus subunits |Mannose-specific adhesin FimH |Escherichia coli [TaxId: 562]
d4ixlb_ : (GLY8) (LEU29) [view usage] : b.29.1.11 |Concanavalin A-like lectins/glucanases |Concanavalin A-like lectins/glucanases |Xylanase/endoglucanase 11/12 |automated matches |Bacillus sp [TaxId: 1409]
d1p31a3 : (THR148) (GLU176) [view usage] : c.72.2.1 |Ribokinase-like |MurD-like peptide ligases, catalytic domain |MurCDEF |UDP-N-acetylmuramate-alanine ligase MurC |Haemophilus influenzae [TaxId: 727]
d1uwva2 : (MSE246) (ASN267) [view usage] : c.66.1.40 |S-adenosyl-L-methionine-dependent methyltransferases |S-adenosyl-L-methionine-dependent methyltransferases |(Uracil-5-)-methyltransferase |rRNA (Uracil-5-)-methyltransferase RumA, catalytic domain |Escherichia coli [TaxId: 562]
d3po8a_ : (GLY3) (GLY28) [view usage] : b.26.1.0 |SMAD/FHA domain |SMAD/FHA domain |automated matches |automated matches |Mycobacterium tuberculosis [TaxId: 1773]
d1gqyb3 : (THR148) (GLU176) [view usage] : c.72.2.1 |Ribokinase-like |MurD-like peptide ligases, catalytic domain |MurCDEF |UDP-N-acetylmuramate-alanine ligase MurC |Haemophilus influenzae [TaxId: 727]
d2saka_ : (ILE87) (LEU116) [view usage] : d.15.5.1 |beta-Grasp (ubiquitin-like) |Staphylokinase/streptokinase |Staphylokinase/streptokinase |Staphylokinase |Staphylococcus aureus [TaxId: 1280]
d2q8oa1 : (CYS52) (SER77) [view usage] : b.22.1.1 |TNF-like |TNF-like |TNF-like |Glucocorticoid-induced TNF-related ligand, TNFSF18 |Mouse (Mus musculus) [TaxId: 10090]
d2okdb_ : (VAL10) (TYR38) [view usage] : b.85.4.1 |beta-clip |dUTPase-like |dUTPase-like |Deoxyuridine 5'-triphosphate nucleotidohydrolase (dUTPase) |Vaccinia virus [TaxId: 10245]
d1g6ea_ : (TYR12) (GLY38) [view usage] : b.11.1.6 |gamma-Crystallin-like |gamma-Crystallin-like |Antifungal protein AFP1 |Antifungal protein AFP1 |Streptomyces tendae, tu901 [TaxId: 1932]
d4bcta_ : (THR104) (PRO135) [view usage] : b.25.1.1 |Osmotin, thaumatin-like protein |Osmotin, thaumatin-like protein |Osmotin, thaumatin-like protein |automated matches |Actinidia deliciosa [TaxId: 3627]
d1m1ga2 : (GLU216) (GLU239) [view usage] : b.34.5.4 |SH3-like barrel |Translation proteins SH3-like domain |N-utilization substance G protein NusG, C-terminal domain |N-utilization substance G protein NusG, C-terminal domain |Aquifex aeolicus [TaxId: 63363]
d1feua_ : (ARG72) (MET98) [view usage] : b.53.1.1 |Ribosomal protein L25-like |Ribosomal protein L25-like |Ribosomal protein L25-like |Ribosomal protein TL5 (general stress protein CTC) |Thermus thermophilus [TaxId: 274]
List of distinct SCOP folds where this concept is used (in one or more of its domains):
b.82, c.67, d.68, b.29, b.30, c.66, c.72, d.144, b.60, b.2, b.85, d.110, c.8, b.26, b.22, b.25, b.34, b.11, b.113, d.15,
a.133, g.8, b.78, b.53