Tableau information
Concept source: d2pu9b_ amino acid (a.a.) range (PRO52)(GLU74)
nSSEs in this Concept: 3
String of secondary struct.elems. (SSEs) defining this concept: EEE
Each SSE's a.a.range: (start resi) (end resi) SSEtype (H=Helix; E=Strand) followed by a numeric SSE ID:
(PRO52) (GLU58) E1
(ARG60) (ARG66) E2
(GLU69) (GLU74) E3
Orientation angles° of SSE-pairs; those in contact shown in bold font
E1
E2 150.5° E2
E3 62.5° -114.2°
Footnote: Inferred from this concept's usages (listed below) was the angular variance of 1σ = ±8.8° about each orientation angle shown above.
Loci of concept usages (shown as a range of a.a. residue ids) in SCOP(v2.05) domains, along with their brief legend taken from SCOP
d2f2wa_ : (TRP42) (ASP62) [view usage] : b.34.2.1 |SH3-like barrel |SH3-domain |SH3-domain |alpha-Spectrin, SH3 domain |Chicken (Gallus gallus) [TaxId: 9031]
d3m0ra_ : (TRP42) (ASP62) [view usage] : b.34.2.1 |SH3-like barrel |SH3-domain |SH3-domain |alpha-Spectrin, SH3 domain |Chicken (Gallus gallus) [TaxId: 9031]
d4iqfa2 : (VAL233) (LYS255) [view usage] : b.46.1.0 |FMT C-terminal domain-like |FMT C-terminal domain-like |automated matches |automated matches |Anthrax bacillus (Bacillus anthracis) [TaxId: 1392]
d1hava_ : (GLU139) (LYS164) [view usage] : b.47.1.4 |Trypsin-like serine proteases |Trypsin-like serine proteases |Viral cysteine protease of trypsin fold |3C cysteine protease (picornain 3C) |Human hepatitis A virus [TaxId: 208726]
d1k76a_ : (TRP40) (SER61) [view usage] : b.34.2.1 |SH3-like barrel |SH3-domain |SH3-domain |Growth factor receptor-bound protein 2 (GRB2), N- and C-terminal domains |Caenorhabditis elegans, SEM-5 [TaxId: 6239]
d1tdha2 : (HIS98) (GLY126) [view usage] : b.113.1.1 |N-terminal domain of MutM-like DNA repair proteins |N-terminal domain of MutM-like DNA repair proteins |N-terminal domain of MutM-like DNA repair proteins |Endonuclease VIII-like 1 (NEIL1) |Human (Homo sapiens) [TaxId: 9606]
d3c9xa_ : (PRO149) (THR172) [view usage] : b.50.1.0 |Acid proteases |Acid proteases |automated matches |automated matches |Trichoderma reesei [TaxId: 51453]
d2pu9b_ : (PRO52) (GLU74) [view usage] : b.34.4.3 |SH3-like barrel |Electron transport accessory proteins |Ferredoxin thioredoxin reductase (FTR), alpha (variable) chain |Ferredoxin thioredoxin reductase (FTR), alpha (variable) chain |Synechocystis sp. [TaxId: 1143]
d1vyna_ : (LEU97) (GLU120) [view usage] : b.34.14.1 |SH3-like barrel |PAZ domain |PAZ domain |Argonaute 2 |Fruit fly (Drosophila melanogaster) [TaxId: 7227]
d2ywda_ : (SER118) (ARG143) [view usage] : c.23.16.1 |Flavodoxin-like |Class I glutamine amidotransferase-like |Class I glutamine amidotransferases (GAT) |Hypothetical protein YaaE |Thermus thermophilus HB8 [TaxId: 300852]
d4uo4a_ : (ALA21) (VAL43) [view usage] : b.19.1.2 |Viral protein domain |Viral protein domain |Influenza hemagglutinin headpiece |automated matches |Influenza A virus [TaxId: 11320]
d2dlma_ : (ASN41) (VAL61) [view usage] : b.34.2.0 |SH3-like barrel |SH3-domain |automated matches |automated matches |Human (Homo sapiens) [TaxId: 9606]
d4k9za_ : (PHE30) (TRP55) [view usage] : c.47.1.0 |Thioredoxin fold |Thioredoxin-like |automated matches |automated matches |Bacteroides vulgatus [TaxId: 435590]
d4txoe_ : (ASP77) (TRP103) [view usage] : c.47.1.10 |Thioredoxin fold |Thioredoxin-like |Glutathione peroxidase-like |automated matches |Bradyrhizobium diazoefficiens [TaxId: 224911]
d1jfub_ : (ASP42) (TRP68) [view usage] : c.47.1.10 |Thioredoxin fold |Thioredoxin-like |Glutathione peroxidase-like |Membrane-anchored thioredoxin-like protein TlpA, soluble domain |Bradyrhizobium japonicum [TaxId: 375]
d4unwa_ : (ALA21) (VAL43) [view usage] : b.19.1.2 |Viral protein domain |Viral protein domain |Influenza hemagglutinin headpiece |automated matches |Influenza a virus (a/eq/newmarket/93/(h3n8)) [TaxId: 159470]
d1jqqb_ : (ASP54) (ARG78) [view usage] : b.34.2.1 |SH3-like barrel |SH3-domain |SH3-domain |Peroxisomal membrane protein Pex13p |Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
d4uo3c_ : (ALA21) (GLY49) [view usage] : b.19.1.2 |Viral protein domain |Viral protein domain |Influenza hemagglutinin headpiece |automated matches |Influenza a virus [TaxId: 560387]
d3j38v_ : (LEU11) (VAL37) [view usage] : i.1.1.1 |Ribosome and ribosomal fragments |Ribosome and ribosomal fragments |Ribosome complexes |Eukaryotic, cytoplasmic (80S ribosome functional complex) |Drosophila melanogaster [TaxId: 7227]
d4c9fb_ : (ASP293) (THR323) [view usage] : d.169.1.0 |C-type lectin-like |C-type lectin-like |automated matches |automated matches |Mouse (Mus musculus) [TaxId: 10090]
d4ka0b_ : (GLY24) (TRP55) [view usage] : c.47.1.0 |Thioredoxin fold |Thioredoxin-like |automated matches |automated matches |Bacteroides vulgatus [TaxId: 435590]
d1r6zz1 : (LEU694) (GLN719) [view usage] : b.34.14.1 |SH3-like barrel |PAZ domain |PAZ domain |Argonaute 2 |Fruit fly (Drosophila melanogaster) [TaxId: 7227]
d3nahb_ : (SER286) (GLY304) [view usage] : e.8.1.4 |DNA/RNA polymerases |DNA/RNA polymerases |RNA-dependent RNA-polymerase |automated matches |Murine norovirus 1 [TaxId: 223997]
d1jdea2 : (LYS481) (ASP499) [view usage] : c.8.1.1 |The "swivelling" beta/beta/alpha domain |Phosphohistidine domain |Pyruvate phosphate dikinase, central domain |Pyruvate phosphate dikinase, central domain |Clostridium symbiosum [TaxId: 1512]
d2f8sa1 : (LYS238) (THR260) [view usage] : b.34.14.1 |SH3-like barrel |PAZ domain |PAZ domain |automated matches |Aquifex aeolicus [TaxId: 63363]
d4unwc_ : (ALA21) (VAL43) [view usage] : b.19.1.2 |Viral protein domain |Viral protein domain |Influenza hemagglutinin headpiece |automated matches |Influenza a virus (a/eq/newmarket/93/(h3n8)) [TaxId: 159470]
d2d8ra1 : (MET8) (ARG31) [view usage] : g.39.1.16 |Glucocorticoid receptor-like (DNA-binding domain) |Glucocorticoid receptor-like (DNA-binding domain) |THAP domain |THAP domain-containing protein 2 |Human (Homo sapiens) [TaxId: 9606]
d4grfa_ : (PRO258) (TRP285) [view usage] : c.47.1.0 |Thioredoxin fold |Thioredoxin-like |automated matches |automated matches |Bacteroides vulgatus [TaxId: 435590]
d1rjha_ : (LYS148) (PHE178) [view usage] : d.169.1.1 |C-type lectin-like |C-type lectin-like |C-type lectin domain |Tetranectin |Human (Homo sapiens) [TaxId: 9606]
d2heqa1 : (TYR49) (GLY71) [view usage] : b.34.20.1 |SH3-like barrel |YorP-like |YorP-like |Uncharacterized protein YorP |Bacillus subtilis [TaxId: 1423]
d2lrna_ : (PRO10) (TRP37) [view usage] : c.47.1.0 |Thioredoxin fold |Thioredoxin-like |automated matches |automated matches |Bacteroides sp. [TaxId: 457394]
d4uo3a_ : (ALA21) (GLY49) [view usage] : b.19.1.2 |Viral protein domain |Viral protein domain |Influenza hemagglutinin headpiece |automated matches |Influenza a virus [TaxId: 560387]
d2jtga_ : (VAL2) (LYS24) [view usage] : g.39.1.0 |Glucocorticoid receptor-like (DNA-binding domain) |Glucocorticoid receptor-like (DNA-binding domain) |automated matches |automated matches |Human (Homo sapiens) [TaxId: 9606]
d1xuua2 : (ASN5) (ILE26) [view usage] : c.1.10.6 |TIM beta/alpha-barrel |Aldolase |NeuB-like |Capsule biosynthesis protein SiaC, N-terminal domain |Neisseria meningitidis [TaxId: 487]
d1rzma_ : (ASP80) (GLY100) [view usage] : c.1.10.4 |TIM beta/alpha-barrel |Aldolase |Class I DAHP synthetase |3-deoxy-D-arabino-heptulosonate-7-phosphate synthase (DAHP synthase, AroG) |Thermotoga maritima [TaxId: 2336]
d1feud_ : (ARG72) (PHE104) [view usage] : b.53.1.1 |Ribosomal protein L25-like |Ribosomal protein L25-like |Ribosomal protein L25-like |Ribosomal protein TL5 (general stress protein CTC) |Thermus thermophilus [TaxId: 274]
d3htna_ : (GLY89) (SER115) [view usage] : d.290.1.0 |AF0104/ALDC/Ptd012-like |AF0104/ALDC/Ptd012-like |automated matches |automated matches |Bacteroides thetaiotaomicron [TaxId: 226186]
d1iawa_ : (GLN287) (ARG313) [view usage] : c.52.1.9 |Restriction endonuclease-like |Restriction endonuclease-like |Restriction endonuclease NaeI |Restriction endonuclease NaeI |Nocardia aerocolonigenes [TaxId: 68170]
d1abrb2 : (ASP235) (PHE267) [view usage] : b.42.2.1 |beta-Trefoil |Ricin B-like lectins |Ricin B-like |Plant cytotoxin B-chain (lectin) |Abrus precatorius [TaxId: 3816]
d2f9sa_ : (SER40) (TRP70) [view usage] : c.47.1.10 |Thioredoxin fold |Thioredoxin-like |Glutathione peroxidase-like |Thiol-disulfide oxidoreductase ResA |Bacillus subtilis [TaxId: 1423]
d1ha0a1 : (PRO21) (GLY49) [view usage] : b.19.1.2 |Viral protein domain |Viral protein domain |Influenza hemagglutinin headpiece |Hemagglutinin |Influenza A virus, different strains [TaxId: 11320]
d2rfta_ : (PRO13) (LYS38) [view usage] : b.19.1.2 |Viral protein domain |Viral protein domain |Influenza hemagglutinin headpiece |Hemagglutinin |Influenza b virus (strain b/hong kong/8/73) [TaxId: 11531]
d2kkia_ : (ILE132) (ALA159) [view usage] : b.42.1.2 |beta-Trefoil |Cytokine |Interleukin-1 (IL-1) |automated matches |Human (Homo sapiens) [TaxId: 9606]
d3kcmd_ : (PRO132) (ASP154) [view usage] : c.47.1.0 |Thioredoxin fold |Thioredoxin-like |automated matches |automated matches |Geobacter metallireducens [TaxId: 269799]
d2wrhh_ : (ASP18) (LEU37) [view usage] : b.19.1.2 |Viral protein domain |Viral protein domain |Influenza hemagglutinin headpiece |automated matches |Influenza a virus (a/mallard/alberta/35/1976(h1n1)) [TaxId: 352520]
d4bsga_ : (SER11) (VAL33) [view usage] : b.19.1.0 |Viral protein domain |Viral protein domain |automated matches |automated matches |Influenza a (virus a/turkey/italy/214845/2002 (h7n3)) [TaxId: 265120]
d1yaga1 : (ALA7) (PRO38) [view usage] : c.55.1.1 |Ribonuclease H-like motif |Actin-like ATPase domain |Actin/HSP70 |Actin |Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
d1hgda_ : (PRO21) (GLY49) [view usage] : b.19.1.2 |Viral protein domain |Viral protein domain |Influenza hemagglutinin headpiece |Hemagglutinin |Influenza A virus, different strains [TaxId: 11320]
d2m5ta_ : (ASP75) (GLU97) [view usage] : b.47.1.4 |Trypsin-like serine proteases |Trypsin-like serine proteases |Viral cysteine protease of trypsin fold |automated matches |Rhinovirus c [TaxId: 463676]
d4nrka_ : (PRO13) (ARG38) [view usage] : b.19.1.2 |Viral protein domain |Viral protein domain |Influenza hemagglutinin headpiece |Hemagglutinin |Influenza b virus
d1i0cb_ : (GLN39) (THR63) [view usage] : b.34.2.1 |SH3-like barrel |SH3-domain |SH3-domain |EPS8 SH3 domain |Mouse (Mus musculus) [TaxId: 10090]
d1xova1 : (LEU262) (ASN291) [view usage] : b.34.11.4 |SH3-like barrel |Prokaryotic SH3-related domain |Ply C-terminal domain-like |Endolysin Ply, C-terminal domain |Bacteriophage Psa [TaxId: 171618]
d3eyja_ : (GLU21) (ASP49) [view usage] : b.19.1.2 |Viral protein domain |Viral protein domain |Influenza hemagglutinin headpiece |automated matches |Influenza A virus [TaxId: 11320]
d1huja_ : (ASN92) (THR131) [view usage] : b.40.5.1 |OB-fold |Inorganic pyrophosphatase |Inorganic pyrophosphatase |Inorganic pyrophosphatase |Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
d4unze_ : (ALA21) (VAL43) [view usage] : b.19.1.2 |Viral protein domain |Viral protein domain |Influenza hemagglutinin headpiece |automated matches |Influenza a virus (a/eq/newmarket/93/(h3n8)) [TaxId: 159470]
d4iqfb2 : (VAL233) (PRO252) [view usage] : b.46.1.0 |FMT C-terminal domain-like |FMT C-terminal domain-like |automated matches |automated matches |Anthrax bacillus (Bacillus anthracis) [TaxId: 1392]
d1rzob2 : (GLY2230) (PHE2262) [view usage] : b.42.2.1 |beta-Trefoil |Ricin B-like lectins |Ricin B-like |Plant cytotoxin B-chain (lectin) |Castor bean (Ricinus communis), Ricin [TaxId: 3988]
d4uoaa_ : (ALA21) (VAL43) [view usage] : b.19.1.2 |Viral protein domain |Viral protein domain |Influenza hemagglutinin headpiece |automated matches |Influenza a virus (a/canine/colorado/17864/2006(h3n8)) [TaxId: 867285]
d4uo0e_ : (ALA21) (VAL43) [view usage] : b.19.1.2 |Viral protein domain |Viral protein domain |Influenza hemagglutinin headpiece |automated matches |Influenza a virus (a/equine/richmond/1/2007)(h3n8)) [TaxId: 560387]
d3j39e_ : (GLY122) (SER149) [view usage] : i.1.1.1 |Ribosome and ribosomal fragments |Ribosome and ribosomal fragments |Ribosome complexes |Eukaryotic, cytoplasmic (80S ribosome functional complex) |Drosophila melanogaster [TaxId: 7227]
d1tota1 : (PHE5) (VAL24) [view usage] : g.44.1.6 |RING/U-box |RING/U-box |ZZ domain |CREB-binding protein, CBP |Mouse (Mus musculus) [TaxId: 10090]
d2aaib2 : (GLY230) (PHE262) [view usage] : b.42.2.1 |beta-Trefoil |Ricin B-like lectins |Ricin B-like |Plant cytotoxin B-chain (lectin) |Castor bean (Ricinus communis), Ricin [TaxId: 3988]
d2hgaa1 : (GLY26) (SER57) [view usage] : b.36.1.6 |PDZ domain-like |PDZ domain-like |MTH1368 C-terminal domain-like |Uncharacterized protein MTH1368 |Methanobacterium thermoautotrophicum [TaxId: 145262]
d1n0ua1 : (GLN432) (ALA450) [view usage] : b.43.3.1 |Reductase/isomerase/elongation factor common domain |Translation proteins |Elongation factors |Elongation factor 2 (eEF-2), domain II |Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
d3zvjd_ : (PRO10) (PRO41) [view usage] : c.47.1.0 |Thioredoxin fold |Thioredoxin-like |automated matches |automated matches |Blood fluke (Schistosoma mansoni) [TaxId: 6183]
d3naha_ : (SER286) (GLY304) [view usage] : e.8.1.4 |DNA/RNA polymerases |DNA/RNA polymerases |RNA-dependent RNA-polymerase |automated matches |Murine norovirus 1 [TaxId: 223997]
d1ntha_ : (LYS100) (GLY129) [view usage] : c.1.25.1 |TIM beta/alpha-barrel |Monomethylamine methyltransferase MtmB |Monomethylamine methyltransferase MtmB |Monomethylamine methyltransferase MtmB |Methanosarcina barkeri [TaxId: 2208]
d3j3az2 : (GLN448) (CYS466) [view usage] : b.43.3.1 |Reductase/isomerase/elongation factor common domain |Translation proteins |Elongation factors |Elongation factor 2 (eEF-2), domain II |Homo sapiens [TaxId: 9606]
d2d6fa1 : (ARG45) (LEU68) [view usage] : b.38.3.1 |Sm-like fold |GatD N-terminal domain-like |GatD N-terminal domain-like |Glutamyl-tRNA(Gln) amidotransferase subunit D, GatD |Methanobacterium thermoautotrophicum [TaxId: 145262]
d4nrja_ : (PRO13) (ARG38) [view usage] : b.19.1.2 |Viral protein domain |Viral protein domain |Influenza hemagglutinin headpiece |Hemagglutinin |Influenza b virus
d3qida_ : (SER286) (GLY304) [view usage] : e.8.1.4 |DNA/RNA polymerases |DNA/RNA polymerases |RNA-dependent RNA-polymerase |automated matches |Murine norovirus 1 [TaxId: 223997]
d2aneh_ : (ARG8) (ARG33) [view usage] : b.122.1.10 |PUA domain-like |PUA domain-like |LON domain-like |ATP-dependent protease La (Lon), N-terminal domain |Escherichia coli [TaxId: 562]
d4nmub_ : (PRO13) (TRP40) [view usage] : c.47.1.0 |Thioredoxin fold |Thioredoxin-like |automated matches |automated matches |Anthrax bacillus (Bacillus anthracis) [TaxId: 1392]
d4ka0a_ : (GLN25) (TRP55) [view usage] : c.47.1.0 |Thioredoxin fold |Thioredoxin-like |automated matches |automated matches |Bacteroides vulgatus [TaxId: 435590]
d4hr6c2 : (GLN231) (TYR264) [view usage] : b.42.2.0 |beta-Trefoil |Ricin B-like lectins |automated matches |automated matches |Trichosanthes anguina [TaxId: 50544]
d3hmga_ : (PRO21) (GLY49) [view usage] : b.19.1.2 |Viral protein domain |Viral protein domain |Influenza hemagglutinin headpiece |Hemagglutinin |Influenza A virus, different strains [TaxId: 11320]
d4unya_ : (ALA21) (VAL43) [view usage] : b.19.1.2 |Viral protein domain |Viral protein domain |Influenza hemagglutinin headpiece |automated matches |Influenza a virus (a/canine/colorado/17864/2006(h3n8)) [TaxId: 867285]
List of distinct SCOP folds where this concept is used (in one or more of its domains):
e.8, c.1, b.19, i.1, b.47, b.50, c.23, b.40, c.47, c.55, d.169, b.122, b.42, c.8, c.52, b.34, b.113, b.38, b.43, b.36,
d.290, g.39, g.44, b.53, b.46