Tableau information
Concept source: d2g81i1 amino acid (a.a.) range (GLN31)(ILE64)
nSSEs in this Concept: 3
String of secondary struct.elems. (SSEs) defining this concept: EEE
Each SSE's a.a.range: (start resi) (end resi) SSEtype (H=Helix; E=Strand) followed by a numeric SSE ID:
(GLN31) (VAL37) E1
(LYS47) (THR52) E2
(GLN58) (ILE64) E3
Orientation angles° of SSE-pairs; those in contact shown in bold font
E1
E2 -41.3° E2
E3 175.7° 143.0°
Footnote: Inferred from this concept's usages (listed below) was the angular variance of 1σ = ±12.7° about each orientation angle shown above.
Loci of concept usages (shown as a range of a.a. residue ids) in SCOP(v2.05) domains, along with their brief legend taken from SCOP
d3puca_ : (GLY1) (GLU33) [view usage] : b.1.1.0 |Immunoglobulin-like beta-sandwich |Immunoglobulin |automated matches |automated matches |Human (Homo sapiens) [TaxId: 9606]
d1xbpq1 : (ASP88) (GLU130) [view usage] : d.55.1.1 |Ribosomal protein L22 |Ribosomal protein L22 |Ribosomal protein L22 |Ribosomal protein L22 |Deinococcus radiodurans [TaxId: 1299]
d1hd8a1 : (PHE263) (VAL292) [view usage] : b.105.1.1 |Penicillin-binding protein associated domain |Penicillin-binding protein associated domain |PBP5 C-terminal domain-like |Penicillin-binding protein 5, C-terminal domain |Escherichia coli [TaxId: 562]
d1nj4a1 : (PHE263) (VAL292) [view usage] : b.105.1.1 |Penicillin-binding protein associated domain |Penicillin-binding protein associated domain |PBP5 C-terminal domain-like |Penicillin-binding protein 5, C-terminal domain |Escherichia coli [TaxId: 562]
d1euta2 : (ARG508) (ASP557) [view usage] : b.18.1.1 |Galactose-binding domain-like |Galactose-binding domain-like |Galactose-binding domain |Sialidase, C-terminal domain |Micromonospora viridifaciens [TaxId: 1881]
d1rkib_ : (ASP71) (VAL97) [view usage] : d.308.1.2 |THUMP domain |THUMP domain-like |PAE0736-like |Hypothetical protein PAE0736 |Pyrobaculum aerophilum [TaxId: 13773]
d2x4da_ : (LYS147) (GLY170) [view usage] : c.108.1.0 |HAD-like |HAD-like |automated matches |automated matches |Human (Homo sapiens) [TaxId: 9606]
d2ozka1 : (GLY140) (ASP183) [view usage] : c.66.1.48 |S-adenosyl-L-methionine-dependent methyltransferases |S-adenosyl-L-methionine-dependent methyltransferases |Nsp15 N-terminal domain-like |Nsp15 |SARS coronavirus [TaxId: 227859]
d2vn5a_ : (LYS117) (PRO152) [view usage] : b.2.2.2 |Common fold of diphtheria toxin/transcription factors/cytochrome f |Carbohydrate-binding domain |Cellulose-binding domain family III |Cohesin domain |Clostridium cellulolyticum [TaxId: 1521]
d2h0va_ : (PRO15) (MSE36) [view usage] : b.82.1.5 |Double-stranded beta-helix |RmlC-like cupins |Quercetin 2,3-dioxygenase-like |automated matches |Bacillus subtilis [TaxId: 1423]
d2h0va_ : (PRO187) (VAL208) [view usage] : b.82.1.5 |Double-stranded beta-helix |RmlC-like cupins |Quercetin 2,3-dioxygenase-like |automated matches |Bacillus subtilis [TaxId: 1423]
d1ffko_ : (LYS112) (GLU149) [view usage] : d.55.1.1 |Ribosomal protein L22 |Ribosomal protein L22 |Ribosomal protein L22 |Ribosomal protein L22 |Haloarcula marismortui [TaxId: 2238]
d1nwba_ : (GLU30) (PHE52) [view usage] : b.124.1.1 |HesB-like domain |HesB-like domain |HesB-like domain |Hypothetical protein Aq_1857 |Aquifex aeolicus [TaxId: 63363]
d2vn6a_ : (LYS117) (ASP151) [view usage] : b.2.2.2 |Common fold of diphtheria toxin/transcription factors/cytochrome f |Carbohydrate-binding domain |Cellulose-binding domain family III |Cohesin domain |Clostridium cellulolyticum [TaxId: 1521]
d1c4pa_ : (GLN239) (LYS278) [view usage] : d.15.5.1 |beta-Grasp (ubiquitin-like) |Staphylokinase/streptokinase |Staphylokinase/streptokinase |Streptokinase |Streptococcus equisimilis [TaxId: 119602]
d1bs9a_ : (LYS126) (CYS171) [view usage] : c.69.1.30 |alpha/beta-Hydrolases |alpha/beta-Hydrolases |Cutinase-like |Acetylxylan esterase |Penicillium purpurogenum [TaxId: 28575]
d3c6la2 : (GLY152) (ASN178) [view usage] : b.1.1.2 |Immunoglobulin-like beta-sandwich |Immunoglobulin |C1 set domains (antibody constant domain-like) |T-cell antigen receptor |Mouse (Mus musculus), alpha-chain [TaxId: 10090]
d2k3ga_ : (GLY28) (ASN56) [view usage] : g.7.1.3 |Snake toxin-like |Snake toxin-like |Extracellular domain of cell surface receptors |BMP receptor Ia ectodomain |Human (Homo sapiens) [TaxId: 9606]
d1teja_ : (CYS29) (ILE53) [view usage] : g.20.1.1 |Blood coagulation inhibitor (disintegrin) |Blood coagulation inhibitor (disintegrin) |Blood coagulation inhibitor (disintegrin) |Schistatin |Saw-scaled viper (Echis carinatus), different isoforms [TaxId: 40353]
d4m56b2 : (ARG530) (ILE559) [view usage] : b.71.1.0 |Glycosyl hydrolase domain |Glycosyl hydrolase domain |automated matches |automated matches |Bacillus subtilis [TaxId: 224308]
d1vrma1 : (ALA256) (HIS276) [view usage] : d.96.2.1 |T-fold |ApbE-like |ApbE-like |Hypothetical protein TM1553 |Thermotoga maritima [TaxId: 2336]
d1y3ta1 : (PRO15) (MET36) [view usage] : b.82.1.5 |Double-stranded beta-helix |RmlC-like cupins |Quercetin 2,3-dioxygenase-like |Hypothetical protein YxaG |Bacillus subtilis [TaxId: 1423]
d1y3ta1 : (PRO187) (VAL208) [view usage] : b.82.1.5 |Double-stranded beta-helix |RmlC-like cupins |Quercetin 2,3-dioxygenase-like |Hypothetical protein YxaG |Bacillus subtilis [TaxId: 1423]
d1ylld_ : (GLU3) (ALA28) [view usage] : b.82.1.17 |Double-stranded beta-helix |RmlC-like cupins |PA5104-like |automated matches |Pseudomonas aeruginosa [TaxId: 208964]
d3n41f1 : (PRO58) (GLU109) [view usage] : f.10.1.1 |Viral glycoprotein, central and dimerisation domains |Viral glycoprotein, central and dimerisation domains |Viral glycoprotein, central and dimerisation domains |automated matches |Chikungunya virus [TaxId: 37124]
d4a17q_ : (GLN117) (GLU154) [view usage] : i.1.1.2 |Ribosome and ribosomal fragments |Ribosome and ribosomal fragments |Large subunit |Eukaryotic, cytoplasmic (60S subunit) |Tetrahymena thermophila [TaxId: 5911]
d1fcpa_ : (GLY682) (PHE723) [view usage] : f.4.3.3 |Transmembrane beta-barrels |Porins |Ligand-gated protein channel |Ferric hydroxamate uptake receptor FhuA |Escherichia coli [TaxId: 562]
d1qffa_ : (ALA688) (PHE725) [view usage] : f.4.3.3 |Transmembrane beta-barrels |Porins |Ligand-gated protein channel |Ferric hydroxamate uptake receptor FhuA |Escherichia coli [TaxId: 562]
d2ghqa_ : (VAL102) (LYS131) [view usage] : c.108.1.16 |HAD-like |HAD-like |NLI interacting factor-like phosphatase |automated matches |Human (Homo sapiens) [TaxId: 9606]
d2hr9a_ : (MET35) (VAL70) [view usage] : b.88.1.2 |Mss4-like |Mss4-like |Translationally controlled tumor protein TCTP (histamine-releasing factor) |Translationally controlled tumor protein TCTP (histamine-releasing factor) |Human (Homo sapiens) [TaxId: 9606]
d1rkia1 : (ASP71) (ARG96) [view usage] : d.308.1.2 |THUMP domain |THUMP domain-like |PAE0736-like |Hypothetical protein PAE0736 |Pyrobaculum aerophilum [TaxId: 13773]
d1usra_ : (LYS539) (GLU564) [view usage] : b.68.1.1 |6-bladed beta-propeller |Sialidases |Sialidases (neuraminidases) |Paramyxovirus hemagglutinin-neuraminidase head domain |Newcastle disease virus [TaxId: 11176]
d1hdfa_ : (SER1) (GLY32) [view usage] : b.11.1.1 |gamma-Crystallin-like |gamma-Crystallin-like |Crystallins/Ca-binding development proteins |Spherulin 3a (S3a) |Slime mold (Physarum polycephalum) [TaxId: 5791]
d2btqa1 : (GLY37) (PRO66) [view usage] : c.32.1.1 |Tubulin nucleotide-binding domain-like |Tubulin nucleotide-binding domain-like |Tubulin, GTPase domain |Tubulin alpha-subunit |Prosthecobacter dejongeii [TaxId: 48465]
d2l8aa_ : (THR477) (THR496) [view usage] : b.2.2.0 |Common fold of diphtheria toxin/transcription factors/cytochrome f |Carbohydrate-binding domain |automated matches |automated matches |Bacillus subtilis [TaxId: 1423]
d1ijaa_ : (THR98) (THR145) [view usage] : b.100.1.1 |Sortase |Sortase |Sortase |Sortase A |Staphylococcus aureus [TaxId: 1280]
d3t4mj_ : (LEU177) (PHE204) [view usage] : b.96.1.0 |Nicotinic receptor ligand binding domain-like |Nicotinic receptor ligand binding domain-like |automated matches |automated matches |California sea hare (Aplysia californica) [TaxId: 6500]
d3bzna_ : (THR302) (LYS329) [view usage] : d.161.1.1 |ADC synthase |ADC synthase |ADC synthase |automated matches |Escherichia coli [TaxId: 562]
d2fcpa_ : (GLY682) (PHE723) [view usage] : f.4.3.3 |Transmembrane beta-barrels |Porins |Ligand-gated protein channel |Ferric hydroxamate uptake receptor FhuA |Escherichia coli [TaxId: 562]
d1fi1a_ : (SER685) (PHE725) [view usage] : f.4.3.3 |Transmembrane beta-barrels |Porins |Ligand-gated protein channel |Ferric hydroxamate uptake receptor FhuA |Escherichia coli [TaxId: 562]
d1z6fa1 : (PHE263) (VAL292) [view usage] : b.105.1.1 |Penicillin-binding protein associated domain |Penicillin-binding protein associated domain |PBP5 C-terminal domain-like |Penicillin-binding protein 5, C-terminal domain |Escherichia coli [TaxId: 562]
d1yfra2 : (LYS59) (PHE98) [view usage] : d.104.1.1 |Class II aaRS and biotin synthetases |Class II aaRS and biotin synthetases |Class II aminoacyl-tRNA synthetase (aaRS)-like, catalytic domain |Alanyl-tRNA synthetase (AlaRS) |Aquifex aeolicus [TaxId: 63363]
d1by3a_ : (GLY673) (PHE714) [view usage] : f.4.3.3 |Transmembrane beta-barrels |Porins |Ligand-gated protein channel |Ferric hydroxamate uptake receptor FhuA |Escherichia coli [TaxId: 562]
d1g1ka_ : (LYS108) (ASP142) [view usage] : b.2.2.2 |Common fold of diphtheria toxin/transcription factors/cytochrome f |Carbohydrate-binding domain |Cellulose-binding domain family III |Cohesin domain |Clostridium thermocellum, cellulosome, various modules [TaxId: 1515]
d3s0ma_ : (MET48) (THR69) [view usage] : b.82.1.2 |Double-stranded beta-helix |RmlC-like cupins |Germin/Seed storage 7S protein |Oxalate decarboxylase OxdC (YvrK) |Bacillus subtilis [TaxId: 1423]
d1giys_ : (LYS72) (GLY108) [view usage] : i.1.1.1 |Ribosome and ribosomal fragments |Ribosome and ribosomal fragments |Ribosome complexes |70S ribosome functional complex |Thermus thermophilus [TaxId: 274]
d2mp4a_ : (THR78) (GLY113) [view usage] : d.109.1.0 |Gelsolin-like |Actin depolymerizing proteins |automated matches |automated matches |Nematode (Caenorhabditis elegans) [TaxId: 6239]
d2oqhc1 : (SER2) (THR34) [view usage] : d.54.1.0 |Enolase N-terminal domain-like |Enolase N-terminal domain-like |automated matches |automated matches |Streptomyces coelicolor [TaxId: 100226]
d3c6le2 : (GLY152) (ASN178) [view usage] : b.1.1.2 |Immunoglobulin-like beta-sandwich |Immunoglobulin |C1 set domains (antibody constant domain-like) |T-cell antigen receptor |Mouse (Mus musculus), alpha-chain [TaxId: 10090]
d1xp4a1 : (THR294) (ALA324) [view usage] : b.105.1.1 |Penicillin-binding protein associated domain |Penicillin-binding protein associated domain |PBP5 C-terminal domain-like |D,D-carboxypeptidase DacA, C-terminal domain |Pneumococcus (Streptococcus pneumoniae) [TaxId: 1313]
d1mc1b2 : (PHE12) (LEU50) [view usage] : d.153.1.1 |Ntn hydrolase-like |N-terminal nucleophile aminohydrolases (Ntn hydrolases) |Class II glutamine amidotransferases |beta-Lactam synthetase |Streptomyces clavuligerus [TaxId: 1901]
d1vsaq1 : (LYS72) (LYS110) [view usage] : d.55.1.1 |Ribosomal protein L22 |Ribosomal protein L22 |Ribosomal protein L22 |Ribosomal protein L22 |Thermus thermophilus [TaxId: 274]
d1cd9b1 : (ALA1) (GLU27) [view usage] : b.1.2.1 |Immunoglobulin-like beta-sandwich |Fibronectin type III |Fibronectin type III |Granulocyte colony-stimulating factor (GC-SF) receptor |Mouse (Mus musculus) [TaxId: 10090]
d1qqra_ : (GLU240) (LYS278) [view usage] : d.15.5.1 |beta-Grasp (ubiquitin-like) |Staphylokinase/streptokinase |Staphylokinase/streptokinase |Streptokinase |Streptococcus equisimilis [TaxId: 119602]
d3kmaa_ : (CYS33) (GLY63) [view usage] : b.85.7.2 |beta-clip |SET domain |Viral histone H3 Lysine 27 Methyltransferase |Viral histone H3 Lysine 27 Methyltransferase |Paramecium bursaria chlorella virus 1, PBCV-1 [TaxId: 10506]
d1fl7b_ : (LYS54) (GLN81) [view usage] : g.17.1.4 |Cystine-knot cytokines |Cystine-knot cytokines |Gonadodropin/Follitropin |Follicle stimulating hormone, follitropin, beta chain |Human (Homo sapiens) [TaxId: 9606]
List of distinct SCOP folds where this concept is used (in one or more of its domains):
b.68, b.82, c.69, i.1, c.108, c.66, f.4, d.104, d.153, b.18, c.32, b.2, d.96, b.85, b.1, b.96, d.109, b.11, d.15, b.88,
d.54, b.71, g.17, d.308, g.7, b.100, d.161, g.3, f.10, b.124, b.105, g.20, d.55