Tableau information
Concept source: d1k0xa_ amino acid (a.a.) range (ARG76)(LYS92)
nSSEs in this Concept: 3
String of secondary struct.elems. (SSEs) defining this concept: EEE
Each SSE's a.a.range: (start resi) (end resi) SSEtype (H=Helix; E=Strand) followed by a numeric SSE ID:
(ARG76) (PRO81) E1
(ILE84) (ASP88) E2
(ASP88) (LYS92) E3
Orientation angles° of SSE-pairs; those in contact shown in bold font
E1
E2 -95.2° E2
E3 -137.5° -71.6°
Footnote: Inferred from this concept's usages (listed below) was the angular variance of 1σ = ±13.0° about each orientation angle shown above.
Loci of concept usages (shown as a range of a.a. residue ids) in SCOP(v2.05) domains, along with their brief legend taken from SCOP
d4bofa_ : (VAL210) (SER228) [view usage] : d.126.1.0 |Pentein, beta/alpha-propeller |Pentein |automated matches |automated matches |Streptococcus pyogenes [TaxId: 1314]
d1n9wb1 : (GLY74) (GLU90) [view usage] : b.40.4.1 |OB-fold |Nucleic acid-binding proteins |Anticodon-binding domain |Aspartyl-tRNA synthetase (AspRS) |Thermus thermophilus, AspRS-2 [TaxId: 274]
d3bbnl1 : (ILE70) (LYS88) [view usage] : i.1.1.1 |Ribosome and ribosomal fragments |Ribosome and ribosomal fragments |Ribosome complexes |Eukaryotic, chloroplast (70S ribosome functional complex) |Spinach (Spinacia oleracea) [TaxId: 3562]
d3d43b_ : (SER207) (SER233) [view usage] : c.41.1.1 |Subtilisin-like |Subtilisin-like |Subtilases |automated matches |Bacillus sphaericus [TaxId: 1421]
d1llfa_ : (SER45) (MET61) [view usage] : c.69.1.17 |alpha/beta-Hydrolases |alpha/beta-Hydrolases |Fungal lipases |Type-B carboxylesterase/lipase |Candida cylindracea, cholesterol esterase [TaxId: 44322]
d2bm7b_ : (CYS7) (ARG21) [view usage] : b.80.8.1 |Single-stranded right-handed beta-helix |Pentapeptide repeat-like |Pentapeptide repeats |automated matches |Mycobacterium tuberculosis [TaxId: 83332]
d1qcxa_ : (SER184) (ARG199) [view usage] : b.80.1.2 |Single-stranded right-handed beta-helix |Pectin lyase-like |Pectin lyase |Pectin lyase |Aspergillus niger, type B [TaxId: 5061]
d3tava_ : (GLY205) (LEU222) [view usage] : d.127.1.0 |Creatinase/aminopeptidase |Creatinase/aminopeptidase |automated matches |automated matches |Mycobacterium abscessus [TaxId: 561007]
d2bcma_ : (THR1) (ALA31) [view usage] : b.2.3.0 |Common fold of diphtheria toxin/transcription factors/cytochrome f |Bacterial adhesins |automated matches |automated matches |Escherichia coli [TaxId: 562]
d2dlba1 : (SER2051) (PRO2071) [view usage] : b.174.1.1 |YopT-like |YopT-like |YopT-like |Uncharacterized protein YopT |Bacillus subtilis [TaxId: 1423]
d1dmza_ : (ILE680) (GLY701) [view usage] : b.26.1.2 |SMAD/FHA domain |SMAD/FHA domain |FHA domain |Phosphotyrosine binding domain of Rad53 |Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
d1kqwa_ : (PRO1) (ASN15) [view usage] : b.60.1.2 |Lipocalins |Lipocalins |Fatty acid binding protein-like |Cellular retinol-binding protein II (CRBP) |Zebrafish (Danio rerio) [TaxId: 7955]
d2iq7f_ : (ASN234) (ASN248) [view usage] : b.80.1.3 |Single-stranded right-handed beta-helix |Pectin lyase-like |Galacturonase |automated matches |Colletotrichum lupini [TaxId: 145971]
d2iq7a_ : (ASN234) (ASN248) [view usage] : b.80.1.3 |Single-stranded right-handed beta-helix |Pectin lyase-like |Galacturonase |automated matches |Colletotrichum lupini [TaxId: 145971]
d1ut2h_ : (GLY0) (THR31) [view usage] : b.2.3.6 |Common fold of diphtheria toxin/transcription factors/cytochrome f |Bacterial adhesins |Dr-family adhesin |DraA/Afimbrial adhesin Afa-III |Escherichia coli [TaxId: 562]
d3rmtc_ : (ASN5) (GLY23) [view usage] : d.68.2.0 |IF3-like |EPT/RTPC-like |automated matches |automated matches |Bacillus halodurans [TaxId: 86665]
d1t45a_ : (TRP582) (ALA599) [view usage] : d.144.1.7 |Protein kinase-like (PK-like) |Protein kinase-like (PK-like) |Protein kinases, catalytic subunit |c-KIT receptor |Human (Homo sapiens) [TaxId: 9606]
d1kgya_ : (ALA27) (PRO47) [view usage] : b.18.1.4 |Galactose-binding domain-like |Galactose-binding domain-like |Ephrin receptor ligand binding domain |Ligand-binding domain of the ephb2 receptor tyrosine kinase |Mouse (Mus musculus) [TaxId: 10090]
d2koma_ : (ILE456) (ILE482) [view usage] : b.36.1.0 |PDZ domain-like |PDZ domain-like |automated matches |automated matches |Human (Homo sapiens) [TaxId: 9606]
d1oxsc1 : (ALA272) (GLY297) [view usage] : b.40.6.3 |OB-fold |MOP-like |ABC-transporter additional domain |Glucose transport protein GlcV, N-terminal domain |Sulfolobus solfataricus [TaxId: 2287]
d1usza_ : (GLY0) (THR31) [view usage] : b.2.3.6 |Common fold of diphtheria toxin/transcription factors/cytochrome f |Bacterial adhesins |Dr-family adhesin |DraA/Afimbrial adhesin Afa-III |Escherichia coli [TaxId: 562]
d1rf4a_ : (MET1) (GLY18) [view usage] : d.68.2.2 |IF3-like |EPT/RTPC-like |Enolpyruvate transferase, EPT |5-enol-pyruvyl shikimate-3-phosphate (EPSP) synthase |Pneumococcus (Streptococcus pneumoniae) [TaxId: 1313]
d4bofe_ : (VAL210) (SER228) [view usage] : d.126.1.0 |Pentein, beta/alpha-propeller |Pentein |automated matches |automated matches |Streptococcus pyogenes [TaxId: 1314]
d1e1oa1 : (GLU134) (ARG150) [view usage] : b.40.4.1 |OB-fold |Nucleic acid-binding proteins |Anticodon-binding domain |Lysyl-tRNA synthetase (LysRS) |Escherichia coli, gene lysU [TaxId: 562]
d1r4ka_ : (ASN420) (THR436) [view usage] : b.34.14.1 |SH3-like barrel |PAZ domain |PAZ domain |Argonaute 1 |Fruit fly (Drosophila melanogaster) [TaxId: 7227]
d1gd5a_ : (GLY4) (VAL21) [view usage] : d.189.1.1 |PX domain |PX domain |PX domain |p47phox NADPH oxidase |Human (Homo sapiens) [TaxId: 9606]
d117ea_ : (GLY132) (LEU146) [view usage] : b.40.5.1 |OB-fold |Inorganic pyrophosphatase |Inorganic pyrophosphatase |Inorganic pyrophosphatase |Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
d2lxna_ : (LYS126) (ASP143) [view usage] : c.23.16.1 |Flavodoxin-like |Class I glutamine amidotransferase-like |Class I glutamine amidotransferases (GAT) |automated matches |Methanocaldococcus jannaschii [TaxId: 243232]
d1nhca_ : (ASN242) (ASN256) [view usage] : b.80.1.3 |Single-stranded right-handed beta-helix |Pectin lyase-like |Galacturonase |Polygalacturonase |Fungus (Aspergillus niger), endo-polygalacturonase I [TaxId: 5061]
d4bofb_ : (VAL210) (SER228) [view usage] : d.126.1.0 |Pentein, beta/alpha-propeller |Pentein |automated matches |automated matches |Streptococcus pyogenes [TaxId: 1314]
d2jiga_ : (ASP136) (GLU174) [view usage] : b.82.2.15 |Double-stranded beta-helix |Clavaminate synthase-like |proly-4-hydroxylase (P4H, PHD) like |P4H-1 |Green alga (Chlamydomonas reinhardtii) [TaxId: 3055]
d1n9wa1 : (GLY74) (GLU90) [view usage] : b.40.4.1 |OB-fold |Nucleic acid-binding proteins |Anticodon-binding domain |Aspartyl-tRNA synthetase (AspRS) |Thermus thermophilus, AspRS-2 [TaxId: 274]
d4riwd_ : (ALA678) (ALA698) [view usage] : d.144.1.7 |Protein kinase-like (PK-like) |Protein kinase-like (PK-like) |Protein kinases, catalytic subunit |EGF receptor tyrosine kinase, Erbb-1 |Human (Homo sapiens) [TaxId: 9606]
d3gvka1 : (THR491) (ASP516) [view usage] : b.68.1.2 |6-bladed beta-propeller |Sialidases |Endo-alpha-sialidase |automated matches |Enterobacteria phage [TaxId: 344021]
d1c8ua2 : (GLY216) (PHE235) [view usage] : d.38.1.3 |Thioesterase/thiol ester dehydrase-isomerase |Thioesterase/thiol ester dehydrase-isomerase |Acyl-CoA thioesterase |Thioesterase II (TesB) |Escherichia coli [TaxId: 562]
d2bm4a1 : (LYS121) (GLY136) [view usage] : b.80.8.1 |Single-stranded right-handed beta-helix |Pentapeptide repeat-like |Pentapeptide repeats |Hypothetical protein Rv3361c (MT3469) |Mycobacterium tuberculosis [TaxId: 1773]
d2bm4b_ : (SER62) (ALA76) [view usage] : b.80.8.1 |Single-stranded right-handed beta-helix |Pentapeptide repeat-like |Pentapeptide repeats |automated matches |Mycobacterium tuberculosis [TaxId: 83332]
d2bm4b_ : (CYS122) (GLY136) [view usage] : b.80.8.1 |Single-stranded right-handed beta-helix |Pentapeptide repeat-like |Pentapeptide repeats |automated matches |Mycobacterium tuberculosis [TaxId: 83332]
d1c7sa4 : (MET222) (LEU241) [view usage] : d.92.2.1 |Zincin-like |beta-N-acetylhexosaminidase-like domain |beta-N-acetylhexosaminidase domain |Bacterial chitobiase, Domain 2 |Serratia marcescens [TaxId: 615]
d1ttta1 : (GLU261) (ALA282) [view usage] : b.43.3.1 |Reductase/isomerase/elongation factor common domain |Translation proteins |Elongation factors |Elongation factor Tu (EF-Tu), domain 2 |Thermus aquaticus [TaxId: 271]
d1e6aa_ : (GLY132) (LEU146) [view usage] : b.40.5.1 |OB-fold |Inorganic pyrophosphatase |Inorganic pyrophosphatase |Inorganic pyrophosphatase |Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
d3pbsa1 : (PRO190) (LEU221) [view usage] : d.175.1.0 |Penicillin binding protein dimerisation domain |Penicillin binding protein dimerisation domain |automated matches |automated matches |Pseudomonas aeruginosa [TaxId: 208964]
d1ojqa_ : (ARG129) (GLU157) [view usage] : d.166.1.1 |ADP-ribosylation |ADP-ribosylation |ADP-ribosylating toxins |Exoenzyme c3 |Staphylococcus aureus [TaxId: 1280]
d2gg4a_ : (ARG8) (PRO25) [view usage] : d.68.2.2 |IF3-like |EPT/RTPC-like |Enolpyruvate transferase, EPT |5-enol-pyruvyl shikimate-3-phosphate (EPSP) synthase |Agrobacterium sp. [TaxId: 268951]
d1huja_ : (GLY132) (LEU146) [view usage] : b.40.5.1 |OB-fold |Inorganic pyrophosphatase |Inorganic pyrophosphatase |Inorganic pyrophosphatase |Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
d2bm5b_ : (GLY131) (GLY146) [view usage] : b.80.8.1 |Single-stranded right-handed beta-helix |Pentapeptide repeat-like |Pentapeptide repeats |automated matches |Mycobacterium tuberculosis [TaxId: 83332]
d2f3xa1 : (GLU125) (GLN142) [view usage] : d.38.1.5 |Thioesterase/thiol ester dehydrase-isomerase |Thioesterase/thiol ester dehydrase-isomerase |PaaI/YdiI-like |Transcription factor FapR, C-terminal domain |Bacillus subtilis [TaxId: 1423]
d4kfqb_ : (ARG5) (THR45) [view usage] : c.94.1.1 |Periplasmic binding protein-like II |Periplasmic binding protein-like II |Phosphate binding protein-like |N-methyl-D-aspartate receptor subunit 1 |Norway rat (Rattus norvegicus) [TaxId: 10116]
d1bhea_ : (SER286) (ASN303) [view usage] : b.80.1.3 |Single-stranded right-handed beta-helix |Pectin lyase-like |Galacturonase |Polygalacturonase |Erwinia carotovora, subsp. carotovora [TaxId: 554]
d1ws1a_ : (ASN74) (CYS90) [view usage] : d.167.1.0 |Peptide deformylase |Peptide deformylase |automated matches |automated matches |Bacillus cereus [TaxId: 1396]
d4ffue_ : (VAL79) (ILE96) [view usage] : d.38.1.0 |Thioesterase/thiol ester dehydrase-isomerase |Thioesterase/thiol ester dehydrase-isomerase |automated matches |automated matches |Sinorhizobium meliloti [TaxId: 266834]
d2bqpb_ : (SER48) (PRO74) [view usage] : b.29.1.1 |Concanavalin A-like lectins/glucanases |Concanavalin A-like lectins/glucanases |Legume lectins |Legume lectin |Pea (Pisum sativum) [TaxId: 3888]
d2bsea_ : (ALA246) (LYS264) [view usage] : b.21.1.3 |Virus attachment protein globular domain |Virus attachment protein globular domain |Lactophage receptor-binding protein head domain |receptor binding protein, rbp, C-terminal domain |Lactococcus lactis phage p2 [TaxId: 100641]
List of distinct SCOP folds where this concept is used (in one or more of its domains):
b.68, b.80, b.82, c.69, c.94, d.68, i.1, b.29, d.92, c.23, d.144, b.40, d.166, b.60, b.18, d.127, b.2, d.126, c.41, d.38,
b.21, d.167, b.26, b.34, b.43, d.175, b.36, d.189, b.174