Tableau information
Concept source: d2i9wa1 amino acid (a.a.) range (GLY127)(THR156)
nSSEs in this Concept: 3
String of secondary struct.elems. (SSEs) defining this concept: EEE
Each SSE's a.a.range: (start resi) (end resi) SSEtype (H=Helix; E=Strand) followed by a numeric SSE ID:
(GLY127) (GLU133) E1
(SER135) (LYS141) E2
(SER146) (THR156) E3
Orientation angles° of SSE-pairs; those in contact shown in bold font
E1
E2 -44.4° E2
E3 119.7° 148.8°
Footnote: Inferred from this concept's usages (listed below) was the angular variance of 1σ = ±10.1° about each orientation angle shown above.
Loci of concept usages (shown as a range of a.a. residue ids) in SCOP(v2.05) domains, along with their brief legend taken from SCOP
d1xyga2 : (VAL286) (ILE325) [view usage] : d.81.1.1 |FwdE/GAPDH domain-like |Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain |GAPDH-like |N-acetyl-gamma-glutamyl-phosphate reductase ArgC |Thale cress (Arabidopsis thaliana) [TaxId: 3702]
d4duvb1 : (GLN50) (VAL85) [view usage] : b.18.1.0 |Galactose-binding domain-like |Galactose-binding domain-like |automated matches |automated matches |Escherichia coli K-12 [TaxId: 83333]
d1kg1a_ : (SER23) (THR40) [view usage] : g.70.1.1 |Necrosis inducing protein 1, NIP1 |Necrosis inducing protein 1, NIP1 |Necrosis inducing protein 1, NIP1 |Necrosis inducing protein 1, NIP1 |Leaf blotch of barley (Rhynchosporium secalis) [TaxId: 38038]
d4n72c_ : (CYS546) (GLY585) [view usage] : c.43.1.0 |CoA-dependent acyltransferases |CoA-dependent acyltransferases |automated matches |automated matches |Escherichia coli [TaxId: 83334]
d2g9fa1 : (TRP519) (LEU537) [view usage] : b.18.1.29 |Galactose-binding domain-like |Galactose-binding domain-like |Extended PAW domain |Peptide:N-glycanase, PNGase, C-terminal domain |Mouse (Mus musculus) [TaxId: 10090]
d1svpa_ : (ALA107) (MET132) [view usage] : b.47.1.3 |Trypsin-like serine proteases |Trypsin-like serine proteases |Viral proteases |Viral capsid protein |Sindbis virus [TaxId: 11034]
d2xhub_ : (ILE134) (PRO156) [view usage] : e.8.1.4 |DNA/RNA polymerases |DNA/RNA polymerases |RNA-dependent RNA-polymerase |automated matches |Hepatitis C virus [TaxId: 11103]
d4bl2a1 : (GLY106) (HIS129) [view usage] : d.17.4.0 |Cystatin-like |NTF2-like |automated matches |automated matches |Staphylococcus aureus [TaxId: 1280]
d1s55a_ : (PRO249) (GLY278) [view usage] : b.22.1.1 |TNF-like |TNF-like |TNF-like |TRANCE/RANKL cytokine |Mouse (Mus musculus) [TaxId: 10090]
d2je8a4 : (SER31) (PRO52) [view usage] : b.18.1.5 |Galactose-binding domain-like |Galactose-binding domain-like |beta-Galactosidase/glucuronidase, N-terminal domain |Beta-mannosidase |Bacteroides thetaiotaomicron [TaxId: 818]
d4hn0d_ : (GLY8) (GLU26) [view usage] : b.82.1.0 |Double-stranded beta-helix |RmlC-like cupins |automated matches |automated matches |Streptomyces bikiniensis [TaxId: 1896]
d1xwna1 : (PRO5) (TYR28) [view usage] : b.62.1.1 |Cyclophilin-like |Cyclophilin-like |Cyclophilin (peptidylprolyl isomerase) |Peptidyl-prolyl cis-trans isomerase-like 1, PPIL1 |Human (Homo sapiens) [TaxId: 9606]
d1tzaa_ : (GLN42) (GLY65) [view usage] : b.1.23.1 |Immunoglobulin-like beta-sandwich |ApaG-like |ApaG-like |ApaG |Shewanella oneidensis [TaxId: 70863]
d1dila_ : (GLU4) (SER27) [view usage] : b.68.1.1 |6-bladed beta-propeller |Sialidases |Sialidases (neuraminidases) |Salmonella sialidase |Salmonella typhimurium, strain lt2 [TaxId: 90371]
d4j8nd_ : (ARG126) (LEU149) [view usage] : d.144.1.7 |Protein kinase-like (PK-like) |Protein kinase-like (PK-like) |Protein kinases, catalytic subunit |automated matches |Human (Homo sapiens) [TaxId: 9606]
d1i1qa_ : (GLN444) (ILE466) [view usage] : d.161.1.1 |ADC synthase |ADC synthase |ADC synthase |Anthranilate synthase aminodeoxyisochorismate synthase/lyase subunit, TrpE |Salmonella typhimurium [TaxId: 90371]
d1ynjd1 : (THR1115) (LEU1134) [view usage] : e.29.1.2 |beta and beta-prime subunits of DNA dependent RNA-polymerase |beta and beta-prime subunits of DNA dependent RNA-polymerase |RNA-polymerase beta-prime |RNA-polymerase beta-prime |Thermus aquaticus [TaxId: 271]
d3ef8a1 : (ARG67) (SER90) [view usage] : d.17.4.28 |Cystatin-like |NTF2-like |BaiE/LinA-like |Uncharacterized protein Saro1465 |Novosphingobium aromaticivorans [TaxId: 48935]
d2dsoe_ : (GLN30) (ASP53) [view usage] : b.68.6.1 |6-bladed beta-propeller |Calcium-dependent phosphotriesterase |SGL-like |automated matches |Staphylococcus aureus [TaxId: 1280]
d2je8b4 : (SER31) (PRO52) [view usage] : b.18.1.5 |Galactose-binding domain-like |Galactose-binding domain-like |beta-Galactosidase/glucuronidase, N-terminal domain |Beta-mannosidase |Bacteroides thetaiotaomicron [TaxId: 818]
d3tgla_ : (PRO194) (THR236) [view usage] : c.69.1.17 |alpha/beta-Hydrolases |alpha/beta-Hydrolases |Fungal lipases |Triacylglycerol lipase |Rhizomucor miehei [TaxId: 4839]
d3n3ka_ : (VAL1006) (SER1027) [view usage] : d.3.1.9 |Cysteine proteinases |Cysteine proteinases |Ubiquitin carboxyl-terminal hydrolase, UCH |Ubiquitin carboxyl-terminal hydrolase 8 |Human (Homo sapiens) [TaxId: 9606]
d4gcpa_ : (GLY8) (ARG42) [view usage] : f.4.3.1 |Transmembrane beta-barrels |Porins |Porin |Porin |Escherichia coli, different sequences [TaxId: 562]
d1dbna_ : (GLY64) (ASP87) [view usage] : b.29.1.1 |Concanavalin A-like lectins/glucanases |Concanavalin A-like lectins/glucanases |Legume lectins |Legume lectin |Maackia amurensis, leukoagglutinin [TaxId: 37501]
d4ay9b_ : (ASN1) (ASN24) [view usage] : g.17.1.4 |Cystine-knot cytokines |Cystine-knot cytokines |Gonadodropin/Follitropin |automated matches |Human (Homo sapiens) [TaxId: 9606]
d1mvma_ : (LYS100) (ALA116) [view usage] : b.121.5.2 |Nucleoplasmin-like/VP (viral coat and capsid proteins) |ssDNA viruses |Parvoviridae-like VP |Parvovirus (panleukopenia virus) capsid protein |Murine minute virus, strain i [TaxId: 10794]
d1bmv22 : (VAL2010) (PRO2032) [view usage] : b.121.4.2 |Nucleoplasmin-like/VP (viral coat and capsid proteins) |Positive stranded ssRNA viruses |Comoviridae-like VP |Comovirus coat proteins (VP37 and VP23) |BPMV (Bean pod mottle virus) [TaxId: 12260]
d4b2bb_ : (ASP33) (GLY70) [view usage] : d.40.1.1 |CI-2 family of serine protease inhibitors |CI-2 family of serine protease inhibitors |CI-2 family of serine protease inhibitors |automated matches |Medicinal leech (Hirudo medicinalis) [TaxId: 6421]
d1uxxx_ : (ASN50) (ARG72) [view usage] : b.18.1.10 |Galactose-binding domain-like |Galactose-binding domain-like |Family 6 carbohydrate binding module, CBM6 |Carbohydrate binding module from xylanase U |Clostridium thermocellum [TaxId: 1515]
d4duva1 : (GLN50) (VAL85) [view usage] : b.18.1.0 |Galactose-binding domain-like |Galactose-binding domain-like |automated matches |automated matches |Escherichia coli K-12 [TaxId: 83333]
d3cnca_ : (THR277) (ASN308) [view usage] : b.21.1.1 |Virus attachment protein globular domain |Virus attachment protein globular domain |Adenovirus fiber protein "knob" domain |Adenovirus fiber protein "knob" domain |Human adenovirus 16
d1bbpa_ : (GLY96) (ASP122) [view usage] : b.60.1.1 |Lipocalins |Lipocalins |Retinol binding protein-like |Bilin-binding protein |Cabbage butterfly (Pieris brassicae) [TaxId: 7116]
d1ebpa2 : (GLU117) (LEU143) [view usage] : b.1.2.1 |Immunoglobulin-like beta-sandwich |Fibronectin type III |Fibronectin type III |Erythropoietin (EPO) receptor |Human (Homo sapiens) [TaxId: 9606]
d1xsia2 : (GLY13) (ALA36) [view usage] : b.30.5.11 |Supersandwich |Galactose mutarotase-like |YicI N-terminal domain-like |Putative glucosidase YicI, N-terminal domain |Escherichia coli [TaxId: 562]
d1acbi_ : (ASP33) (GLY70) [view usage] : d.40.1.1 |CI-2 family of serine protease inhibitors |CI-2 family of serine protease inhibitors |CI-2 family of serine protease inhibitors |Eglin C |Medicinal leech (Hirudo medicinalis) [TaxId: 6421]
d4prsa_ : (TYR92) (THR111) [view usage] : c.94.1.0 |Periplasmic binding protein-like II |Periplasmic binding protein-like II |automated matches |automated matches |Thermotoga maritima [TaxId: 243274]
d2xy1a1 : (GLY225) (ASN247) [view usage] : b.1.1.0 |Immunoglobulin-like beta-sandwich |Immunoglobulin |automated matches |automated matches |Human (Homo sapiens) [TaxId: 9606]
d4niaa_ : (LYS30) (VAL57) [view usage] : b.121.7.1 |Nucleoplasmin-like/VP (viral coat and capsid proteins) |Satellite viruses |Satellite viruses |STNV coat protein |Satellite tobacco necrosis virus [TaxId: 12881]
d1xr0b_ : (THR12) (LEU40) [view usage] : b.55.1.2 |PH domain-like barrel |PH domain-like |Phosphotyrosine-binding domain (PTB) |FGFR substrate 2 (SNT-1) |Human (Homo sapiens) [TaxId: 9606]
d1zsoa1 : (GLY103) (ASP127) [view usage] : b.166.1.1 |MAL13P1.257-like |MAL13P1.257-like |MAL13P1.257-like |Hypothetical protein MAL13P1.257 |Malaria parasite (Plasmodium falciparum) [TaxId: 5833]
d4ee9a_ : (SER1) (PRO30) [view usage] : c.1.8.0 |TIM beta/alpha-barrel |(Trans)glycosidases |automated matches |automated matches |Uncultured bacterium [TaxId: 77133]
d1h8oa2 : (GLN132) (GLY157) [view usage] : b.1.1.1 |Immunoglobulin-like beta-sandwich |Immunoglobulin |V set domains (antibody variable domain-like) |Immunoglobulin heavy chain variable domain, VH |Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]
d2gqra_ : (GLY170) (GLU192) [view usage] : d.143.1.0 |SAICAR synthase-like |SAICAR synthase-like |automated matches |automated matches |Escherichia coli [TaxId: 562]
d2btva_ : (SER142) (GLU160) [view usage] : e.28.1.1 |Reovirus inner layer core protein p3 |Reovirus inner layer core protein p3 |Orbivirus core |BTV vp3 |Bluetongue virus, strain 1 [TaxId: 40051]
d2kkia_ : (ASN9) (ALA27) [view usage] : b.42.1.2 |beta-Trefoil |Cytokine |Interleukin-1 (IL-1) |automated matches |Human (Homo sapiens) [TaxId: 9606]
d2j0xb1 : (GLN136) (ILE159) [view usage] : c.73.1.3 |Carbamate kinase-like |Carbamate kinase-like |PyrH-like |Aspartokinase |Escherichia coli [TaxId: 562]
d3u0oa2 : (GLY325) (GLU345) [view usage] : d.139.1.0 |PurM C-terminal domain-like |PurM C-terminal domain-like |automated matches |automated matches |Escherichia coli K-12 [TaxId: 83333]
d1mwsa1 : (GLY106) (ASP128) [view usage] : d.17.4.5 |Cystatin-like |NTF2-like |Penicillin binding protein 2a (PBP2A), N-terminal domain |Penicillin binding protein 2a (PBP2A), N-terminal domain |Staphylococcus aureus [TaxId: 1280]
d4dkia1 : (GLY106) (HIS129) [view usage] : d.17.4.5 |Cystatin-like |NTF2-like |Penicillin binding protein 2a (PBP2A), N-terminal domain |Penicillin binding protein 2a (PBP2A), N-terminal domain |Staphylococcus aureus [TaxId: 1280]
d1d4ba_ : (SER20) (PRO37) [view usage] : d.15.2.1 |beta-Grasp (ubiquitin-like) |CAD & PB1 domains |CAD domain |Cell death-inducing effector B (CIDE-B), N-terminal domain |Human (Homo sapiens) [TaxId: 9606]
d2nn6d2 : (ALA150) (LEU167) [view usage] : d.101.1.1 |Ribonuclease PH domain 2-like |Ribonuclease PH domain 2-like |Ribonuclease PH domain 2-like |Exosome complex exonuclease RRP46 |Human (Homo sapiens) [TaxId: 9606]
d4mqwe_ : (ASN1) (ASN24) [view usage] : g.17.1.4 |Cystine-knot cytokines |Cystine-knot cytokines |Gonadodropin/Follitropin |Follicle stimulating hormone, follitropin, beta chain |Human (Homo sapiens) [TaxId: 9606]
d3vd9b1 : (GLN50) (VAL85) [view usage] : b.18.1.5 |Galactose-binding domain-like |Galactose-binding domain-like |beta-Galactosidase/glucuronidase, N-terminal domain |beta-Galactosidase |Escherichia coli [TaxId: 562]
d1jtzx_ : (PRO249) (PHE279) [view usage] : b.22.1.1 |TNF-like |TNF-like |TNF-like |TRANCE/RANKL cytokine |Mouse (Mus musculus) [TaxId: 10090]
d2wnvd_ : (GLN90) (THR113) [view usage] : b.22.1.1 |TNF-like |TNF-like |TNF-like |Complement c1q globular head, A chain |Human (Homo sapiens) [TaxId: 9606]
d1jm1a_ : (HIS173) (GLY212) [view usage] : b.33.1.1 |ISP domain |ISP domain |Rieske iron-sulfur protein (ISP) |Rieske protein II (SoxF) |Sulfolobus acidocaldarius [TaxId: 2285]
d3bb9b_ : (LYS119) (SER147) [view usage] : d.17.4.16 |Cystatin-like |NTF2-like |SO0125-like |Uncharacterized protein Sfri1973 |Shewanella frigidimarina [TaxId: 56812]
d1oioa_ : (ILE38) (LEU62) [view usage] : b.2.3.5 |Common fold of diphtheria toxin/transcription factors/cytochrome f |Bacterial adhesins |F17c-type adhesin |Fimbrial lectin GafD |Escherichia coli [TaxId: 562]
d4iqka_ : (LEU373) (ASP389) [view usage] : b.68.11.1 |6-bladed beta-propeller |Kelch motif |Kelch motif |automated matches |Human (Homo sapiens) [TaxId: 9606]
d2okma_ : (GLY79) (ILE100) [view usage] : b.2.3.0 |Common fold of diphtheria toxin/transcription factors/cytochrome f |Bacterial adhesins |automated matches |automated matches |Enterococcus faecalis [TaxId: 1351]
d2bqpb_ : (GLU2) (LEU45) [view usage] : b.29.1.1 |Concanavalin A-like lectins/glucanases |Concanavalin A-like lectins/glucanases |Legume lectins |Legume lectin |Pea (Pisum sativum) [TaxId: 3888]
d4b1td_ : (ASP33) (GLY70) [view usage] : d.40.1.1 |CI-2 family of serine protease inhibitors |CI-2 family of serine protease inhibitors |CI-2 family of serine protease inhibitors |automated matches |Medicinal leech (Hirudo medicinalis) [TaxId: 6421]
d4qc2a_ : (ALA2) (VAL19) [view usage] : c.37.1.0 |P-loop containing nucleoside triphosphate hydrolases |P-loop containing nucleoside triphosphate hydrolases |automated matches |automated matches |Escherichia coli [TaxId: 536056]
d3e77a_ : (VAL172) (ILE211) [view usage] : c.67.1.0 |PLP-dependent transferase-like |PLP-dependent transferases |automated matches |automated matches |Human (Homo sapiens) [TaxId: 9606]
d3sila_ : (GLU4) (SER27) [view usage] : b.68.1.1 |6-bladed beta-propeller |Sialidases |Sialidases (neuraminidases) |Salmonella sialidase |Salmonella typhimurium, strain lt2 [TaxId: 90371]
d1bdxa3 : (GLN43) (ASN64) [view usage] : b.40.4.2 |OB-fold |Nucleic acid-binding proteins |DNA helicase RuvA subunit, N-terminal domain |DNA helicase RuvA subunit, N-terminal domain |Escherichia coli [TaxId: 562]
d1ahua2 : (SER118) (GLU143) [view usage] : d.145.1.1 |FAD-binding/transporter-associated domain-like |FAD-binding/transporter-associated domain-like |FAD-linked oxidases, N-terminal domain |Vanillyl-alcohol oxidase |Fungus (Penicillium simplicissimum) [TaxId: 69488]
d1amxa_ : (GLY214) (GLY236) [view usage] : b.2.3.1 |Common fold of diphtheria toxin/transcription factors/cytochrome f |Bacterial adhesins |Collagen-binding domain of adhesin |Collagen-binding domain of adhesin |Staphylococcus aureus [TaxId: 1280]
d4b2ab_ : (ASP33) (GLY70) [view usage] : d.40.1.1 |CI-2 family of serine protease inhibitors |CI-2 family of serine protease inhibitors |CI-2 family of serine protease inhibitors |automated matches |Medicinal leech (Hirudo medicinalis) [TaxId: 6421]
List of distinct SCOP folds where this concept is used (in one or more of its domains):
b.68, e.8, c.1, b.82, c.67, c.69, c.94, b.29, b.30, b.47, f.4, d.144, b.40, c.37, b.60, b.18, b.121, d.3, d.81, b.2,
b.1, c.43, c.73, d.143, b.42, d.17, b.62, b.21, b.55, b.22, d.145, d.139, d.15, g.17, b.33, d.101, d.161, e.29, b.166, d.40,
e.28, g.70