Tableau information
Concept source: d2vdca3 amino acid (a.a.) range (ARG339)(SER367)
nSSEs in this Concept: 3
String of secondary struct.elems. (SSEs) defining this concept: EEE
Each SSE's a.a.range: (start resi) (end resi) SSEtype (H=Helix; E=Strand) followed by a numeric SSE ID:
(ARG339) (ARG347) E1
(ARG351) (THR359) E2
(GLY361) (SER367) E3
Orientation angles° of SSE-pairs; those in contact shown in bold font
E1
E2 -142.4° E2
E3 35.0° 162.9°
Footnote: Inferred from this concept's usages (listed below) was the angular variance of 1σ = ±9.8° about each orientation angle shown above.
Loci of concept usages (shown as a range of a.a. residue ids) in SCOP(v2.05) domains, along with their brief legend taken from SCOP
d2fgqx_ : (ILE172) (ILE206) [view usage] : f.4.3.1 |Transmembrane beta-barrels |Porins |Porin |automated matches |Delftia acidovorans [TaxId: 80866]
d1p1ea_ : (VAL19) (ALA62) [view usage] : b.36.1.1 |PDZ domain-like |PDZ domain-like |PDZ domain |Glutamate receptor interacting protein |Norway rat (Rattus norvegicus) [TaxId: 10116]
d4mgga2 : (THR327) (THR344) [view usage] : c.1.11.0 |TIM beta/alpha-barrel |Enolase C-terminal domain-like |automated matches |automated matches |Labrenzia aggregata [TaxId: 384765]
d3nfla_ : (ASN514) (GLY550) [view usage] : b.36.1.1 |PDZ domain-like |PDZ domain-like |PDZ domain |Tyrosine-protein phosphatase non-receptor type 4, PTPN4 |Human (Homo sapiens) [TaxId: 9606]
d1hq0a_ : (THR951) (ARG981) [view usage] : d.194.1.1 |CNF1/YfiH-like putative cysteine hydrolases |CNF1/YfiH-like putative cysteine hydrolases |Type 1 cytotoxic necrotizing factor, catalytic domain |Type 1 cytotoxic necrotizing factor, catalytic domain |Escherichia coli [TaxId: 562]
d1l1ia_ : (ASN37) (ASP65) [view usage] : b.80.2.1 |Single-stranded right-handed beta-helix |Insect cysteine-rich antifreeze protein |Insect cysteine-rich antifreeze protein |Insect cysteine-rich antifreeze protein |Yellow mealworm (Tenebrio molitor) [TaxId: 7067]
d2ev8a_ : (VAL69) (HIS101) [view usage] : b.36.1.1 |PDZ domain-like |PDZ domain-like |PDZ domain |automated matches |Human (Homo sapiens) [TaxId: 9606]
d3ivma1 : (PHE174) (GLN204) [view usage] : b.69.7.0 |7-bladed beta-propeller |Peptidase/esterase 'gauge' domain |automated matches |automated matches |Aeromonas punctata [TaxId: 648]
d1jh5a_ : (SER30) (GLU48) [view usage] : b.22.1.1 |TNF-like |TNF-like |TNF-like |Soluble part of TALL-1, sTALL-1 (BAFF) |Human (Homo sapiens) [TaxId: 9606]
d3soza_ : (LEU191) (ALA214) [view usage] : c.23.16.9 |Flavodoxin-like |Class I glutamine amidotransferase-like |STM3548-like |automated matches |Salmonella enterica [TaxId: 99287]
d1xata_ : (GLY145) (ARG162) [view usage] : b.81.1.3 |Single-stranded left-handed beta-helix |Trimeric LpxA-like enzymes |Galactoside acetyltransferase-like |Xenobiotic acetyltransferase |Pseudomonas aeruginosa [TaxId: 287]
d2rf0a_ : (PHE25) (SER47) [view usage] : b.34.2.0 |SH3-like barrel |SH3-domain |automated matches |automated matches |Human (Homo sapiens) [TaxId: 9606]
d1dlpa1 : (ASN2) (MET32) [view usage] : b.78.1.1 |beta-Prism II |alpha-D-mannose-specific plant lectins |alpha-D-mannose-specific plant lectins |Fetuin-binding protein Scafet precursor |Bluebell (Scilla campanulata) [TaxId: 81759]
d2vgba1 : (GLY244) (LEU261) [view usage] : b.58.1.1 |PK beta-barrel domain-like |PK beta-barrel domain-like |Pyruvate kinase beta-barrel domain |Pyruvate kinase (PK) |Human (Homo sapiens) [TaxId: 9606]
d1ajoa_ : (PHE180) (ASN213) [view usage] : b.29.1.2 |Concanavalin A-like lectins/glucanases |Concanavalin A-like lectins/glucanases |Glycosyl hydrolases family 16 |Bacillus 1-3,1-4-beta-glucanase |Bacillus macerans [TaxId: 44252]
d3pbga_ : (THR311) (TYR339) [view usage] : c.1.8.4 |TIM beta/alpha-barrel |(Trans)glycosidases |Family 1 of glycosyl hydrolase |6-phospho-beta-D-galactosidase, PGAL |Lactococcus lactis [TaxId: 1358]
d2h2ba_ : (HIS16) (GLY62) [view usage] : b.36.1.1 |PDZ domain-like |PDZ domain-like |PDZ domain |automated matches |Human (Homo sapiens) [TaxId: 9606]
d4je1a_ : (GLY15) (LEU39) [view usage] : c.47.1.10 |Thioredoxin fold |Thioredoxin-like |Glutathione peroxidase-like |automated matches |Burkholderia cenocepacia [TaxId: 216591]
d1umzb_ : (ASN14) (LYS39) [view usage] : b.29.1.2 |Concanavalin A-like lectins/glucanases |Concanavalin A-like lectins/glucanases |Glycosyl hydrolases family 16 |Xyloglucan endotransglycosylase |European aspen (Populus tremula) [TaxId: 113636]
d4c3za_ : (SER643) (GLN679) [view usage] : c.37.1.0 |P-loop containing nucleoside triphosphate hydrolases |P-loop containing nucleoside triphosphate hydrolases |automated matches |automated matches |Human (Homo sapiens) [TaxId: 9606]
d3nfka_ : (ASN514) (GLY550) [view usage] : b.36.1.1 |PDZ domain-like |PDZ domain-like |PDZ domain |Tyrosine-protein phosphatase non-receptor type 4, PTPN4 |Human (Homo sapiens) [TaxId: 9606]
d3igjc_ : (LYS166) (GLU187) [view usage] : b.81.1.0 |Single-stranded left-handed beta-helix |Trimeric LpxA-like enzymes |automated matches |automated matches |Anthrax bacillus (Bacillus anthracis) [TaxId: 1392]
d4evia2 : (LYS240) (ASP262) [view usage] : c.66.1.0 |S-adenosyl-L-methionine-dependent methyltransferases |S-adenosyl-L-methionine-dependent methyltransferases |automated matches |automated matches |Linum nodiflorum [TaxId: 407264]
d1umza_ : (ASN14) (LEU37) [view usage] : b.29.1.2 |Concanavalin A-like lectins/glucanases |Concanavalin A-like lectins/glucanases |Glycosyl hydrolases family 16 |Xyloglucan endotransglycosylase |European aspen (Populus tremula) [TaxId: 113636]
d3td9a_ : (ILE335) (PRO366) [view usage] : c.93.1.0 |Periplasmic binding protein-like I |Periplasmic binding protein-like I |automated matches |automated matches |Thermotoga maritima [TaxId: 2336]
d4e6tc_ : (LYS178) (GLY195) [view usage] : b.81.1.0 |Single-stranded left-handed beta-helix |Trimeric LpxA-like enzymes |automated matches |automated matches |Acinetobacter baumannii [TaxId: 470]
d1x69a_ : (TYR24) (ASN44) [view usage] : b.34.2.0 |SH3-like barrel |SH3-domain |automated matches |automated matches |Human (Homo sapiens) [TaxId: 9606]
d1dlpb1 : (ASN2) (THR31) [view usage] : b.78.1.1 |beta-Prism II |alpha-D-mannose-specific plant lectins |alpha-D-mannose-specific plant lectins |Fetuin-binding protein Scafet precursor |Bluebell (Scilla campanulata) [TaxId: 81759]
d3hhqf_ : (LYS7) (GLN37) [view usage] : b.85.4.0 |beta-clip |dUTPase-like |automated matches |automated matches |Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
d1af6a_ : (VAL50) (GLU83) [view usage] : f.4.3.2 |Transmembrane beta-barrels |Porins |Maltoporin-like |Maltoporin (also LamB protein) |Escherichia coli [TaxId: 562]
d1sfna_ : (GLY1126) (ALA1173) [view usage] : b.82.1.11 |Double-stranded beta-helix |RmlC-like cupins |YlbA-like |Hypothetical protein DR1152 |Deinococcus radiodurans [TaxId: 1299]
d1ogmx1 : (ASN6) (LEU46) [view usage] : b.133.1.1 |Dextranase, N-terminal domain |Dextranase, N-terminal domain |Dextranase, N-terminal domain |Dextranase, N-terminal domain |Penicillium minioluteum [TaxId: 28574]
d1v7va2 : (GLY232) (GLY267) [view usage] : b.30.5.3 |Supersandwich |Galactose mutarotase-like |Glycosyltransferase family 36 N-terminal domain |Chitobiose phosphorylase ChbP |Vibrio proteolyticus [TaxId: 671]
d1q1ma_ : (ILE145) (GLU170) [view usage] : c.45.1.2 |(Phosphotyrosine protein) phosphatases II |(Phosphotyrosine protein) phosphatases II |Higher-molecular-weight phosphotyrosine protein phosphatases |Tyrosine phosphatase |Human (Homo sapiens), 1B [TaxId: 9606]
d2ea3a_ : (ALA48) (ALA70) [view usage] : b.47.1.0 |Trypsin-like serine proteases |Trypsin-like serine proteases |automated matches |automated matches |Cellulomonas bogoriensis [TaxId: 301388]
d2csja1 : (GLU9) (GLY56) [view usage] : b.36.1.1 |PDZ domain-like |PDZ domain-like |PDZ domain |Tight junction protein ZO-2, Tjp2 |Mouse (Mus musculus) [TaxId: 10090]
d2ed7a_ : (VAL27) (THR50) [view usage] : b.1.2.0 |Immunoglobulin-like beta-sandwich |Fibronectin type III |automated matches |automated matches |Human (Homo sapiens) [TaxId: 9606]
d2m3ma_ : (MET318) (LYS352) [view usage] : b.36.1.1 |PDZ domain-like |PDZ domain-like |PDZ domain |automated matches |Human (Homo sapiens) [TaxId: 9606]
d1n7ta_ : (ILE13) (PRO52) [view usage] : b.36.1.1 |PDZ domain-like |PDZ domain-like |PDZ domain |Erbin |Human (Homo sapiens) [TaxId: 9606]
d2ejya_ : (VAL69) (GLY102) [view usage] : b.36.1.1 |PDZ domain-like |PDZ domain-like |PDZ domain |automated matches |Human (Homo sapiens) [TaxId: 9606]
d2cbza_ : (SER643) (GLN679) [view usage] : c.37.1.0 |P-loop containing nucleoside triphosphate hydrolases |P-loop containing nucleoside triphosphate hydrolases |automated matches |automated matches |Human (Homo sapiens) [TaxId: 9606]
d2lc6a_ : (PHE142) (ASP178) [view usage] : b.36.1.1 |PDZ domain-like |PDZ domain-like |PDZ domain |automated matches |Fruit fly (Drosophila melanogaster) [TaxId: 7227]
d1z94b_ : (LEU42) (GLY69) [view usage] : d.129.3.5 |TBP-like |Bet v1-like |AHSA1 domain |Hypothetical protein CV1439 |Chromobacterium violaceum [TaxId: 536]
d2be2b_ : (LYS46) (VAL75) [view usage] : e.8.1.2 |DNA/RNA polymerases |DNA/RNA polymerases |Reverse transcriptase |HIV-1 reverse transcriptase |Human immunodeficiency virus type 1 [TaxId: 11676]
d2azea1 : (PHE261) (ASN286) [view usage] : e.63.1.1 |E2F-DP heterodimerization region |E2F-DP heterodimerization region |DP dimerization segment |Transcription factor DP-1 |Human (Homo sapiens) [TaxId: 9606]
d1z94c_ : (LEU42) (GLY69) [view usage] : d.129.3.5 |TBP-like |Bet v1-like |AHSA1 domain |Hypothetical protein CV1439 |Chromobacterium violaceum [TaxId: 536]
d1dlpf1 : (ASN2) (MET32) [view usage] : b.78.1.1 |beta-Prism II |alpha-D-mannose-specific plant lectins |alpha-D-mannose-specific plant lectins |Fetuin-binding protein Scafet precursor |Bluebell (Scilla campanulata) [TaxId: 81759]
d1whaa_ : (SER5) (GLY48) [view usage] : b.36.1.1 |PDZ domain-like |PDZ domain-like |PDZ domain |Scribble (KIAA0147) |Human (Homo sapiens) [TaxId: 9606]
d4mdha2 : (TRP257) (GLY301) [view usage] : d.162.1.1 |LDH C-terminal domain-like |LDH C-terminal domain-like |Lactate & malate dehydrogenases, C-terminal domain |Malate dehydrogenase |Pig (Sus scrofa) [TaxId: 9823]
List of distinct SCOP folds where this concept is used (in one or more of its domains):
b.80, e.8, c.1, b.82, b.81, b.69, b.29, b.30, b.47, c.66, c.93, c.45, d.129, c.23, f.4, c.37, c.47, d.153, d.194, b.85,
b.1, b.22, b.34, d.162, b.36, b.133, b.58, b.78, e.63