Tableau information
Concept source: d2a7la1 amino acid (a.a.) range (SER29)(PHE60)
nSSEs in this Concept: 3
String of secondary struct.elems. (SSEs) defining this concept: EEE
Each SSE's a.a.range: (start resi) (end resi) SSEtype (H=Helix; E=Strand) followed by a numeric SSE ID:
(SER29) (SER33) E1
(SER33) (GLY43) E2
(PHE54) (PHE60) E3
Orientation angles° of SSE-pairs; those in contact shown in bold font
E1
E2 92.1° E2
E3 84.1° 158.4°
Footnote: Inferred from this concept's usages (listed below) was the angular variance of 1σ = ±10.4° about each orientation angle shown above.
Loci of concept usages (shown as a range of a.a. residue ids) in SCOP(v2.05) domains, along with their brief legend taken from SCOP
d1yvyb2 : (ILE1221) (GLY1242) [view usage] : c.91.1.0 |PEP carboxykinase-like |PEP carboxykinase-like |automated matches |automated matches |Anaerobiospirillum succiniciproducens [TaxId: 13335]
d2z0sa1 : (GLY118) (GLN139) [view usage] : b.40.4.5 |OB-fold |Nucleic acid-binding proteins |Cold shock DNA-binding domain-like |S1-domain of exosome complex RNA-binding protein 1, ECR1 |Aeropyrum pernix [TaxId: 56636]
d1r6za1 : (ASN686) (PRO709) [view usage] : b.34.14.1 |SH3-like barrel |PAZ domain |PAZ domain |Argonaute 2 |Fruit fly (Drosophila melanogaster) [TaxId: 7227]
d1wi5a_ : (GLY200) (GLY220) [view usage] : b.40.4.5 |OB-fold |Nucleic acid-binding proteins |Cold shock DNA-binding domain-like |S1-domain of RRP5 protein homolog (PDCD11, KIAA0185) |Human (Homo sapiens) [TaxId: 9606]
d1xtda2 : (VAL95) (ASP122) [view usage] : b.40.4.5 |OB-fold |Nucleic acid-binding proteins |Cold shock DNA-binding domain-like |C-terminal domain of eukaryotic initiation translation factor 5a (eIF5a) |Trypanosome (Leishmania mexicana) [TaxId: 5665]
d1k3ca1 : (ILE228) (GLY248) [view usage] : c.91.1.1 |PEP carboxykinase-like |PEP carboxykinase-like |PEP carboxykinase C-terminal domain |Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxaloacetate carboxy-lyase) |Escherichia coli [TaxId: 562]
d3wp6a_ : (GLY93) (VAL113) [view usage] : b.29.1.0 |Concanavalin A-like lectins/glucanases |Concanavalin A-like lectins/glucanases |automated matches |automated matches |Neocallimastix patriciarum [TaxId: 4758]
d2rj2a_ : (ASP142) (SER176) [view usage] : b.18.1.21 |Galactose-binding domain-like |Galactose-binding domain-like |F-box associated region, FBA |automated matches |Mouse (Mus musculus) [TaxId: 10090]
d1dk7a_ : (LEU317) (ASP334) [view usage] : c.8.5.1 |The "swivelling" beta/beta/alpha domain |GroEL apical domain-like |GroEL-like chaperone, apical domain |GroEL, A domain |Escherichia coli [TaxId: 562]
d1we3a2 : (LEU316) (GLY333) [view usage] : c.8.5.1 |The "swivelling" beta/beta/alpha domain |GroEL apical domain-like |GroEL-like chaperone, apical domain |GroEL, A domain |Thermus thermophilus [TaxId: 274]
d1ytma2 : (ILE221) (GLY242) [view usage] : c.91.1.0 |PEP carboxykinase-like |PEP carboxykinase-like |automated matches |automated matches |Anaerobiospirillum succiniciproducens [TaxId: 13335]
d2jexa_ : (CYS109) (ASN136) [view usage] : b.91.1.0 |E2 regulatory, transactivation domain |E2 regulatory, transactivation domain |automated matches |automated matches |Bovine papillomavirus type 1 [TaxId: 10559]
d1pk6c_ : (PHE90) (ALA114) [view usage] : b.22.1.1 |TNF-like |TNF-like |TNF-like |Complement c1q globular head, C chain |Human (Homo sapiens) [TaxId: 9606]
d1smxa_ : (GLY97) (THR117) [view usage] : b.40.4.5 |OB-fold |Nucleic acid-binding proteins |Cold shock DNA-binding domain-like |S1-domain of Ribonuclease E |Escherichia coli [TaxId: 562]
d1qabf_ : (GLY34) (GLY59) [view usage] : b.60.1.1 |Lipocalins |Lipocalins |Retinol binding protein-like |Retinol binding protein |Human (Homo sapiens) [TaxId: 9606]
d1v89a_ : (GLN48) (PRO77) [view usage] : b.55.1.1 |PH domain-like barrel |PH domain-like |Pleckstrin-homology domain (PH domain) |Rho-GTPase-activating protein 25 (KIAA0053) |Human (Homo sapiens) [TaxId: 9606]
d3bgta_ : (PRO51) (ARG87) [view usage] : d.347.1.0 |Acetoacetate decarboxylase-like |Acetoacetate decarboxylase-like |automated matches |automated matches |Chromobacterium violaceum [TaxId: 536]
d2rbca_ : (MSE90) (ASP118) [view usage] : c.72.1.0 |Ribokinase-like |Ribokinase-like |automated matches |automated matches |Agrobacterium tumefaciens [TaxId: 176299]
d2cjsb_ : (GLU95) (ASP115) [view usage] : b.7.1.1 |C2 domain-like |C2 domain (Calcium/lipid-binding domain, CaLB) |PLC-like (P variant) |automated matches |Norway rat (Rattus norvegicus) [TaxId: 10116]
d1ckva_ : (SER110) (SER127) [view usage] : d.137.1.1 |Monooxygenase (hydroxylase) regulatory protein |Monooxygenase (hydroxylase) regulatory protein |Monooxygenase (hydroxylase) regulatory protein |Soluble methane monooxygenase regulatory protein B |Escherichia coli [TaxId: 562]
d1grla2 : (LEU317) (ASP334) [view usage] : c.8.5.1 |The "swivelling" beta/beta/alpha domain |GroEL apical domain-like |GroEL-like chaperone, apical domain |GroEL, A domain |Escherichia coli [TaxId: 562]
d1g10a_ : (ALA81) (TYR97) [view usage] : d.137.1.1 |Monooxygenase (hydroxylase) regulatory protein |Monooxygenase (hydroxylase) regulatory protein |Monooxygenase (hydroxylase) regulatory protein |Toluene-4-monooxygenase catalytic effector protein |Pseudomonas mendocina [TaxId: 300]
d1assa_ : (VAL128) (GLY150) [view usage] : c.8.5.2 |The "swivelling" beta/beta/alpha domain |GroEL apical domain-like |Group II chaperonin (CCT, TRIC), apical domain |Thermosome, A-domain |Thermoplasma acidophilum, alpha chain [TaxId: 2303]
d1grha_ : (HIS122) (SER143) [view usage] : i.12.1.1 |Proteins of incorrect, partial and unknown sequence |Proteins of incorrect, partial and unknown sequence |Proteins of incorrect, partial and unknown sequence |Glutathione reductase |Human (Homo sapiens) [TaxId: 9606]
d1bhga2 : (SER164) (TYR205) [view usage] : b.18.1.5 |Galactose-binding domain-like |Galactose-binding domain-like |beta-Galactosidase/glucuronidase, N-terminal domain |beta-Glucuronidase |Human (Homo sapiens) [TaxId: 9606]
d1tuej_ : (CYS113) (ASP139) [view usage] : b.91.1.1 |E2 regulatory, transactivation domain |E2 regulatory, transactivation domain |E2 regulatory, transactivation domain |E2 regulatory, transactivation domain |Human papillomavirus type 18 [TaxId: 333761]
d1ii2a1 : (HIS201) (GLY221) [view usage] : c.91.1.1 |PEP carboxykinase-like |PEP carboxykinase-like |PEP carboxykinase C-terminal domain |Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxaloacetate carboxy-lyase) |Trypanosoma cruzi [TaxId: 5693]
d2ixqb1 : (GLY110) (SER132) [view usage] : b.2.3.6 |Common fold of diphtheria toxin/transcription factors/cytochrome f |Bacterial adhesins |Dr-family adhesin |DraA/Afimbrial adhesin Afa-III |Escherichia coli [TaxId: 562]
d1dy0a_ : (GLN279) (GLU306) [view usage] : d.169.1.5 |C-type lectin-like |C-type lectin-like |Endostatin |Endostatin |Mouse (Mus musculus) [TaxId: 10090]
d4jkma1 : (GLY124) (VAL161) [view usage] : b.18.1.0 |Galactose-binding domain-like |Galactose-binding domain-like |automated matches |automated matches |Clostridium perfringens [TaxId: 195102]
d1slja_ : (GLY97) (PHE119) [view usage] : b.40.4.5 |OB-fold |Nucleic acid-binding proteins |Cold shock DNA-binding domain-like |S1-domain of Ribonuclease E |Escherichia coli [TaxId: 562]
d2j3za1 : (GLY190) (GLY213) [view usage] : d.166.1.0 |ADP-ribosylation |ADP-ribosylation |automated matches |automated matches |Clostridium botulinum [TaxId: 1491]
d2j3zd2 : (ASN395) (ALA423) [view usage] : d.166.1.0 |ADP-ribosylation |ADP-ribosylation |automated matches |automated matches |Clostridium botulinum [TaxId: 1491]
d1xhkb_ : (GLU456) (GLU485) [view usage] : d.14.1.10 |Ribosomal protein S5 domain 2-like |Ribosomal protein S5 domain 2-like |ATP-dependent protease Lon (La), catalytic domain |ATP-dependent protease Lon (La), catalytic domain |Methanococcus jannaschii [TaxId: 2190]
d1srva_ : (LEU317) (GLY334) [view usage] : c.8.5.1 |The "swivelling" beta/beta/alpha domain |GroEL apical domain-like |GroEL-like chaperone, apical domain |GroEL, A domain |Thermus thermophilus [TaxId: 274]
List of distinct SCOP folds where this concept is used (in one or more of its domains):
b.29, c.72, b.40, d.166, b.60, b.18, d.169, d.14, b.2, d.20, d.347, c.8, b.55, b.22, b.34, b.91, i.12, d.137, c.91, b.7