Tableau information
Concept source: d3ryma_ amino acid (a.a.) range (ILE21)(ASN47)
nSSEs in this Concept: 3
String of secondary struct.elems. (SSEs) defining this concept: EEE
Each SSE's a.a.range: (start resi) (end resi) SSEtype (H=Helix; E=Strand) followed by a numeric SSE ID:
(ILE21) (LYS27) E1
(PRO33) (VAL37) E2
(ASP41) (ASN47) E3
Orientation angles° of SSE-pairs; those in contact shown in bold font
E1
E2 -168.6° E2
E3 -25.4° 152.0°
Footnote: Inferred from this concept's usages (listed below) was the angular variance of 1σ = ±9.6° about each orientation angle shown above.
Loci of concept usages (shown as a range of a.a. residue ids) in SCOP(v2.05) domains, along with their brief legend taken from SCOP
d2oq0b1 : (HIS136) (GLY162) [view usage] : b.40.16.1 |OB-fold |HIN-2000 domain-like |HIN-200/IF120x domain |Gamma-interferon-inducible protein Ifi-16 |Human (Homo sapiens) [TaxId: 9606]
d1n3ja_ : (VAL6) (GLU32) [view usage] : b.85.7.2 |beta-clip |SET domain |Viral histone H3 Lysine 27 Methyltransferase |Viral histone H3 Lysine 27 Methyltransferase |Paramecium bursaria chlorella virus 1, PBCV-1 [TaxId: 10506]
d2gcba2 : (PRO229) (PRO255) [view usage] : c.72.2.2 |Ribokinase-like |MurD-like peptide ligases, catalytic domain |Folylpolyglutamate synthetase |Folylpolyglutamate synthetase |Lactobacillus casei [TaxId: 1582]
d1jxka1 : (GLN411) (GLY438) [view usage] : b.71.1.1 |Glycosyl hydrolase domain |Glycosyl hydrolase domain |alpha-Amylases, C-terminal beta-sheet domain |Animal alpha-amylase |Human (Homo sapiens) [TaxId: 9606]
d2jena_ : (ALA29) (ASN50) [view usage] : b.29.1.0 |Concanavalin A-like lectins/glucanases |Concanavalin A-like lectins/glucanases |automated matches |automated matches |Bacillus licheniformis [TaxId: 1402]
d2ia7a1 : (LEU92) (TYR128) [view usage] : d.373.1.1 |gpW/gp25-like |gpW/gp25-like |gpW/gp25-like |Uncharacterized protein GSU0986 |Geobacter sulfurreducens [TaxId: 35554]
d3vzka_ : (ASP4) (TRP30) [view usage] : b.29.1.11 |Concanavalin A-like lectins/glucanases |Concanavalin A-like lectins/glucanases |Xylanase/endoglucanase 11/12 |Xylanase II |Bacillus circulans [TaxId: 1397]
d2z6db_ : (LYS194) (TYR239) [view usage] : d.110.3.6 |Profilin-like |PYP-like sensor domain (PAS domain) |Flavin-binding PAS domain |automated matches |Thale cress (Arabidopsis thaliana) [TaxId: 3702]
d1g8la2 : (ALA77) (MET99) [view usage] : b.103.1.1 |MoeA N-terminal region -like |MoeA N-terminal region -like |MoeA N-terminal region -like |Molybdenum cofactor biosynthesis protein MoeA, N-terminal and linker domains |Escherichia coli [TaxId: 562]
d3rgwl_ : (ASN302) (ASP338) [view usage] : e.18.1.0 |HydB/Nqo4-like |HydB/Nqo4-like |automated matches |automated matches |Ralstonia eutropha [TaxId: 381666]
d2qz3a_ : (TYR5) (TRP30) [view usage] : b.29.1.11 |Concanavalin A-like lectins/glucanases |Concanavalin A-like lectins/glucanases |Xylanase/endoglucanase 11/12 |automated matches |Bacillus subtilis [TaxId: 1423]
d2c1fa_ : (MET1) (LEU25) [view usage] : b.29.1.0 |Concanavalin A-like lectins/glucanases |Concanavalin A-like lectins/glucanases |automated matches |automated matches |Neocallimastix patriciarum [TaxId: 4758]
d1n6ca1 : (GLY80) (ASP112) [view usage] : b.76.2.1 |open-sided beta-meander |Histone H3 K4-specific methyltransferase SET7/9 N-terminal domain |Histone H3 K4-specific methyltransferase SET7/9 N-terminal domain |Histone H3 K4-specific methyltransferase SET7/9 N-terminal domain |Human (Homo sapiens) [TaxId: 9606]
d2p49b_ : (VAL48) (ARG72) [view usage] : b.1.1.1 |Immunoglobulin-like beta-sandwich |Immunoglobulin |V set domains (antibody variable domain-like) |automated matches |Camel (Camelus dromedarius) [TaxId: 9838]
d2bw8a_ : (THR2) (GLY27) [view usage] : b.29.1.11 |Concanavalin A-like lectins/glucanases |Concanavalin A-like lectins/glucanases |Xylanase/endoglucanase 11/12 |Family 12 endo-1,4-beta-glucanase (cellulase) catalytic domain |Rhodothermus marinus [TaxId: 29549]
d1hf2b1 : (LYS102) (PHE123) [view usage] : b.80.3.1 |Single-stranded right-handed beta-helix |Cell-division inhibitor MinC, C-terminal domain |Cell-division inhibitor MinC, C-terminal domain |Cell-division inhibitor MinC, C-terminal domain |Thermotoga maritima [TaxId: 2336]
d2dcza_ : (TYR5) (TRP30) [view usage] : b.29.1.11 |Concanavalin A-like lectins/glucanases |Concanavalin A-like lectins/glucanases |Xylanase/endoglucanase 11/12 |Xylanase II |Bacillus circulans [TaxId: 1397]
d2e1ba1 : (ILE36) (ASP58) [view usage] : b.43.3.6 |Reductase/isomerase/elongation factor common domain |Translation proteins |AlaX-M N-terminal domain-like |AlaX-M trans-editing enzyme, N-terminal domain |Pyrococcus horikoshii [TaxId: 53953]
d1oyga_ : (ALA309) (LYS348) [view usage] : b.67.2.2 |5-bladed beta-propeller |Arabinanase/levansucrase/invertase |Levansucrase |Levansucrase |Bacillus subtilis [TaxId: 1423]
d2gcaa2 : (PRO229) (PRO255) [view usage] : c.72.2.2 |Ribokinase-like |MurD-like peptide ligases, catalytic domain |Folylpolyglutamate synthetase |Folylpolyglutamate synthetase |Lactobacillus casei [TaxId: 1582]
d3vysa_ : (ILE10) (GLU27) [view usage] : b.40.14.1 |OB-fold |HupF/HypC-like |HupF/HypC-like |Hydrogenase expression/formation protein HypC |Thermococcus kodakaraensis [TaxId: 311400]
d1byna_ : (LEU224) (SER264) [view usage] : b.7.1.2 |C2 domain-like |C2 domain (Calcium/lipid-binding domain, CaLB) |Synaptotagmin-like (S variant) |Synaptogamin I |Norway rat (Rattus norvegicus) [TaxId: 10116]
d3kt3c_ : (GLU24) (TYR47) [view usage] : c.26.1.1 |Adenine nucleotide alpha hydrolase-like |Nucleotidylyl transferase |Class I aminoacyl-tRNA synthetases (RS), catalytic domain |Tryptophanyl-tRNA synthetase (TrpRS) |Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
d1oa4a_ : (ASN1) (ASN21) [view usage] : b.29.1.11 |Concanavalin A-like lectins/glucanases |Concanavalin A-like lectins/glucanases |Xylanase/endoglucanase 11/12 |Family 12 endo-1,4-beta-glucanase (cellulase) catalytic domain |Streptomyces sp. 11ag8 [TaxId: 133452]
d4tx6b_ : (TRP72) (LYS95) [view usage] : c.1.8.0 |TIM beta/alpha-barrel |(Trans)glycosidases |automated matches |automated matches |Aspergillus fumigatus [TaxId: 451804]
d4l1ya_ : (ALA245) (LEU282) [view usage] : d.151.1.2 |DNase I-like |DNase I-like |Inositol polyphosphate 5-phosphatase (IPP5) |automated matches |Bedbug (Cimex lectularius) [TaxId: 79782]
d2vg9a_ : (MET1) (GLY27) [view usage] : b.29.1.0 |Concanavalin A-like lectins/glucanases |Concanavalin A-like lectins/glucanases |automated matches |automated matches |Neocallimastix patriciarum [TaxId: 4758]
d3djnb_ : (GLU99) (TYR123) [view usage] : d.370.1.1 |BTG domain-like |BTG domain-like |BTG domain-like |automated matches |Mouse (Mus musculus) [TaxId: 10090]
d2bbaa1 : (ALA28) (ASP62) [view usage] : b.18.1.4 |Galactose-binding domain-like |Galactose-binding domain-like |Ephrin receptor ligand binding domain |Ephrin type-B receptor 4 |Human (Homo sapiens) [TaxId: 9606]
d1ojna2 : (THR860) (LEU890) [view usage] : b.24.1.1 |Hyaluronate lyase-like, C-terminal domain |Hyaluronate lyase-like, C-terminal domain |Hyaluronate lyase-like, C-terminal domain |Hyaluronate lyase |Pneumococcus (Streptococcus pneumoniae) [TaxId: 1313]
d1bcxa_ : (ASP4) (ASN32) [view usage] : b.29.1.11 |Concanavalin A-like lectins/glucanases |Concanavalin A-like lectins/glucanases |Xylanase/endoglucanase 11/12 |Xylanase II |Bacillus circulans [TaxId: 1397]
d2qr8a_ : (ILE428) (ASP454) [view usage] : d.144.1.0 |Protein kinase-like (PK-like) |Protein kinase-like (PK-like) |automated matches |automated matches |Mouse (Mus musculus) [TaxId: 10090]
d1sppa_ : (LEU4) (THR22) [view usage] : b.23.1.1 |CUB-like |Spermadhesin, CUB domain |Spermadhesin, CUB domain |Major seminal plasma glycoprotein PSP-I |Pig (Sus scrofa) [TaxId: 9823]
d1sy7a1 : (GLN670) (LYS690) [view usage] : c.23.16.3 |Flavodoxin-like |Class I glutamine amidotransferase-like |Catalase, C-terminal domain |Catalase, C-terminal domain |Fungus (Neurospora crassa) [TaxId: 5141]
d2gpra_ : (VAL61) (ILE84) [view usage] : b.84.3.1 |Barrel-sandwich hybrid |Duplicated hybrid motif |Glucose permease-like |Glucose permease IIa domain, IIa-glc |Mycoplasma capricolum [TaxId: 2095]
d2ux6a_ : (ALA1) (PRO35) [view usage] : b.6.1.1 |Cupredoxin-like |Cupredoxins |Plastocyanin/azurin-like |automated matches |Achromobacter cycloclastes [TaxId: 223]
d3n5md_ : (ALA33) (LEU49) [view usage] : c.67.1.0 |PLP-dependent transferase-like |PLP-dependent transferases |automated matches |automated matches |Anthrax bacillus (Bacillus anthracis) [TaxId: 1392]
d1bzqk_ : (GLN801) (TYR833) [view usage] : b.1.1.1 |Immunoglobulin-like beta-sandwich |Immunoglobulin |V set domains (antibody variable domain-like) |Camelid IG heavy chain variable domain, VHh |Camel (Camelus dromedarius) [TaxId: 9838]
d1txoa_ : (LEU6) (GLY42) [view usage] : d.219.1.1 |PP2C-like |PP2C-like |PP2C-like |putative serine/threonine phosphatase pstp/ppp |Mycobacterium tuberculosis [TaxId: 1773]
d3wx5a_ : (PRO35) (ASN57) [view usage] : b.29.1.11 |Concanavalin A-like lectins/glucanases |Concanavalin A-like lectins/glucanases |Xylanase/endoglucanase 11/12 |automated matches |Uncultured bacterium [TaxId: 77133]
d2eb6a_ : (ARG242) (VAL267) [view usage] : d.177.1.0 |FAH |FAH |automated matches |automated matches |Escherichia coli [TaxId: 562]
d2wqta_ : (PRO235) (PHE259) [view usage] : d.177.1.1 |FAH |FAH |FAH |automated matches |Escherichia coli K-12 [TaxId: 83333]
d1xgza1 : (GLN416) (GLY443) [view usage] : b.71.1.0 |Glycosyl hydrolase domain |Glycosyl hydrolase domain |automated matches |automated matches |Human (Homo sapiens) [TaxId: 9606]
d3kt3b_ : (GLU24) (TYR47) [view usage] : c.26.1.1 |Adenine nucleotide alpha hydrolase-like |Nucleotidylyl transferase |Class I aminoacyl-tRNA synthetases (RS), catalytic domain |Tryptophanyl-tRNA synthetase (TrpRS) |Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
d1m3ja_ : (TYR381) (TRP428) [view usage] : f.9.1.1 |Perfringolysin |Perfringolysin |Perfringolysin |Perfringolysin |Clostridium perfringens [TaxId: 1502]
d2cbna1 : (ILE126) (GLU152) [view usage] : d.157.1.7 |Metallo-hydrolase/oxidoreductase |Metallo-hydrolase/oxidoreductase |RNase Z-like |Ribonuclease Z (RNase Z) |Escherichia coli [TaxId: 562]
d1hf2a1 : (LYS102) (PHE123) [view usage] : b.80.3.1 |Single-stranded right-handed beta-helix |Cell-division inhibitor MinC, C-terminal domain |Cell-division inhibitor MinC, C-terminal domain |Cell-division inhibitor MinC, C-terminal domain |Thermotoga maritima [TaxId: 2336]
d2b6ea_ : (ILE105) (ASN137) [view usage] : d.38.1.5 |Thioesterase/thiol ester dehydrase-isomerase |Thioesterase/thiol ester dehydrase-isomerase |PaaI/YdiI-like |automated matches |Haemophilus influenzae [TaxId: 727]
d2b45x_ : (ASP4) (TRP30) [view usage] : b.29.1.11 |Concanavalin A-like lectins/glucanases |Concanavalin A-like lectins/glucanases |Xylanase/endoglucanase 11/12 |Xylanase II |Bacillus circulans [TaxId: 1397]
d1olra_ : (ILE2) (ASN21) [view usage] : b.29.1.11 |Concanavalin A-like lectins/glucanases |Concanavalin A-like lectins/glucanases |Xylanase/endoglucanase 11/12 |Family 12 endo-1,4-beta-glucanase (cellulase) catalytic domain |Humicola grisea [TaxId: 5527]
d2p4ab_ : (GLN1) (TYR33) [view usage] : b.1.1.1 |Immunoglobulin-like beta-sandwich |Immunoglobulin |V set domains (antibody variable domain-like) |automated matches |Camel (Camelus dromedarius) [TaxId: 9838]
d1h0ba_ : (THR2) (ASN23) [view usage] : b.29.1.11 |Concanavalin A-like lectins/glucanases |Concanavalin A-like lectins/glucanases |Xylanase/endoglucanase 11/12 |Family 12 endo-1,4-beta-glucanase (cellulase) catalytic domain |Rhodothermus marinus [TaxId: 29549]
d3cama_ : (LYS7) (PHE31) [view usage] : b.40.4.5 |OB-fold |Nucleic acid-binding proteins |Cold shock DNA-binding domain-like |automated matches |Neisseria meningitidis [TaxId: 122586]
d2dl9a_ : (MET11) (PRO42) [view usage] : b.1.1.0 |Immunoglobulin-like beta-sandwich |Immunoglobulin |automated matches |automated matches |Human (Homo sapiens) [TaxId: 9606]
d1axka2 : (ASP160) (TRP186) [view usage] : b.29.1.11 |Concanavalin A-like lectins/glucanases |Concanavalin A-like lectins/glucanases |Xylanase/endoglucanase 11/12 |Xylanase II |Bacillus subtilis [TaxId: 1423]
d1mwka2 : (ASP164) (SER196) [view usage] : c.55.1.1 |Ribonuclease H-like motif |Actin-like ATPase domain |Actin/HSP70 |Plasmid segregation protein ParM |Escherichia coli [TaxId: 562]
d4i65a_ : (ILE15) (LEU36) [view usage] : b.40.1.1 |OB-fold |Staphylococcal nuclease |Staphylococcal nuclease |Staphylococcal nuclease |Staphylococcus aureus [TaxId: 1280]
d2gp3b_ : (GLY265) (ARG294) [view usage] : b.82.2.14 |Double-stranded beta-helix |Clavaminate synthase-like |Histone demethylase core |JMJD2A core |Human (Homo sapiens) [TaxId: 9606]
d1sv6a_ : (PRO235) (PHE259) [view usage] : d.177.1.1 |FAH |FAH |FAH |2-keto-4-pentenoate hydratase MhpD |Escherichia coli [TaxId: 562]
d3ul5d_ : (GLY63) (GLY104) [view usage] : d.17.1.0 |Cystatin-like |Cystatin/monellin |automated matches |automated matches |Saccharum officinarum [TaxId: 4547]
d3dxta_ : (GLY269) (PRO298) [view usage] : b.82.2.14 |Double-stranded beta-helix |Clavaminate synthase-like |Histone demethylase core |automated matches |Human (Homo sapiens) [TaxId: 9606]
List of distinct SCOP folds where this concept is used (in one or more of its domains):
b.80, c.1, b.82, c.67, b.29, c.26, b.67, d.157, b.76, e.18, c.72, c.23, d.144, b.40, c.55, d.151, b.18, b.6, b.85, b.1,
d.110, d.17, d.38, b.84, d.177, d.219, b.7, b.43, b.71, b.24, b.23, f.9, d.370, b.103, d.373