Tableau information
Concept source: d1c1aa2 amino acid (a.a.) range (ALA72)(ASP82)
nSSEs in this Concept: 2
String of secondary struct.elems. (SSEs) defining this concept: HE
Each SSE's a.a.range: (start resi) (end resi) SSEtype (H=Helix; E=Strand) followed by a numeric SSE ID:
(ALA72) (ALA78) H1
(ALA78) (ASP82) E2
Orientation angles° of SSE-pairs; those in contact shown in bold font
H1
E2 -31.9°
Footnote: Inferred from this concept's usages (listed below) was the angular variance of 1σ = ±4.6° about each orientation angle shown above.
Loci of concept usages (shown as a range of a.a. residue ids) in SCOP(v2.05) domains, along with their brief legend taken from SCOP
d2vpqb3 : (THR395) (GLY414) [view usage] : b.84.2.0 |Barrel-sandwich hybrid |Rudiment single hybrid motif |automated matches |automated matches |Staphylococcus aureus [TaxId: 1280]
d1vzva_ : (TYR184) (SER194) [view usage] : b.57.1.1 |Herpes virus serine proteinase, assemblin |Herpes virus serine proteinase, assemblin |Herpes virus serine proteinase, assemblin |VZV protease |Varicella-Zoster virus [TaxId: 10335]
d2zhra_ : (PHE-1) (GLY8) [view usage] : b.50.1.2 |Acid proteases |Acid proteases |Pepsin-like |beta-secretase (memapsin) |Human (Homo sapiens) [TaxId: 9606]
d1ac0a_ : (CYS604) (ARG616) [view usage] : b.3.1.1 |Prealbumin-like |Starch-binding domain-like |Starch-binding domain |Glucoamylase, granular starch-binding domain |Aspergillus niger [TaxId: 5061]
d4k6hb_ : (LYS13) (GLN23) [view usage] : c.69.1.17 |alpha/beta-Hydrolases |alpha/beta-Hydrolases |Fungal lipases |automated matches |Candida antarctica [TaxId: 34362]
d1gbja_ : (PRO222) (GLU229) [view usage] : b.47.1.1 |Trypsin-like serine proteases |Trypsin-like serine proteases |Prokaryotic proteases |alpha-Lytic protease |Lysobacter enzymogenes, 495 [TaxId: 69]
d1hsba1 : (SER251) (HIS263) [view usage] : b.1.1.2 |Immunoglobulin-like beta-sandwich |Immunoglobulin |C1 set domains (antibody constant domain-like) |Class I MHC, alpha-3 domain |Human (Homo sapiens) [TaxId: 9606]
d1dypa_ : (SER278) (VAL295) [view usage] : b.29.1.2 |Concanavalin A-like lectins/glucanases |Concanavalin A-like lectins/glucanases |Glycosyl hydrolases family 16 |kappa-Carrageenase, catalytic |Pseudoalteromonas carrageenovora [TaxId: 227]
d1lbsa_ : (LYS13) (GLN23) [view usage] : c.69.1.17 |alpha/beta-Hydrolases |alpha/beta-Hydrolases |Fungal lipases |Triacylglycerol lipase |Yeast (Candida antarctica), form b [TaxId: 34362]
d1w9xa2 : (VAL291) (VAL329) [view usage] : c.1.8.1 |TIM beta/alpha-barrel |(Trans)glycosidases |Amylase, catalytic domain |Bacterial alpha-amylase |Bacillus halmapalus [TaxId: 79882]
d2j6xc_ : (VAL357) (PRO369) [view usage] : c.1.4.0 |TIM beta/alpha-barrel |FMN-linked oxidoreductases |automated matches |automated matches |Aerococcus viridans [TaxId: 1377]
d3r5vd_ : (GLU12) (ILE21) [view usage] : b.40.5.1 |OB-fold |Inorganic pyrophosphatase |Inorganic pyrophosphatase |automated matches |Thermococcus thioreducens [TaxId: 277988]
d4bpfa_ : (LEU77) (HIS85) [view usage] : a.28.1.0 |Acyl carrier protein-like |ACP-like |automated matches |automated matches |Bacillus subtilis [TaxId: 1423]
d2vk1a1 : (PRO168) (PRO177) [view usage] : c.36.1.0 |Thiamin diphosphate-binding fold (THDP-binding) |Thiamin diphosphate-binding fold (THDP-binding) |automated matches |automated matches |Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
d1fpn1_ : (SER66) (VAL84) [view usage] : b.121.4.1 |Nucleoplasmin-like/VP (viral coat and capsid proteins) |Positive stranded ssRNA viruses |Picornaviridae-like VP (VP1, VP2, VP3 and VP4) |Rhinovirus coat proteins |Human rhinovirus A 2 (HRV-2) [TaxId: 12130]
d4eq3a2 : (ARG134) (ASN148) [view usage] : b.1.2.0 |Immunoglobulin-like beta-sandwich |Fibronectin type III |automated matches |automated matches |Chicken (Gallus gallus) [TaxId: 9031]
d8prka_ : (ASP273) (ILE282) [view usage] : b.40.5.1 |OB-fold |Inorganic pyrophosphatase |Inorganic pyrophosphatase |Inorganic pyrophosphatase |Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
d2e9ja_ : (ILE103) (THR115) [view usage] : b.1.18.10 |Immunoglobulin-like beta-sandwich |E set domains |Filamin repeat (rod domain) |Filamin b |Human (Homo sapiens) [TaxId: 9606]
d3q5vb_ : (GLU12) (ILE21) [view usage] : b.40.5.1 |OB-fold |Inorganic pyrophosphatase |Inorganic pyrophosphatase |automated matches |Thermococcus thioreducens [TaxId: 277988]
d2pw0b1 : (THR68) (HIS79) [view usage] : d.21.1.0 |Diaminopimelate epimerase-like |Diaminopimelate epimerase-like |automated matches |automated matches |Shewanella oneidensis [TaxId: 70863]
d4mzoa_ : (GLY330) (ILE340) [view usage] : d.3.1.1 |Cysteine proteinases |Cysteine proteinases |Papain-like |automated matches |Mouse (Mus musculus) [TaxId: 10090]
d2k7qa2 : (VAL2125) (GLY2136) [view usage] : b.1.18.0 |Immunoglobulin-like beta-sandwich |E set domains |automated matches |automated matches |Human (Homo sapiens) [TaxId: 9606]
d3ssse_ : (GLU98) (HIS108) [view usage] : d.58.56.1 |Ferredoxin-like |CcmK-like |CcmK-like |automated matches |Thermosynechococcus elongatus [TaxId: 197221]
d4ohja1 : (ASP44) (THR61) [view usage] : b.40.2.2 |OB-fold |Bacterial enterotoxins |Superantigen toxins, N-terminal domain |automated matches |Staphylococcus aureus [TaxId: 1280]
d3tssa1 : (ASN5) (THR21) [view usage] : b.40.2.2 |OB-fold |Bacterial enterotoxins |Superantigen toxins, N-terminal domain |Toxic shock syndrome toxin-1 (TSST-1) |Staphylococcus aureus [TaxId: 1280]
d1cov1_ : (THR63) (GLU80) [view usage] : b.121.4.1 |Nucleoplasmin-like/VP (viral coat and capsid proteins) |Positive stranded ssRNA viruses |Picornaviridae-like VP (VP1, VP2, VP3 and VP4) |Human enterovirus B coat proteins |Human coxsackievirus B3 [TaxId: 12072]
d3of8a_ : (GLY211) (VAL221) [view usage] : d.3.1.0 |Cysteine proteinases |Cysteine proteinases |automated matches |automated matches |Human (Homo sapiens) [TaxId: 9606]
d1g1ba_ : (HIS2) (GLU16) [view usage] : d.190.1.1 |Chorismate lyase-like |Chorismate lyase-like |Chorismate lyase |Chorismate lyase |Escherichia coli [TaxId: 562]
d1jd3a_ : (HIS2) (LYS15) [view usage] : d.190.1.1 |Chorismate lyase-like |Chorismate lyase-like |Chorismate lyase |Chorismate lyase |Escherichia coli [TaxId: 562]
d1bcpd_ : (SER43) (GLY53) [view usage] : b.40.2.1 |OB-fold |Bacterial enterotoxins |Bacterial AB5 toxins, B-subunits |Pertussis toxin S4 subunit |Bordetella pertussis [TaxId: 520]
d2doua_ : (LEU294) (ARG318) [view usage] : c.67.1.0 |PLP-dependent transferase-like |PLP-dependent transferases |automated matches |automated matches |Thermus thermophilus HB8 [TaxId: 300852]
d2jzra_ : (PRO3) (ALA12) [view usage] : c.47.1.10 |Thioredoxin fold |Thioredoxin-like |Glutathione peroxidase-like |Peptide methionine sulfoxide reductase MsrA/MsrB, N-terminal domain |Neisseria meningitidis serogroup A [TaxId: 65699]
d1p4ca_ : (TYR35) (ARG53) [view usage] : c.1.4.1 |TIM beta/alpha-barrel |FMN-linked oxidoreductases |FMN-linked oxidoreductases |Membrane-associated (S)-mandelate dehydrogenase |Pseudomonas putida [TaxId: 303]
d1sr4a_ : (PRO71) (GLY82) [view usage] : b.42.2.1 |beta-Trefoil |Ricin B-like lectins |Ricin B-like |Cytolethal distending toxin subunit A |Haemophilus ducreyi [TaxId: 730]
d3eyza2 : (GLN470) (LYS498) [view usage] : e.8.1.1 |DNA/RNA polymerases |DNA/RNA polymerases |DNA polymerase I |DNA polymerase I (Klenow fragment) |Bacillus stearothermophilus, newly identified strain as yet unnamed [TaxId: 1422]
d2d7oa1 : (ALA8) (GLY18) [view usage] : b.1.18.10 |Immunoglobulin-like beta-sandwich |E set domains |Filamin repeat (rod domain) |Filamin C |Human (Homo sapiens) [TaxId: 9606]
d2wuda_ : (THR8) (GLU17) [view usage] : c.69.1.0 |alpha/beta-Hydrolases |alpha/beta-Hydrolases |automated matches |automated matches |Mycobacterium tuberculosis [TaxId: 83332]
d4h69e_ : (GLY-4) (ASN20) [view usage] : b.159.1.0 |AOC barrel-like |Allene oxide cyclase-like |automated matches |automated matches |Physcomitrella patens [TaxId: 145481]
d2f7da1 : (GLY201) (MET211) [view usage] : d.3.1.1 |Cysteine proteinases |Cysteine proteinases |Papain-like |(Pro)cathepsin K |Rabbit (Oryctolagus cuniculus) [TaxId: 9986]
d1qksa2 : (LYS140) (VAL150) [view usage] : b.70.2.1 |8-bladed beta-propeller |C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase |C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase |C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase |Paracoccus denitrificans [TaxId: 266]
d3le2a_ : (ALA131) (GLY175) [view usage] : e.1.1.0 |Serpins |Serpins |automated matches |automated matches |Thale cress (Arabidopsis thaliana) [TaxId: 3702]
d1gbaa_ : (PRO222) (GLU229) [view usage] : b.47.1.1 |Trypsin-like serine proteases |Trypsin-like serine proteases |Prokaryotic proteases |alpha-Lytic protease |Lysobacter enzymogenes, 495 [TaxId: 69]
d2gt4a_ : (ASP121) (THR131) [view usage] : d.113.1.5 |Nudix |Nudix |GDP-mannose mannosyl hydrolase NudD |GDP-mannose mannosyl hydrolase NudD |Escherichia coli [TaxId: 562]
d1w85c_ : (PRO8) (ILE25) [view usage] : c.36.1.11 |Thiamin diphosphate-binding fold (THDP-binding) |Thiamin diphosphate-binding fold (THDP-binding) |Branched-chain alpha-keto acid dehydrogenase PP module |Pyruvate dehydrogenase E1-alpha, PdhA |Bacillus stearothermophilus [TaxId: 1422]
d3f1wa2 : (PRO191) (ASP200) [view usage] : d.131.1.2 |DNA clamp |DNA clamp |DNA polymerase processivity factor |Proliferating cell nuclear antigen (PCNA) |Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
d2fc7a1 : (LYS65) (TYR74) [view usage] : g.44.1.6 |RING/U-box |RING/U-box |ZZ domain |Zinc finger ZZ-type-containing protein 3, ZZZ3 |Human (Homo sapiens) [TaxId: 9606]
d4k6gb_ : (LYS13) (GLN23) [view usage] : c.69.1.17 |alpha/beta-Hydrolases |alpha/beta-Hydrolases |Fungal lipases |automated matches |Candida antarctica [TaxId: 34362]
d1f7ua3 : (SER51) (THR63) [view usage] : d.67.2.1 |RRF/tRNA synthetase additional domain-like |Arginyl-tRNA synthetase (ArgRS), N-terminal 'additional' domain |Arginyl-tRNA synthetase (ArgRS), N-terminal 'additional' domain |Arginyl-tRNA synthetase (ArgRS), N-terminal 'additional' domain |Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
d2eiyb_ : (GLU132) (THR143) [view usage] : e.17.1.0 |D-aminoacid aminotransferase-like PLP-dependent enzymes |D-aminoacid aminotransferase-like PLP-dependent enzymes |automated matches |automated matches |Thermus thermophilus HB8 [TaxId: 300852]
d1vbma_ : (CYS116) (ASN125) [view usage] : c.26.1.1 |Adenine nucleotide alpha hydrolase-like |Nucleotidylyl transferase |Class I aminoacyl-tRNA synthetases (RS), catalytic domain |automated matches |Escherichia coli [TaxId: 562]
d4l6pa2 : (PRO191) (ASP200) [view usage] : d.131.1.2 |DNA clamp |DNA clamp |DNA polymerase processivity factor |automated matches |Baker's yeast (Saccharomyces cerevisiae) [TaxId: 559292]
d1aw7a1 : (ASP4) (ASN22) [view usage] : b.40.2.2 |OB-fold |Bacterial enterotoxins |Superantigen toxins, N-terminal domain |Toxic shock syndrome toxin-1 (TSST-1) |Staphylococcus aureus [TaxId: 1280]
d1uija1 : (GLU44) (LYS57) [view usage] : b.82.1.2 |Double-stranded beta-helix |RmlC-like cupins |Germin/Seed storage 7S protein |Seed storage 7S protein |Soybean (Glycine max), beta-conglycinin beta subunit [TaxId: 3847]
d2j3sa3 : (VAL2125) (THR2135) [view usage] : b.1.18.0 |Immunoglobulin-like beta-sandwich |E set domains |automated matches |automated matches |Human (Homo sapiens) [TaxId: 9606]
d1rm6a1 : (GLU113) (TYR127) [view usage] : d.41.1.1 |alpha/beta-Hammerhead |CO dehydrogenase molybdoprotein N-domain-like |CO dehydrogenase molybdoprotein N-domain-like |4-hydroxybenzoyl-CoA reductase alpha subunit HrcA, N-terminal domain |Thauera aromatica [TaxId: 59405]
d1n06b_ : (GLN19) (LYS29) [view usage] : b.43.5.1 |Reductase/isomerase/elongation factor common domain |Riboflavin kinase-like |ATP-dependent riboflavin kinase-like |Riboflavin kinase |Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]
d1e9gb_ : (ASP273) (SER283) [view usage] : b.40.5.1 |OB-fold |Inorganic pyrophosphatase |Inorganic pyrophosphatase |Inorganic pyrophosphatase |Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
d1ko9a2 : (THR19) (PRO27) [view usage] : d.129.1.2 |TBP-like |TATA-box binding protein-like |DNA repair glycosylase, N-terminal domain |8-oxoguanine glycosylase |Human (Homo sapiens) [TaxId: 9606]
d4reqa1 : (PHE280) (MET292) [view usage] : c.1.19.1 |TIM beta/alpha-barrel |Cobalamin (vitamin B12)-dependent enzymes |Methylmalonyl-CoA mutase, N-terminal (CoA-binding) domain |Methylmalonyl-CoA mutase alpha subunit, domain 1 |Propionibacterium freudenreichii, subsp. shermanii [TaxId: 1744]
d2vf2a_ : (THR8) (GLU17) [view usage] : c.69.1.0 |alpha/beta-Hydrolases |alpha/beta-Hydrolases |automated matches |automated matches |Mycobacterium tuberculosis [TaxId: 83332]
d3zfzb3 : (GLU511) (ASN527) [view usage] : e.3.1.1 |beta-lactamase/transpeptidase-like |beta-lactamase/transpeptidase-like |beta-Lactamase/D-ala carboxypeptidase |automated matches |Staphylococcus aureus [TaxId: 158878]
d1jdea3 : (GLY248) (ALA256) [view usage] : d.142.1.5 |ATP-grasp |Glutathione synthetase ATP-binding domain-like |Pyruvate phosphate dikinase, N-terminal domain |Pyruvate phosphate dikinase, N-terminal domain |Clostridium symbiosum [TaxId: 1512]
d2ooxa1 : (ARG491) (GLU502) [view usage] : d.129.6.2 |TBP-like |KA1-like |Ssp2 C-terminal domain-like |Snf1-like protein kinase ssp2 |Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]
d1vw4g_ : (SER10) (GLN22) [view usage] : i.1.1.2 |Ribosome and ribosomal fragments |Ribosome and ribosomal fragments |Large subunit |Eukaryotic, mitochondrial (54S or 39S subunit) |Saccharomyces cerevisiae [TaxId: 4932]
d2d7ma1 : (ILE93) (PRO104) [view usage] : b.1.18.10 |Immunoglobulin-like beta-sandwich |E set domains |Filamin repeat (rod domain) |Filamin C |Human (Homo sapiens) [TaxId: 9606]
d3hlaa1 : (SER251) (HIS263) [view usage] : b.1.1.2 |Immunoglobulin-like beta-sandwich |Immunoglobulin |C1 set domains (antibody constant domain-like) |Class I MHC, alpha-3 domain |Human (Homo sapiens) [TaxId: 9606]
d1v1qa_ : (PRO-4) (SER8) [view usage] : b.40.4.3 |OB-fold |Nucleic acid-binding proteins |Single strand DNA-binding domain, SSB |Primosomal replication protein N, PriB |Escherichia coli [TaxId: 562]
d3ouua3 : (ARG395) (GLY413) [view usage] : b.84.2.0 |Barrel-sandwich hybrid |Rudiment single hybrid motif |automated matches |automated matches |Campylobacter jejuni [TaxId: 192222]
d3lf6a_ : (ASN7) (ARG16) [view usage] : d.112.1.1 |Phoshotransferase/anion transport protein |Phoshotransferase/anion transport protein |IIA domain of mannitol-specific and ntr phosphotransferase EII |automated matches |Artificial gene [TaxId: 32630]
d3dtfa_ : (GLY339) (ASN368) [view usage] : e.17.1.0 |D-aminoacid aminotransferase-like PLP-dependent enzymes |D-aminoacid aminotransferase-like PLP-dependent enzymes |automated matches |automated matches |Mycobacterium smegmatis [TaxId: 246196]
d2vpqa3 : (THR395) (GLY414) [view usage] : b.84.2.0 |Barrel-sandwich hybrid |Rudiment single hybrid motif |automated matches |automated matches |Staphylococcus aureus [TaxId: 1280]
d1nmoa_ : (GLY107) (GLY131) [view usage] : c.135.1.1 |NIF3 (NGG1p interacting factor 3)-like |NIF3 (NGG1p interacting factor 3)-like |NIF3 (NGG1p interacting factor 3)-like |Hypothetical protein YbgI |Escherichia coli [TaxId: 562]
d2bfvl_ : (ASN32) (PRO45) [view usage] : b.1.1.1 |Immunoglobulin-like beta-sandwich |Immunoglobulin |V set domains (antibody variable domain-like) |Immunoglobulin light chain kappa variable domain, VL-kappa |Mouse (Mus musculus), cluster 1.1 [TaxId: 10090]
d1h16a_ : (THR743) (SER758) [view usage] : c.7.1.1 |PFL-like glycyl radical enzymes |PFL-like glycyl radical enzymes |PFL-like |Pyruvate formate-lyase, PFL |Escherichia coli [TaxId: 562]
d2z8la1 : (ASP13) (LYS29) [view usage] : b.40.2.2 |OB-fold |Bacterial enterotoxins |Superantigen toxins, N-terminal domain |Superantigen-like protein SET3 |Staphylococcus aureus [TaxId: 1280]
d1dyqa1 : (ALA22) (GLU39) [view usage] : b.40.2.2 |OB-fold |Bacterial enterotoxins |Superantigen toxins, N-terminal domain |Staphylococcal enterotoxin A, SEA |Staphylococcus aureus [TaxId: 1280]
d1hzua2 : (PRO122) (VAL132) [view usage] : b.70.2.1 |8-bladed beta-propeller |C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase |C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase |C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase |Pseudomonas aeruginosa [TaxId: 287]
d2eeda_ : (ILE91) (PRO101) [view usage] : b.1.18.10 |Immunoglobulin-like beta-sandwich |E set domains |Filamin repeat (rod domain) |Filamin b |Human (Homo sapiens) [TaxId: 9606]
d1dyra_ : (SER48) (GLY58) [view usage] : c.71.1.1 |Dihydrofolate reductase-like |Dihydrofolate reductase-like |Dihydrofolate reductases |Dihydrofolate reductases, eukaryotic type |Fungus (Pneumocystis carinii) [TaxId: 4754]
d3dvaa_ : (PRO8) (LEU26) [view usage] : c.36.1.11 |Thiamin diphosphate-binding fold (THDP-binding) |Thiamin diphosphate-binding fold (THDP-binding) |Branched-chain alpha-keto acid dehydrogenase PP module |automated matches |Bacillus stearothermophilus [TaxId: 1422]
d1v1qb_ : (PRO-4) (SER8) [view usage] : b.40.4.3 |OB-fold |Nucleic acid-binding proteins |Single strand DNA-binding domain, SSB |Primosomal replication protein N, PriB |Escherichia coli [TaxId: 562]
d1vsna1 : (GLY201) (MET211) [view usage] : d.3.1.1 |Cysteine proteinases |Cysteine proteinases |Papain-like |(Pro)cathepsin K |Human (Homo sapiens) [TaxId: 9606]
d2izpb_ : (ARG2047) (PRO2067) [view usage] : a.250.1.1 |IpaD-like |IpaD-like |IpaD-like |Putative membrane antigen BipD |Burkholderia pseudomallei [TaxId: 28450]
d1ar61_ : (SER76) (ASN94) [view usage] : b.121.4.1 |Nucleoplasmin-like/VP (viral coat and capsid proteins) |Positive stranded ssRNA viruses |Picornaviridae-like VP (VP1, VP2, VP3 and VP4) |Poliovirus coat proteins |Poliovirus type 1, strain Mahoney [TaxId: 12080]
d3gpna2 : (PRO191) (ASP200) [view usage] : d.131.1.2 |DNA clamp |DNA clamp |DNA polymerase processivity factor |automated matches |Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
d3r2ta2 : (SER129) (ASN138) [view usage] : d.15.6.0 |beta-Grasp (ubiquitin-like) |Superantigen toxins, C-terminal domain |automated matches |automated matches |Staphylococcus aureus [TaxId: 93061]
d3i98a_ : (GLU12) (ILE21) [view usage] : b.40.5.1 |OB-fold |Inorganic pyrophosphatase |Inorganic pyrophosphatase |automated matches |Thermococcus thioreducens [TaxId: 277988]
d1bf8a2 : (GLN126) (ALA137) [view usage] : b.7.2.1 |C2 domain-like |Periplasmic chaperone C-domain |Periplasmic chaperone C-domain |FimC |Escherichia coli [TaxId: 562]
d3l8qa1 : (MET1) (ASP12) [view usage] : b.2.2.2 |Common fold of diphtheria toxin/transcription factors/cytochrome f |Carbohydrate-binding domain |Cellulose-binding domain family III |Cellulosomal scaffoldin adaptor protein B, ScaB |Acetivibrio cellulolyticus [TaxId: 35830]
d3d23b_ : (SER11) (GLY23) [view usage] : b.47.1.4 |Trypsin-like serine proteases |Trypsin-like serine proteases |Viral cysteine protease of trypsin fold |Coronavirus main proteinase (3Cl-pro, putative coronavirus nsp2) |Human coronavirus [TaxId: 443239]
d3vpda2 : (GLY160) (GLU170) [view usage] : d.142.1.7 |ATP-grasp |Glutathione synthetase ATP-binding domain-like |Lysine biosynthesis enzyme LysX ATP-binding domain |automated matches |Thermus thermophilus [TaxId: 274]
d2vjya1 : (PRO168) (PRO177) [view usage] : c.36.1.0 |Thiamin diphosphate-binding fold (THDP-binding) |Thiamin diphosphate-binding fold (THDP-binding) |automated matches |automated matches |Milk yeast (Kluyveromyces lactis) [TaxId: 28985]
d3r2ia1 : (ARG39) (THR58) [view usage] : b.40.2.0 |OB-fold |Bacterial enterotoxins |automated matches |automated matches |Staphylococcus aureus [TaxId: 93062]
d1uxna_ : (ALA126) (PRO139) [view usage] : c.82.1.1 |ALDH-like |ALDH-like |ALDH-like |Non-phosphorylating glyceraldehyde-3-phosphate dehydrogenase GapN |Thermoproteus tenax [TaxId: 2271]
d2rcdb_ : (PRO67) (ASN77) [view usage] : d.17.4.18 |Cystatin-like |NTF2-like |BxeB1374-like |Uncharacterized protein ECA3500 |Pectobacterium atrosepticum [TaxId: 29471]
d1g81a_ : (HIS2) (LYS15) [view usage] : d.190.1.1 |Chorismate lyase-like |Chorismate lyase-like |Chorismate lyase |Chorismate lyase |Escherichia coli [TaxId: 562]
d2dica1 : (ILE89) (ASP100) [view usage] : b.1.18.10 |Immunoglobulin-like beta-sandwich |E set domains |Filamin repeat (rod domain) |Filamin b |Human (Homo sapiens) [TaxId: 9606]
d1n06a_ : (GLN19) (LYS29) [view usage] : b.43.5.1 |Reductase/isomerase/elongation factor common domain |Riboflavin kinase-like |ATP-dependent riboflavin kinase-like |Riboflavin kinase |Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]
d1plqa2 : (PRO191) (ASP200) [view usage] : d.131.1.2 |DNA clamp |DNA clamp |DNA polymerase processivity factor |Proliferating cell nuclear antigen (PCNA) |Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
d4k6ha_ : (LYS13) (GLN23) [view usage] : c.69.1.17 |alpha/beta-Hydrolases |alpha/beta-Hydrolases |Fungal lipases |automated matches |Candida antarctica [TaxId: 34362]
d1gyhb_ : (ASP334) (LYS347) [view usage] : b.67.2.1 |5-bladed beta-propeller |Arabinanase/levansucrase/invertase |alpha-L-arabinanase-like |alpha-L-arabinanase |Cellvibrio cellulosa [TaxId: 155077]
d1oopa_ : (THR63) (GLU80) [view usage] : b.121.4.1 |Nucleoplasmin-like/VP (viral coat and capsid proteins) |Positive stranded ssRNA viruses |Picornaviridae-like VP (VP1, VP2, VP3 and VP4) |Swine vesicular disease virus coat proteins |Swine vesicular disease virus [TaxId: 12075]
d1gyha_ : (ASP334) (LYS347) [view usage] : b.67.2.1 |5-bladed beta-propeller |Arabinanase/levansucrase/invertase |alpha-L-arabinanase-like |alpha-L-arabinanase |Cellvibrio cellulosa [TaxId: 155077]
d2dmca1 : (VAL94) (GLN105) [view usage] : b.1.18.10 |Immunoglobulin-like beta-sandwich |E set domains |Filamin repeat (rod domain) |Filamin b |Human (Homo sapiens) [TaxId: 9606]
d3n1fa_ : (SER75) (PRO87) [view usage] : d.65.1.2 |Hedgehog/DD-peptidase |Hedgehog/DD-peptidase |Hedgehog (development protein), N-terminal signaling domain |automated matches |Human (Homo sapiens) [TaxId: 9606]
d1snka_ : (GLY205) (MET215) [view usage] : d.3.1.1 |Cysteine proteinases |Cysteine proteinases |Papain-like |(Pro)cathepsin K |Human (Homo sapiens) [TaxId: 9606]
d2e77b_ : (VAL1357) (PRO1369) [view usage] : c.1.4.0 |TIM beta/alpha-barrel |FMN-linked oxidoreductases |automated matches |automated matches |Aerococcus viridans [TaxId: 1377]
d2f3ia_ : (GLU136) (LYS146) [view usage] : b.40.4.0 |OB-fold |Nucleic acid-binding proteins |automated matches |automated matches |Human (Homo sapiens) [TaxId: 9606]
d1bfob1 : (HIS103) (VAL119) [view usage] : b.1.1.1 |Immunoglobulin-like beta-sandwich |Immunoglobulin |V set domains (antibody variable domain-like) |Immunoglobulin heavy chain variable domain, VH |Norway rat (Rattus norvegicus) [TaxId: 10116]
d2j6xa_ : (VAL357) (PRO369) [view usage] : c.1.4.0 |TIM beta/alpha-barrel |FMN-linked oxidoreductases |automated matches |automated matches |Aerococcus viridans [TaxId: 1377]
d1u20b_ : (HIS147) (TYR160) [view usage] : d.113.1.1 |Nudix |Nudix |MutT-like |automated matches |African clawed frog (Xenopus laevis) [TaxId: 8355]
d1uxva_ : (LEU128) (PRO139) [view usage] : c.82.1.1 |ALDH-like |ALDH-like |ALDH-like |Non-phosphorylating glyceraldehyde-3-phosphate dehydrogenase GapN |Thermoproteus tenax [TaxId: 2271]
d2dmba1 : (ILE92) (ASP103) [view usage] : b.1.18.10 |Immunoglobulin-like beta-sandwich |E set domains |Filamin repeat (rod domain) |Filamin b |Human (Homo sapiens) [TaxId: 9606]
d2wnxa_ : (THR6) (TYR17) [view usage] : b.2.2.0 |Common fold of diphtheria toxin/transcription factors/cytochrome f |Carbohydrate-binding domain |automated matches |automated matches |Clostridium thermocellum [TaxId: 1515]
d1vs6j1 : (PRO113) (ALA126) [view usage] : c.21.1.1 |Ribosomal protein L13 |Ribosomal protein L13 |Ribosomal protein L13 |Ribosomal protein L13 |Escherichia coli [TaxId: 562]
d4bj8l_ : (ALA108) (LYS121) [view usage] : b.61.1.0 |Streptavidin-like |Avidin/streptavidin |automated matches |automated matches |Zebrafish (Danio rerio) [TaxId: 7955]
d2ix1a3 : (LEU8) (GLU23) [view usage] : b.40.4.5 |OB-fold |Nucleic acid-binding proteins |Cold shock DNA-binding domain-like |Exoribonuclease 2, RNB |Escherichia coli [TaxId: 562]
d2j6xb_ : (VAL357) (PRO369) [view usage] : c.1.4.0 |TIM beta/alpha-barrel |FMN-linked oxidoreductases |automated matches |automated matches |Aerococcus viridans [TaxId: 1377]
d1tjgh1 : (ARG100) (ILE111) [view usage] : b.1.1.1 |Immunoglobulin-like beta-sandwich |Immunoglobulin |V set domains (antibody variable domain-like) |Immunoglobulin heavy chain variable domain, VH |Engineered (including hybrid species)
d4k5qa_ : (LYS13) (GLN23) [view usage] : c.69.1.17 |alpha/beta-Hydrolases |alpha/beta-Hydrolases |Fungal lipases |automated matches |Candida antarctica [TaxId: 34362]
d2vd2a_ : (LYS74) (VAL99) [view usage] : c.94.1.0 |Periplasmic binding protein-like II |Periplasmic binding protein-like II |automated matches |automated matches |Bacillus subtilis [TaxId: 1423]
d1fh0a_ : (GLY210) (VAL220) [view usage] : d.3.1.1 |Cysteine proteinases |Cysteine proteinases |Papain-like |(Pro)cathepsin V |Human (Homo sapiens) [TaxId: 9606]
d4dqna_ : (PRO312) (ASP340) [view usage] : e.17.1.0 |D-aminoacid aminotransferase-like PLP-dependent enzymes |D-aminoacid aminotransferase-like PLP-dependent enzymes |automated matches |automated matches |Streptococcus mutans [TaxId: 1309]
d3ht5a_ : (GLY339) (GLY368) [view usage] : e.17.1.0 |D-aminoacid aminotransferase-like PLP-dependent enzymes |D-aminoacid aminotransferase-like PLP-dependent enzymes |automated matches |automated matches |Mycobacterium tuberculosis [TaxId: 1773]
d1eu4a1 : (ASN4) (SER26) [view usage] : b.40.2.2 |OB-fold |Bacterial enterotoxins |Superantigen toxins, N-terminal domain |Streptococcal superantigen Spe-H |Streptococcus pyogenes [TaxId: 1314]
d1wrvb_ : (GLU132) (THR143) [view usage] : e.17.1.0 |D-aminoacid aminotransferase-like PLP-dependent enzymes |D-aminoacid aminotransferase-like PLP-dependent enzymes |automated matches |automated matches |Thermus thermophilus [TaxId: 274]
d1gbea_ : (PRO222) (GLU229) [view usage] : b.47.1.1 |Trypsin-like serine proteases |Trypsin-like serine proteases |Prokaryotic proteases |alpha-Lytic protease |Lysobacter enzymogenes, 495 [TaxId: 69]
d2wuea_ : (THR8) (GLU17) [view usage] : c.69.1.0 |alpha/beta-Hydrolases |alpha/beta-Hydrolases |automated matches |automated matches |Mycobacterium tuberculosis [TaxId: 83332]
d1bfvl_ : (ASN32) (PRO45) [view usage] : b.1.1.1 |Immunoglobulin-like beta-sandwich |Immunoglobulin |V set domains (antibody variable domain-like) |Immunoglobulin light chain kappa variable domain, VL-kappa |Mouse (Mus musculus), cluster 1.1 [TaxId: 10090]
d1i1ip_ : (GLU159) (VAL191) [view usage] : d.92.1.5 |Zincin-like |Metalloproteases ("zincins"), catalytic domain |Neurolysin-like |Neurolysin (endopeptidase 24.16, thimet oligopeptidase) |Norway rat (Rattus norvegicus) [TaxId: 10116]
d1frtc1 : (HIS268) (VAL279) [view usage] : b.1.1.2 |Immunoglobulin-like beta-sandwich |Immunoglobulin |C1 set domains (antibody constant domain-like) |Immunoglobulin heavy chain gamma constant domain 2, CH2-gamma |Norway rat (Rattus norvegicus) [TaxId: 10116]
d1t11a3 : (ALA135) (GLU153) [view usage] : d.26.1.1 |FKBP-like |FKBP-like |FKBP immunophilin/proline isomerase |Trigger factor PPIase domain |Vibrio cholerae [TaxId: 666]
d3bbnb1 : (GLU11) (ARG25) [view usage] : i.1.1.1 |Ribosome and ribosomal fragments |Ribosome and ribosomal fragments |Ribosome complexes |Eukaryotic, chloroplast (70S ribosome functional complex) |Spinach (Spinacia oleracea) [TaxId: 3562]
d2a7na_ : (TYR35) (ARG53) [view usage] : c.1.4.1 |TIM beta/alpha-barrel |FMN-linked oxidoreductases |FMN-linked oxidoreductases |automated matches |Pseudomonas putida [TaxId: 303]
d3lf6b_ : (ASN7) (ARG16) [view usage] : d.112.1.1 |Phoshotransferase/anion transport protein |Phoshotransferase/anion transport protein |IIA domain of mannitol-specific and ntr phosphotransferase EII |automated matches |Artificial gene [TaxId: 32630]
d2ik4b_ : (ASP273) (SER283) [view usage] : b.40.5.1 |OB-fold |Inorganic pyrophosphatase |Inorganic pyrophosphatase |Inorganic pyrophosphatase |Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
d2g6da1 : (GLY201) (ILE211) [view usage] : d.3.1.1 |Cysteine proteinases |Cysteine proteinases |Papain-like |(Pro)cathepsin S |Human (Homo sapiens) [TaxId: 9606]
d1nmpa_ : (GLY107) (GLY131) [view usage] : c.135.1.1 |NIF3 (NGG1p interacting factor 3)-like |NIF3 (NGG1p interacting factor 3)-like |NIF3 (NGG1p interacting factor 3)-like |Hypothetical protein YbgI |Escherichia coli [TaxId: 562]
d2ik7b_ : (ASP273) (ILE282) [view usage] : b.40.5.1 |OB-fold |Inorganic pyrophosphatase |Inorganic pyrophosphatase |Inorganic pyrophosphatase |Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
d2ik2b_ : (ASP273) (ILE282) [view usage] : b.40.5.1 |OB-fold |Inorganic pyrophosphatase |Inorganic pyrophosphatase |Inorganic pyrophosphatase |Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
d3gu3a_ : (ILE147) (ASP156) [view usage] : c.66.1.49 |S-adenosyl-L-methionine-dependent methyltransferases |S-adenosyl-L-methionine-dependent methyltransferases |BC2162-like |automated matches |Bacillus cereus [TaxId: 226900]
d1cm5a_ : (THR743) (SER758) [view usage] : c.7.1.1 |PFL-like glycyl radical enzymes |PFL-like glycyl radical enzymes |PFL-like |Pyruvate formate-lyase, PFL |Escherichia coli [TaxId: 562]
d4bj8o_ : (ALA108) (LYS121) [view usage] : b.61.1.0 |Streptavidin-like |Avidin/streptavidin |automated matches |automated matches |Zebrafish (Danio rerio) [TaxId: 7955]
d1reqa1 : (PHE280) (MET292) [view usage] : c.1.19.1 |TIM beta/alpha-barrel |Cobalamin (vitamin B12)-dependent enzymes |Methylmalonyl-CoA mutase, N-terminal (CoA-binding) domain |Methylmalonyl-CoA mutase alpha subunit, domain 1 |Propionibacterium freudenreichii, subsp. shermanii [TaxId: 1744]
d4fsla_ : (PHE47) (GLY56) [view usage] : b.50.1.2 |Acid proteases |Acid proteases |Pepsin-like |beta-secretase (memapsin) |Human (Homo sapiens) [TaxId: 9606]
d2xu3a_ : (GLY210) (VAL220) [view usage] : d.3.1.0 |Cysteine proteinases |Cysteine proteinases |automated matches |automated matches |Human (Homo sapiens) [TaxId: 9606]
d1gyhd_ : (ASP334) (LEU346) [view usage] : b.67.2.1 |5-bladed beta-propeller |Arabinanase/levansucrase/invertase |alpha-L-arabinanase-like |alpha-L-arabinanase |Cellvibrio cellulosa [TaxId: 155077]
d1wgba_ : (LEU3) (GLY16) [view usage] : b.45.1.2 |Split barrel-like |FMN-binding split barrel |NADH:FMN oxidoreductase-like |Putative flavoprotein TTHA0420 |Thermus thermophilus [TaxId: 274]
d2nvub1 : (CYS2343) (ILE2353) [view usage] : c.111.1.2 |Activating enzymes of the ubiquitin-like proteins |Activating enzymes of the ubiquitin-like proteins |Ubiquitin activating enzymes (UBA) |UBA3 |Human (Homo sapiens) [TaxId: 9606]
d1qfha1 : (ILE738) (GLU749) [view usage] : b.1.18.10 |Immunoglobulin-like beta-sandwich |E set domains |Filamin repeat (rod domain) |F-actin cross-linking gelation factor (ABP-120) repeats |Slime mold (Dictyostelium discoideum) [TaxId: 44689]
d1boqa_ : (PRO173) (GLU182) [view usage] : b.47.1.1 |Trypsin-like serine proteases |Trypsin-like serine proteases |Prokaryotic proteases |alpha-Lytic protease |Lysobacter enzymogenes, 495 [TaxId: 69]
d3eg7b_ : (ASN-1) (ALA9) [view usage] : d.108.1.0 |Acyl-CoA N-acyltransferases (Nat) |Acyl-CoA N-acyltransferases (Nat) |automated matches |automated matches |Vibrio cholerae [TaxId: 666]
d1yoaa1 : (LEU3) (GLY16) [view usage] : b.45.1.2 |Split barrel-like |FMN-binding split barrel |NADH:FMN oxidoreductase-like |Putative flavoprotein TTHA0420 |Thermus thermophilus [TaxId: 274]
d3uyya_ : (PRO331) (VAL358) [view usage] : e.17.1.0 |D-aminoacid aminotransferase-like PLP-dependent enzymes |D-aminoacid aminotransferase-like PLP-dependent enzymes |automated matches |automated matches |Deinococcus radiodurans [TaxId: 1299]
d2ee9a_ : (ILE79) (TYR90) [view usage] : b.1.18.10 |Immunoglobulin-like beta-sandwich |E set domains |Filamin repeat (rod domain) |Filamin b |Human (Homo sapiens) [TaxId: 9606]
d1gyeb_ : (ASP334) (LEU346) [view usage] : b.67.2.1 |5-bladed beta-propeller |Arabinanase/levansucrase/invertase |alpha-L-arabinanase-like |alpha-L-arabinanase |Cellvibrio cellulosa [TaxId: 155077]
d1i0ad_ : (LEU343) (LYS357) [view usage] : a.127.1.1 |L-aspartase-like |L-aspartase-like |L-aspartase/fumarase |Argininosuccinate lyase/delta-crystallin |Turkey (Meleagris gallopavo), delta-crystallin [TaxId: 9103]
d1jaja_ : (THR3) (ASN23) [view usage] : d.218.1.2 |Nucleotidyltransferase |Nucleotidyltransferase |DNA polymerase beta-like |DNA polymerase X |African swine fever virus [TaxId: 10497]
d1jhsa_ : (ARG194) (ASP213) [view usage] : d.107.1.1 |Mog1p/PsbP-like |Mog1p/PsbP-like |Ran-binding protein mog1p |Ran-binding protein mog1p |Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
List of distinct SCOP folds where this concept is used (in one or more of its domains):
b.70, e.8, e.3, c.1, b.82, c.67, c.69, c.94, d.58, i.1, b.29, c.82, c.26, b.67, b.47, c.66, d.92, c.135, a.127, b.50,
d.129, b.40, c.36, c.7, c.47, c.55, b.121, d.3, b.2, e.17, c.71, b.1, b.45, d.108, b.42, d.17, d.21, b.84, c.111, d.142,
d.131, d.41, e.1, d.67, b.61, d.65, d.15, b.7, b.43, b.3, d.218, d.113, d.26, d.112, a.28, g.44, c.21, d.107, b.159, d.190,
b.57, a.250