Protein Concepts Dictionary

Tableau information

Concept source:  d2znsa_  amino acid (a.a.) range (LYS664)(LYS680)

nSSEs in this Concept: 2

String of secondary struct.elems. (SSEs) defining this concept: EH

Each SSE's a.a.range: (start resi) (end resi) SSEtype (H=Helix; E=Strand) followed by a numeric SSE ID:
	  (LYS664)  (VAL670) E1
	  (SER674)  (LYS680) H2

Orientation angles° of SSE-pairs; those in contact shown in bold font
          E1            
H2     -117.4°       
Footnote: Inferred from this concept's usages (listed below) was the angular variance of 1σ = ±4.4°  about each orientation angle shown above.

Loci of concept usages (shown as a range of a.a. residue ids) in SCOP(v2.05) domains, along with their brief legend taken from SCOP
 d2uz5a_ :    (TYR55)   (GLY72)   [view usage] : d.26.1.0 |FKBP-like |FKBP-like |automated matches |automated matches |Legionella pneumophila [TaxId: 446]
 d1iyla1 :    (ASP82)  (TYR107)   [view usage] : d.108.1.2 |Acyl-CoA N-acyltransferases (Nat) |Acyl-CoA N-acyltransferases (Nat) |N-myristoyl transferase, NMT |N-myristoyl transferase, NMT |Yeast (Candida albicans) [TaxId: 5476]
 d2cnwd2 :   (ASP288)  (GLU303)   [view usage] : c.37.1.10 |P-loop containing nucleoside triphosphate hydrolases |P-loop containing nucleoside triphosphate hydrolases |Nitrogenase iron protein-like |automated matches |Thermus aquaticus [TaxId: 271]
 d1izna_ :   (ASP107)  (HIS135)   [view usage] : e.43.1.1 |Subunits of heterodimeric actin filament capping protein Capz |Subunits of heterodimeric actin filament capping protein Capz |Capz alpha-1 subunit |Capz alpha-1 subunit |Chicken (Gallus gallus) [TaxId: 9031]
 d1yvyb2 :  (GLY1277) (ILE1298)   [view usage] : c.91.1.0 |PEP carboxykinase-like |PEP carboxykinase-like |automated matches |automated matches |Anaerobiospirillum succiniciproducens [TaxId: 13335]
 d1jdbb2 :   (ARG988) (GLY1007)   [view usage] : c.24.1.1 |Methylglyoxal synthase-like |Methylglyoxal synthase-like |Carbamoyl phosphate synthetase, large subunit allosteric, C-terminal domain |Carbamoyl phosphate synthetase, large subunit allosteric, C-terminal domain |Escherichia coli [TaxId: 562]
 d3oicd_ :    (GLY93)  (HIS105)   [view usage] : c.2.1.0 |NAD(P)-binding Rossmann-fold domains |NAD(P)-binding Rossmann-fold domains |automated matches |automated matches |Bacillus subtilis [TaxId: 1423]
 d1sd0a2 :   (LYS164)  (HIS185)   [view usage] : d.128.1.2 |Glutamine synthetase/guanido kinase |Glutamine synthetase/guanido kinase |Guanido kinase catalytic domain |Arginine kinase, C-terminal domain |Horseshoe crab (Limulus polyphemus) [TaxId: 6850]
 d2wnca_ :   (MET126)  (GLY137)   [view usage] : b.96.1.0 |Nicotinic receptor ligand binding domain-like |Nicotinic receptor ligand binding domain-like |automated matches |automated matches |California sea hare (Aplysia californica) [TaxId: 6500]
 d3w7va_ :     (GLU7)   (ASP18)   [view usage] : c.23.10.0 |Flavodoxin-like |SGNH hydrolase |automated matches |automated matches |Geobacillus stearothermophilus [TaxId: 1422]
 d1p50a2 :   (LYS164)  (HIS185)   [view usage] : d.128.1.2 |Glutamine synthetase/guanido kinase |Glutamine synthetase/guanido kinase |Guanido kinase catalytic domain |Arginine kinase, C-terminal domain |Horseshoe crab (Limulus polyphemus) [TaxId: 6850]
 d1edba_ :   (THR119)  (LEU129)   [view usage] : c.69.1.8 |alpha/beta-Hydrolases |alpha/beta-Hydrolases |Haloalkane dehalogenase |Haloalkane dehalogenase |Xanthobacter autotrophicus [TaxId: 280]
 d2kmta_ :    (GLN70)  (GLY104)   [view usage] : b.34.6.1 |SH3-like barrel |Cell growth inhibitor/plasmid maintenance toxic component |CcdB |CcdB |Vibrio fischeri [TaxId: 668]
 d3fbca_ :   (ILE111)  (PRO129)   [view usage] : d.58.6.1 |Ferredoxin-like |Nucleoside diphosphate kinase, NDK |Nucleoside diphosphate kinase, NDK |automated matches |Acanthamoeba polyphaga mimivirus [TaxId: 212035]
 d4f18a_ :  (PRO1135) (LYS1158)   [view usage] : c.94.1.1 |Periplasmic binding protein-like II |Periplasmic binding protein-like II |Phosphate binding protein-like |Phosphate-binding protein |Pseudomonas fluorescens [TaxId: 294]
 d2phcb1 :   (TYR205)  (TRP217)   [view usage] : b.62.1.4 |Cyclophilin-like |Cyclophilin-like |PH0987 C-terminal domain-like |Uncharacterized protein PH0987 |Pyrococcus horikoshii [TaxId: 53953]
 d2byrd_ :   (MET126)  (GLY137)   [view usage] : b.96.1.0 |Nicotinic receptor ligand binding domain-like |Nicotinic receptor ligand binding domain-like |automated matches |automated matches |California sea hare (Aplysia californica) [TaxId: 6500]
 d3lbla_ :    (PRO89)  (LEU107)   [view usage] : a.42.1.1 |SWIB/MDM2 domain |SWIB/MDM2 domain |SWIB/MDM2 domain |MDM2 |Human (Homo sapiens) [TaxId: 9606]
 d4pfta_ :   (GLY279)  (ILE291)   [view usage] : c.94.1.1 |Periplasmic binding protein-like II |Periplasmic binding protein-like II |Phosphate binding protein-like |Oligo-peptide binding protein (OPPA) |Thermotoga maritima [TaxId: 2336]
 d1wdta5 :   (ASN382)  (ARG397)   [view usage] : d.58.11.1 |Ferredoxin-like |EF-G C-terminal domain-like |EF-G/eEF-2 domains III and V |Elongation factor G (EF-G) |Thermus thermophilus, EF-G-2 [TaxId: 274]
 d2ekha_ :    (GLU50)   (VAL61)   [view usage] : b.34.2.0 |SH3-like barrel |SH3-domain |automated matches |automated matches |Human (Homo sapiens) [TaxId: 9606]
 d2zcwa2 :    (VAL78)  (LEU113)   [view usage] : b.82.3.2 |Double-stranded beta-helix |cAMP-binding domain-like |cAMP-binding domain |Transcriptional regulator TTHA1359, N-terminal domain |Thermus thermophilus [TaxId: 274]
 d2wn9b_ :   (MET126)  (GLY137)   [view usage] : b.96.1.0 |Nicotinic receptor ligand binding domain-like |Nicotinic receptor ligand binding domain-like |automated matches |automated matches |California sea hare (Aplysia californica) [TaxId: 6500]
 d4g8jb_ :   (THR110)  (ALA123)   [view usage] : c.56.2.1 |Phosphorylase/hydrolase-like |Purine and uridine phosphorylases |Purine and uridine phosphorylases |Uridine phosphorylase |Vibrio cholerae [TaxId: 243277]
 d1iylc1 :    (ASP82)  (TYR107)   [view usage] : d.108.1.2 |Acyl-CoA N-acyltransferases (Nat) |Acyl-CoA N-acyltransferases (Nat) |N-myristoyl transferase, NMT |N-myristoyl transferase, NMT |Yeast (Candida albicans) [TaxId: 5476]
 d1svpa_ :   (ASP163)  (GLU176)   [view usage] : b.47.1.3 |Trypsin-like serine proteases |Trypsin-like serine proteases |Viral proteases |Viral capsid protein |Sindbis virus [TaxId: 11034]
 d4gwoa_ :    (GLY93)  (ALA104)   [view usage] : c.94.1.1 |Periplasmic binding protein-like II |Periplasmic binding protein-like II |Phosphate binding protein-like |automated matches |Salmonella enterica [TaxId: 99287]
 d1sgva1 :   (ALA237)  (GLY252)   [view usage] : b.122.1.1 |PUA domain-like |PUA domain-like |PUA domain |Pseudouridine synthase II TruB, C-terminal domain |Mycobacterium tuberculosis [TaxId: 1773]
 d2wzyb_ :   (MET126)  (GLY137)   [view usage] : b.96.1.0 |Nicotinic receptor ligand binding domain-like |Nicotinic receptor ligand binding domain-like |automated matches |automated matches |California sea hare (Aplysia californica) [TaxId: 6500]
 d2hbaa1 :    (LEU35)   (GLN52)   [view usage] : d.100.1.1 |MbtH/L9 domain-like |L9 N-domain-like |Ribosomal protein L9 N-domain |Ribosomal protein L9 N-domain |Bacillus stearothermophilus [TaxId: 1422]
 d1v3wa_ :   (PRO137)  (LYS168)   [view usage] : b.81.1.5 |Single-stranded left-handed beta-helix |Trimeric LpxA-like enzymes |gamma-carbonic anhydrase-like |Ferripyochelin binding protein |Pyrococcus horikoshii [TaxId: 53953]
 d3obra1 :   (ASN930)  (SER946)   [view usage] : b.29.1.0 |Concanavalin A-like lectins/glucanases |Concanavalin A-like lectins/glucanases |automated matches |automated matches |Clostridium botulinum [TaxId: 1491]
 d4kcda_ :   (PHE171)  (PHE189)   [view usage] : c.94.1.0 |Periplasmic binding protein-like II |Periplasmic binding protein-like II |automated matches |automated matches |Norway rat (Rattus norvegicus) [TaxId: 10116]
 d1eqnb_ :   (LYS229)  (GLN244)   [view usage] : e.13.1.1 |DNA primase core |DNA primase core |DNA primase DnaG catalytic core |DNA primase DnaG catalytic core |Escherichia coli [TaxId: 562]
 d1k3ca1 :   (GLY283)  (ILE304)   [view usage] : c.91.1.1 |PEP carboxykinase-like |PEP carboxykinase-like |PEP carboxykinase C-terminal domain |Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxaloacetate carboxy-lyase) |Escherichia coli [TaxId: 562]
 d1wcmg_ :     (ASP6)   (PRO20)   [view usage] : i.8.1.1 |RNA polymerase |RNA polymerase |RNA polymerase |Complete 12-subunit RNA polymerase II complex |Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
 d1xd3c_ :    (CYS50)   (LYS72)   [view usage] : d.3.1.6 |Cysteine proteinases |Cysteine proteinases |Ubiquitin carboxyl-terminal hydrolase UCH-L |Ubiquitin carboxyl-terminal hydrolase UCH-l3 |Human (Homo sapiens) [TaxId: 9606]
 d4pfya_ :   (GLY279)  (PRO292)   [view usage] : c.94.1.1 |Periplasmic binding protein-like II |Periplasmic binding protein-like II |Phosphate binding protein-like |Oligo-peptide binding protein (OPPA) |Thermotoga maritima [TaxId: 2336]
 d4dhjc_ :    (HIS36)   (GLY50)   [view usage] : d.20.1.1 |UBC-like |UBC-like |UBC-related |Ubiquitin conjugating enzyme, UBC |Human (Homo sapiens), ubc13 [TaxId: 9606]
 d3s8ga_ :   (ALA509)  (ASP525)   [view usage] : f.24.1.1 |Cytochrome c oxidase subunit I-like |Cytochrome c oxidase subunit I-like |Cytochrome c oxidase subunit I-like |Bacterial ba3 type cytochrome c oxidase subunit I |Thermus thermophilus [TaxId: 274]
 d3peoj_ :   (MET126)  (GLY137)   [view usage] : b.96.1.0 |Nicotinic receptor ligand binding domain-like |Nicotinic receptor ligand binding domain-like |automated matches |automated matches |California sea hare (Aplysia californica) [TaxId: 6500]
 d3kw4a_ :    (SER96)  (PHE108)   [view usage] : a.104.1.1 |Cytochrome P450 |Cytochrome P450 |Cytochrome P450 |Mammalian cytochrome p450 2b4 |Rabbit (Oryctolagus cuniculus) [TaxId: 9986]
 d1hq8a_ :   (LEU150)  (VAL165)   [view usage] : d.169.1.1 |C-type lectin-like |C-type lectin-like |C-type lectin domain |NK cell-activating receptor nkg2d |Mouse (Mus musculus) [TaxId: 10090]
 d1nawa_ :   (LYS287)  (GLN307)   [view usage] : d.68.2.2 |IF3-like |EPT/RTPC-like |Enolpyruvate transferase, EPT |UDP-N-acetylglucosamine enolpyruvyl transferase (EPT, MurA, MurZ) |Enterobacter cloacae [TaxId: 550]
 d2q66a2 :   (ILE151)  (VAL201)   [view usage] : d.218.1.3 |Nucleotidyltransferase |Nucleotidyltransferase |Poly(A) polymerase, PAP, N-terminal domain |Poly(A) polymerase, PAP, N-terminal domain |Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
 d1nswa_ :     (MET3)   (GLN15)   [view usage] : c.47.1.1 |Thioredoxin fold |Thioredoxin-like |Thioltransferase |Thioredoxin |Alicyclobacillus acidocaldarius, formerly Bacillus acidocaldarius [TaxId: 405212]
 d3r95b_ :    (GLU17)   (ASN38)   [view usage] : d.108.1.0 |Acyl-CoA N-acyltransferases (Nat) |Acyl-CoA N-acyltransferases (Nat) |automated matches |automated matches |Escherichia coli [TaxId: 562]
 d2a08a_ :    (GLY49)   (ARG60)   [view usage] : b.34.2.1 |SH3-like barrel |SH3-domain |SH3-domain |automated matches |Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
 d2voua2 :   (GLY168)  (TYR188)   [view usage] : d.16.1.2 |FAD-linked reductases, C-terminal domain |FAD-linked reductases, C-terminal domain |PHBH-like |Dihydroxypyridine hydroxylase DhpH |Arthrobacter nicotinovorans [TaxId: 29320]
 d1j3bb2 :    (LYS57)   (ILE69)   [view usage] : c.109.1.1 |PEP carboxykinase N-terminal domain |PEP carboxykinase N-terminal domain |PEP carboxykinase N-terminal domain |Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxaloacetate carboxy-lyase) |Thermus thermophilus [TaxId: 274]
 d3q5va_ :   (THR147)  (GLY175)   [view usage] : b.40.5.1 |OB-fold |Inorganic pyrophosphatase |Inorganic pyrophosphatase |automated matches |Thermococcus thioreducens [TaxId: 277988]
 d2byra_ :   (MET126)  (GLY137)   [view usage] : b.96.1.0 |Nicotinic receptor ligand binding domain-like |Nicotinic receptor ligand binding domain-like |automated matches |automated matches |California sea hare (Aplysia californica) [TaxId: 6500]
 d4m1va_ :   (PRO134)  (LYS157)   [view usage] : c.94.1.1 |Periplasmic binding protein-like II |Periplasmic binding protein-like II |Phosphate binding protein-like |automated matches |Unidentified prokaryotic [TaxId: 2725]
 d2byrj_ :   (MET126)  (GLY137)   [view usage] : b.96.1.0 |Nicotinic receptor ligand binding domain-like |Nicotinic receptor ligand binding domain-like |automated matches |automated matches |California sea hare (Aplysia californica) [TaxId: 6500]
 d1m10b_ :   (PRO206)  (ASN223)   [view usage] : c.10.2.7 |Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) |L domain-like |Ngr ectodomain-like |von Willebrand factor binding domain of glycoprotein Ib alpha |Human (Homo sapiens) [TaxId: 9606]
 d1xhda_ :   (PRO136)  (GLN169)   [view usage] : b.81.1.5 |Single-stranded left-handed beta-helix |Trimeric LpxA-like enzymes |gamma-carbonic anhydrase-like |Putative acetyltransferase/acyltransferase BC4754 |Bacillus cereus [TaxId: 1396]
 d3hh2a_ :    (TYR18)   (PRO35)   [view usage] : g.17.1.0 |Cystine-knot cytokines |Cystine-knot cytokines |automated matches |automated matches |Mouse (Mus musculus) [TaxId: 10090]
 d3edea2 :   (SER222)  (ASN241)   [view usage] : c.1.8.1 |TIM beta/alpha-barrel |(Trans)glycosidases |Amylase, catalytic domain |automated matches |Flavobacterium sp. [TaxId: 197856]
 d1jv2a4 :   (LEU208)  (SER220)   [view usage] : b.69.8.1 |7-bladed beta-propeller |Integrin alpha N-terminal domain |Integrin alpha N-terminal domain |Integrin alpha N-terminal domain |Human (Homo sapiens), isoform V [TaxId: 9606]
 d1mu7b1 :   (PRO163)  (ALA182)   [view usage] : d.136.1.3 |Phospholipase D/nuclease |Phospholipase D/nuclease |Tyrosyl-DNA phosphodiesterase TDP1 |Tyrosyl-DNA phosphodiesterase TDP1 |Human (Homo sapiens) [TaxId: 9606]
 d3bboh1 :   (GLY101)  (ARG127)   [view usage] : i.1.1.1 |Ribosome and ribosomal fragments |Ribosome and ribosomal fragments |Ribosome complexes |Eukaryotic, chloroplast (70S ribosome functional complex) |Spinach (Spinacia oleracea) [TaxId: 3562]
 d3w01a_ :   (GLU112)  (LYS132)   [view usage] : c.1.4.1 |TIM beta/alpha-barrel |FMN-linked oxidoreductases |FMN-linked oxidoreductases |PcrB protein homolog YerE |Staphylococcus aureus [TaxId: 418127]
 d1hwoa_ :    (LEU39)   (VAL55)   [view usage] : d.165.1.1 |Ribosome inactivating proteins (RIP) |Ribosome inactivating proteins (RIP) |Plant cytotoxins |Ebulin A-chain |Sambucus ebulus [TaxId: 28503]
 d3zk5a_ :    (VAL52)   (ASP67)   [view usage] : a.104.1.0 |Cytochrome P450 |Cytochrome P450 |automated matches |automated matches |Streptomyces venezuelae [TaxId: 54571]
 d2lgja_ :    (GLY37)   (ALA48)   [view usage] : c.56.3.0 |Phosphorylase/hydrolase-like |Peptidyl-tRNA hydrolase-like |automated matches |automated matches |Mycobacterium smegmatis [TaxId: 246196]
 d1iyka1 :    (ASP82)  (TYR107)   [view usage] : d.108.1.2 |Acyl-CoA N-acyltransferases (Nat) |Acyl-CoA N-acyltransferases (Nat) |N-myristoyl transferase, NMT |N-myristoyl transferase, NMT |Yeast (Candida albicans) [TaxId: 5476]
 d4aiaa_ :   (LEU171)  (LYS182)   [view usage] : a.96.1.0 |DNA-glycosylase |DNA-glycosylase |automated matches |automated matches |Staphylococcus aureus [TaxId: 1280]
 d3iifc_ :   (VAL346)  (GLU362)   [view usage] : c.50.1.2 |Macro domain-like |Macro domain-like |Macro domain |Histone macro-H2a1.1 |Human (Homo sapiens) [TaxId: 9606]
 d1qs1a2 :   (SER391)  (LYS401)   [view usage] : d.166.1.1 |ADP-ribosylation |ADP-ribosylation |ADP-ribosylating toxins |Vegetative insecticidal protein 2 (VIP2) |Bacillus cereus [TaxId: 1396]
 d4eata_ :   (GLN136)  (HIS161)   [view usage] : e.23.1.0 |Acetyl-CoA synthetase-like |Acetyl-CoA synthetase-like |automated matches |automated matches |Rhodopseudomonas palustris [TaxId: 1076]
 d1ytla1 :    (THR20)   (LYS34)   [view usage] : c.31.1.6 |DHS-like NAD/FAD-binding domain |DHS-like NAD/FAD-binding domain |ACDE2-like |Acetyl-CoA decarbonylase/synthase complex epsilon subunit 2, ACDE2 |Archaeoglobus fulgidus [TaxId: 2234]
 d2nnra_ :     (HIS3)   (ALA12)   [view usage] : b.1.26.1 |Immunoglobulin-like beta-sandwich |ICP-like |ICP-like |Chagasin |Trypanosoma cruzi [TaxId: 5693]
 d1glga_ :   (VAL290)  (SER307)   [view usage] : c.93.1.1 |Periplasmic binding protein-like I |Periplasmic binding protein-like I |L-arabinose binding protein-like |Galactose/glucose-binding protein |Escherichia coli [TaxId: 562]
 d1icva_ :    (SER79)   (VAL98)   [view usage] : d.90.1.1 |FMN-dependent nitroreductase-like |FMN-dependent nitroreductase-like |NADH oxidase/flavin reductase |Oxygen-insensitive NAD(P)H nitroreductase |Escherichia coli, minor form, NfnB [TaxId: 562]
 d1d8va_ :    (ILE34)   (ILE48)   [view usage] : d.165.1.1 |Ribosome inactivating proteins (RIP) |Ribosome inactivating proteins (RIP) |Plant cytotoxins |Beta-momorcharin |Bitter gourd (Momordica charantia) [TaxId: 3673]
 d2wl9a2 :   (PHE283)  (PRO297)   [view usage] : d.32.1.0 |Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase |Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase |automated matches |automated matches |Rhodococcus sp. [TaxId: 186196]
 d1k7la_ :   (SER234)  (VAL255)   [view usage] : a.123.1.1 |Nuclear receptor ligand-binding domain |Nuclear receptor ligand-binding domain |Nuclear receptor ligand-binding domain |Peroxisome proliferator activated receptor alpha, PPAR-alpha |Human (Homo sapiens) [TaxId: 9606]
 d3vnoa_ :   (SER204)  (ALA217)   [view usage] : a.104.1.0 |Cytochrome P450 |Cytochrome P450 |automated matches |automated matches |Sphingomonas paucimobilis [TaxId: 13689]
 d4f7wa_ :  (LEU1013) (VAL1027)   [view usage] : c.37.1.6 |P-loop containing nucleoside triphosphate hydrolases |P-loop containing nucleoside triphosphate hydrolases |Phosphoribulokinase/pantothenate kinase |automated matches |Klebsiella pneumoniae [TaxId: 507522]
 d4v06b_ :   (PRO152)  (ARG167)   [view usage] : d.178.1.1 |Aromatic aminoacid monoxygenases, catalytic and oligomerization domains |Aromatic aminoacid monoxygenases, catalytic and oligomerization domains |Aromatic aminoacid monoxygenases, catalytic and oligomerization domains |automated matches |Human (Homo sapiens) [TaxId: 9606]
 d1mpya2 :   (VAL280)  (PHE292)   [view usage] : d.32.1.3 |Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase |Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase |Extradiol dioxygenases |Catechol 2,3-dioxygenase (metapyrocatechase) |Pseudomonas putida, mt2 [TaxId: 303]
 d2go7c_ :     (THR4)   (LEU15)   [view usage] : c.108.1.6 |HAD-like |HAD-like |beta-Phosphoglucomutase-like |Hypothetical protein SP2064 |Pneumococcus (Streptococcus pneumoniae) [TaxId: 1313]
 d1tlua_ :     (GLY5)   (ASN22)   [view usage] : d.156.1.2 |S-adenosylmethionine decarboxylase |S-adenosylmethionine decarboxylase |Bacterial S-adenosylmethionine decarboxylase |S-adenosylmethionine decarboxylase (SamDC, SpeH) |Thermotoga maritima [TaxId: 2336]
 d1rdfa_ :     (GLU7)   (VAL18)   [view usage] : c.108.1.3 |HAD-like |HAD-like |Phosphonoacetaldehyde hydrolase-like |Phosphonoacetaldehyde hydrolase |Bacillus cereus [TaxId: 1396]
 d1dzfa2 :   (PRO151)  (ARG169)   [view usage] : d.78.1.1 |RPB5-like RNA polymerase subunit |RPB5-like RNA polymerase subunit |RPB5 |Eukaryotic RPB5 C-terminal domain |Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
 d1ytlc_ :    (MET18)   (LYS34)   [view usage] : c.31.1.6 |DHS-like NAD/FAD-binding domain |DHS-like NAD/FAD-binding domain |ACDE2-like |Acetyl-CoA decarbonylase/synthase complex epsilon subunit 2, ACDE2 |Archaeoglobus fulgidus [TaxId: 2234]
 d2i00c2 :     (GLN9)   (VAL30)   [view usage] : d.108.1.10 |Acyl-CoA N-acyltransferases (Nat) |Acyl-CoA N-acyltransferases (Nat) |EF1021-like |Putative acetyltransferase EF2353 |Enterococcus faecalis [TaxId: 1351]
 d4l83a_ :    (PRO80)   (GLY91)   [view usage] : d.20.1.1 |UBC-like |UBC-like |UBC-related |automated matches |Nematode (Brugia malayi) [TaxId: 6279]
 d4e2ab_ :     (GLN3)   (PHE29)   [view usage] : d.108.1.0 |Acyl-CoA N-acyltransferases (Nat) |Acyl-CoA N-acyltransferases (Nat) |automated matches |automated matches |Streptococcus mutans [TaxId: 1309]
 d2xdra_ :   (GLY366)  (ARG385)   [view usage] : c.82.1.0 |ALDH-like |ALDH-like |automated matches |automated matches |Pseudomonas aeruginosa [TaxId: 287]
 d1k8ha_ :    (LEU22)   (GLY43)   [view usage] : b.111.1.1 |Small protein B (SmpB) |Small protein B (SmpB) |Small protein B (SmpB) |Small protein B (SmpB) |Aquifex aeolicus [TaxId: 63363]
 d3iima_ :    (GLY73)   (HIS90)   [view usage] : c.37.1.1 |P-loop containing nucleoside triphosphate hydrolases |P-loop containing nucleoside triphosphate hydrolases |Nucleotide and nucleoside kinases |automated matches |Human (Homo sapiens) [TaxId: 9606]
 d2asea1 :   (TYR154)  (GLU178)   [view usage] : c.37.1.8 |P-loop containing nucleoside triphosphate hydrolases |P-loop containing nucleoside triphosphate hydrolases |G proteins |CDC42 |Human (Homo sapiens) [TaxId: 9606]
 d2wncc_ :   (MET126)  (GLY137)   [view usage] : b.96.1.0 |Nicotinic receptor ligand binding domain-like |Nicotinic receptor ligand binding domain-like |automated matches |automated matches |California sea hare (Aplysia californica) [TaxId: 6500]
 d1we5a4 :   (ARG466)  (PRO476)   [view usage] : c.1.8.13 |TIM beta/alpha-barrel |(Trans)glycosidases |YicI catalytic domain-like |Putative glucosidase YicI, domain 2 |Escherichia coli [TaxId: 562]
 d3jpzb2 :   (SER157)  (HIS178)   [view usage] : d.128.1.0 |Glutamine synthetase/guanido kinase |Glutamine synthetase/guanido kinase |automated matches |automated matches |Innkeeper worm (Urechis caupo) [TaxId: 6431]
 d3mbqa_ :    (LEU11)   (LEU22)   [view usage] : b.85.4.0 |beta-clip |dUTPase-like |automated matches |automated matches |Brucella melitensis [TaxId: 359391]
 d2o8ra4 :   (ARG506)  (GLY532)   [view usage] : d.136.1.4 |Phospholipase D/nuclease |Phospholipase D/nuclease |Polyphosphate kinase C-terminal domain |Polyphosphate kinase, PPK |Porphyromonas gingivalis [TaxId: 837]
 d4lt6b1 :   (ASP166)  (VAL213)   [view usage] : d.218.1.0 |Nucleotidyltransferase |Nucleotidyltransferase |automated matches |automated matches |Human (Homo sapiens) [TaxId: 9606]
 d2wnjc_ :   (MET126)  (GLY137)   [view usage] : b.96.1.0 |Nicotinic receptor ligand binding domain-like |Nicotinic receptor ligand binding domain-like |automated matches |automated matches |California sea hare (Aplysia californica) [TaxId: 6500]
 d2czja1 :    (LEU17)   (ARG35)   [view usage] : b.111.1.1 |Small protein B (SmpB) |Small protein B (SmpB) |Small protein B (SmpB) |Small protein B (SmpB) |Thermus thermophilus [TaxId: 274]
 d4kl6a_ :    (GLY-1)   (ARG25)   [view usage] : b.86.1.0 |Hedgehog/intein (Hint) domain |Hedgehog/intein (Hint) domain |automated matches |automated matches |Nostoc punctiforme [TaxId: 63737]
 d2rksa_ :    (LYS38)   (ALA69)   [view usage] : b.40.1.1 |OB-fold |Staphylococcal nuclease |Staphylococcal nuclease |Staphylococcal nuclease |Staphylococcus aureus [TaxId: 1280]
 d3o6oa_ :   (GLY168)  (GLU184)   [view usage] : d.122.1.1 |ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase |ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase |Heat shock protein 90, HSP90, N-terminal domain |automated matches |Trypanosome (Trypanosoma brucei) [TaxId: 5691]
 d4k89a_ :    (PRO59)   (GLY92)   [view usage] : d.92.1.2 |Zincin-like |Metalloproteases ("zincins"), catalytic domain |Thermolysin-like |Elastase |Pseudomonas aeruginosa [TaxId: 287]
 d1yf2a1 :   (ILE163)  (LYS205)   [view usage] : d.287.1.2 |DNA methylase specificity domain |DNA methylase specificity domain |Type I restriction modification DNA specificity domain |Bipartite methylase S protein MJ0130 |Methanocaldococcus jannaschii [TaxId: 2190]
 d3uorb_ :   (ILE185)  (ASP203)   [view usage] : c.94.1.0 |Periplasmic binding protein-like II |Periplasmic binding protein-like II |automated matches |automated matches |Xanthomonas axonopodis [TaxId: 190486]
 d1dpea_ :   (LEU262)  (VAL279)   [view usage] : c.94.1.1 |Periplasmic binding protein-like II |Periplasmic binding protein-like II |Phosphate binding protein-like |Dipeptide-binding protein |Escherichia coli [TaxId: 562]
 d2byne_ :   (MET126)  (GLY137)   [view usage] : b.96.1.0 |Nicotinic receptor ligand binding domain-like |Nicotinic receptor ligand binding domain-like |automated matches |automated matches |California sea hare (Aplysia californica) [TaxId: 6500]
 d1uqwa_ :   (ILE243)  (PRO260)   [view usage] : c.94.1.1 |Periplasmic binding protein-like II |Periplasmic binding protein-like II |Phosphate binding protein-like |Hypothetical protein YliB |Escherichia coli [TaxId: 562]
 d3u5ik_ :     (ALA2)   (ARG17)   [view usage] : i.1.1.1 |Ribosome and ribosomal fragments |Ribosome and ribosomal fragments |Ribosome complexes |Eukaryotic, cytoplasmic (80S ribosome functional complex) |Saccharomyces cerevisiae [TaxId: 559292]
 d2wncd_ :   (MET126)  (GLY137)   [view usage] : b.96.1.0 |Nicotinic receptor ligand binding domain-like |Nicotinic receptor ligand binding domain-like |automated matches |automated matches |California sea hare (Aplysia californica) [TaxId: 6500]
 d2xkra_ :    (LEU40)   (PRO56)   [view usage] : a.104.1.0 |Cytochrome P450 |Cytochrome P450 |automated matches |automated matches |Mycobacterium tuberculosis [TaxId: 83332]
 d3evwc_ :   (ILE111)  (TRP127)   [view usage] : d.58.6.1 |Ferredoxin-like |Nucleoside diphosphate kinase, NDK |Nucleoside diphosphate kinase, NDK |automated matches |Acanthamoeba polyphaga mimivirus [TaxId: 212035]
 d1tw2b2 :   (HIS282)  (VAL305)   [view usage] : c.66.1.12 |S-adenosyl-L-methionine-dependent methyltransferases |S-adenosyl-L-methionine-dependent methyltransferases |Plant O-methyltransferase, C-terminal domain |Carminomycin 4-O-methyltransferase |Streptomyces peucetius [TaxId: 1950]
 d2p0ra_ :    (PRO64)   (VAL74)   [view usage] : d.3.1.3 |Cysteine proteinases |Cysteine proteinases |Calpain large subunit, catalytic domain (domain II) |Calpain large subunit, catalytic domain (domain II) |Human (Homo sapiens) [TaxId: 9606]
 d2hbja2 :   (PRO213)  (LYS230)   [view usage] : c.55.3.5 |Ribonuclease H-like motif |Ribonuclease H-like |DnaQ-like 3'-5' exonuclease |Exosome complex exonuclease RRP6 |Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
 d1ef0a3 :   (LYS378)  (CYS398)   [view usage] : d.95.2.2 |Homing endonuclease-like |Homing endonucleases |Intein endonuclease |VMA1-derived endonuclease (VDE) PI-SceI |Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
 d2b5xa1 :    (ASN63)   (PRO78)   [view usage] : c.47.1.10 |Thioredoxin fold |Thioredoxin-like |Glutathione peroxidase-like |thiol:disulfide oxidoreductase YkuV |Bacillus subtilis [TaxId: 1423]
 d2y9ha1 :    (GLY-1)   (ASN21)   [view usage] : d.58.53.0 |Ferredoxin-like |CRISPR-associated protein |automated matches |automated matches |Thermus thermophilus HB8 [TaxId: 300852]
 d2d4oa1 :     (MSE1)   (ARG16)   [view usage] : d.108.1.1 |Acyl-CoA N-acyltransferases (Nat) |Acyl-CoA N-acyltransferases (Nat) |N-acetyl transferase, NAT |Hypothetical protein TTHA1254 |Thermus thermophilus [TaxId: 274]
 d4lzia2 :    (ALA97)  (GLU128)   [view usage] : d.17.1.0 |Cystatin-like |Cystatin/monellin |automated matches |automated matches |Potato (Solanum tuberosum) [TaxId: 4113]
 d2kkia_ :   (LYS100)  (LEU109)   [view usage] : b.42.1.2 |beta-Trefoil |Cytokine |Interleukin-1 (IL-1) |automated matches |Human (Homo sapiens) [TaxId: 9606]
 d1a3za_ :     (THR6)   (ASP22)   [view usage] : b.6.1.1 |Cupredoxin-like |Cupredoxins |Plastocyanin/azurin-like |Rusticyanin |Thiobacillus ferrooxidans [TaxId: 920]
 d3iija_ :    (GLY73)   (HIS90)   [view usage] : c.37.1.1 |P-loop containing nucleoside triphosphate hydrolases |P-loop containing nucleoside triphosphate hydrolases |Nucleotide and nucleoside kinases |automated matches |Human (Homo sapiens) [TaxId: 9606]
 d3u5ey_ :   (THR107)  (LYS122)   [view usage] : i.1.1.1 |Ribosome and ribosomal fragments |Ribosome and ribosomal fragments |Ribosome complexes |Eukaryotic, cytoplasmic (80S ribosome functional complex) |Saccharomyces cerevisiae [TaxId: 559292]
 d7pcka_ :   (GLY129)  (PHE144)   [view usage] : d.3.1.1 |Cysteine proteinases |Cysteine proteinases |Papain-like |(Pro)cathepsin K |Human (Homo sapiens) [TaxId: 9606]
 d3gg7a_ :    (GLY86)   (TRP97)   [view usage] : c.1.9.0 |TIM beta/alpha-barrel |Metallo-dependent hydrolases |automated matches |automated matches |Deinococcus radiodurans [TaxId: 1299]
 d3exfa_ :   (GLN256)  (THR274)   [view usage] : c.36.1.11 |Thiamin diphosphate-binding fold (THDP-binding) |Thiamin diphosphate-binding fold (THDP-binding) |Branched-chain alpha-keto acid dehydrogenase PP module |E1-beta subunit of pyruvate dehydrogenase (PP module) |Human (Homo sapiens) [TaxId: 9606]
 d2r86a2 :   (ILE230)  (GLU258)   [view usage] : d.142.1.9 |ATP-grasp |Glutathione synthetase ATP-binding domain-like |PurP ATP-binding domain-like |5-formaminoimidazole-4-carboxamide ribonucleotide synthetase PurP |Pyrococcus furiosus [TaxId: 2261]
 d4pp0a_ :   (GLU135)  (GLU158)   [view usage] : c.94.1.0 |Periplasmic binding protein-like II |Periplasmic binding protein-like II |automated matches |automated matches |Agrobacterium tumefaciens [TaxId: 176299]
 d3lada2 :   (PRO159)  (VAL168)   [view usage] : c.3.1.5 |FAD/NAD(P)-binding domain |FAD/NAD(P)-binding domain |FAD/NAD-linked reductases, N-terminal and central domains |Dihydrolipoamide dehydrogenase |Azotobacter vinelandii [TaxId: 354]
 d2byna_ :   (MET126)  (GLY137)   [view usage] : b.96.1.0 |Nicotinic receptor ligand binding domain-like |Nicotinic receptor ligand binding domain-like |automated matches |automated matches |California sea hare (Aplysia californica) [TaxId: 6500]
 d3hjea1 :   (GLU192)  (HIS208)   [view usage] : c.1.8.0 |TIM beta/alpha-barrel |(Trans)glycosidases |automated matches |automated matches |Sulfolobus tokodaii [TaxId: 273063]
 d2gjpa2 :   (TYR203)  (ASN229)   [view usage] : c.1.8.1 |TIM beta/alpha-barrel |(Trans)glycosidases |Amylase, catalytic domain |automated matches |Bacillus halmapalus [TaxId: 79882]
 d1cr5a1 :    (THR26)   (ASN43)   [view usage] : b.52.2.3 |Double psi beta-barrel |ADC-like |Cdc48 N-terminal domain-like |N-terminal domain of NSF-N, NSF-Nn |Baker's yeast (Saccharomyces cerevisiae), sec18p [TaxId: 4932]
 d1sgvb1 :   (ALA237)  (GLY252)   [view usage] : b.122.1.1 |PUA domain-like |PUA domain-like |PUA domain |Pseudouridine synthase II TruB, C-terminal domain |Mycobacterium tuberculosis [TaxId: 1773]
 d3ogga1 :   (ASN930)  (SER946)   [view usage] : b.29.1.0 |Concanavalin A-like lectins/glucanases |Concanavalin A-like lectins/glucanases |automated matches |automated matches |Clostridium botulinum [TaxId: 1491]
 d3j39y_ :   (VAL107)  (LYS132)   [view usage] : i.1.1.1 |Ribosome and ribosomal fragments |Ribosome and ribosomal fragments |Ribosome complexes |Eukaryotic, cytoplasmic (80S ribosome functional complex) |Drosophila melanogaster [TaxId: 7227]
 d2ipla_ :   (VAL290)  (PHE306)   [view usage] : c.93.1.1 |Periplasmic binding protein-like I |Periplasmic binding protein-like I |L-arabinose binding protein-like |Galactose/glucose-binding protein |Escherichia coli [TaxId: 562]
 d3vtja_ :   (SER204)  (TRP218)   [view usage] : a.104.1.0 |Cytochrome P450 |Cytochrome P450 |automated matches |automated matches |Sphingomonas paucimobilis [TaxId: 13689]
 d1yela1 :     (THR4)   (SER21)   [view usage] : b.142.1.2 |DNA-binding pseudobarrel domain |DNA-binding pseudobarrel domain |B3 DNA binding domain |At1g16640 |Thale cress (Arabidopsis thaliana) [TaxId: 3702]
 d1pd6a_ :   (GLN251)  (ILE261)   [view usage] : b.1.1.4 |Immunoglobulin-like beta-sandwich |Immunoglobulin |I set domains |Cardiac myosin binding protein C, different domains |Human (Homo sapiens) [TaxId: 9606]
 d2v70a_ :   (PRO665)  (LYS681)   [view usage] : c.10.2.0 |Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) |L domain-like |automated matches |automated matches |Human (Homo sapiens) [TaxId: 9606]
 d1dpia1 :   (ASN329)  (ALA349)   [view usage] : c.55.3.5 |Ribonuclease H-like motif |Ribonuclease H-like |DnaQ-like 3'-5' exonuclease |Exonuclease domain of prokaryotic DNA polymerase |Escherichia coli [TaxId: 562]
 d1xkvb2 :    (LYS57)   (ILE69)   [view usage] : c.109.1.1 |PEP carboxykinase N-terminal domain |PEP carboxykinase N-terminal domain |PEP carboxykinase N-terminal domain |Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxaloacetate carboxy-lyase) |Thermus thermophilus [TaxId: 274]
 d2paka1 :   (ASP118)  (GLU136)   [view usage] : b.82.1.1 |Double-stranded beta-helix |RmlC-like cupins |dTDP-sugar isomerase |dTDP-6-deoxy-3,4-keto-hexulose isomerase FdtA |Aneurinibacillus thermoaerophilus [TaxId: 143495]
 d3siod_ :   (MET126)  (GLY137)   [view usage] : b.96.1.0 |Nicotinic receptor ligand binding domain-like |Nicotinic receptor ligand binding domain-like |automated matches |automated matches |California sea hare (Aplysia californica) [TaxId: 6500]
 d3q46a_ :   (LYS146)  (GLU178)   [view usage] : b.40.5.1 |OB-fold |Inorganic pyrophosphatase |Inorganic pyrophosphatase |automated matches |Thermococcus thioreducens [TaxId: 277988]
 d1rj9a2 :   (ASP288)  (GLU303)   [view usage] : c.37.1.10 |P-loop containing nucleoside triphosphate hydrolases |P-loop containing nucleoside triphosphate hydrolases |Nitrogenase iron protein-like |GTPase domain of the signal recognition particle receptor FtsY |Thermus aquaticus [TaxId: 271]
 d1kn3a_ :   (VAL164)  (SER185)   [view usage] : b.17.1.1 |PEBP-like |PEBP-like |Phosphatidylethanolamine binding protein |Phosphatidylethanolamine binding protein, PEBP |Mouse (Mus musculus), PEBP-2 [TaxId: 10090]
 d2cwea1 :     (LYS4)   (MET17)   [view usage] : a.4.5.58 |DNA/RNA-binding 3-helical bundle |"Winged helix" DNA-binding domain |Hypothetical protein PH1932 |Hypothetical protein PH1932 |Pyrococcus horikoshii [TaxId: 53953]
 d4e2aa_ :     (GLN3)   (PHE29)   [view usage] : d.108.1.0 |Acyl-CoA N-acyltransferases (Nat) |Acyl-CoA N-acyltransferases (Nat) |automated matches |automated matches |Streptococcus mutans [TaxId: 1309]
 d3cu7af :  (ILE1645) (LEU1673)   [view usage] : b.40.3.3 |OB-fold |TIMP-like |Netrin-like domain (NTR/C345C module) |Complement C5 domain |Human (Homo sapiens) [TaxId: 9606]
 d1pt6b_ :   (ASP144)  (ASP159)   [view usage] : c.62.1.1 |vWA-like |vWA-like |Integrin A (or I) domain |Integrin alpha1-beta1 |Human (Homo sapiens) [TaxId: 9606]
 d3qyja_ :   (PRO233)  (LYS247)   [view usage] : c.69.1.0 |alpha/beta-Hydrolases |alpha/beta-Hydrolases |automated matches |automated matches |Nostoc sp. [TaxId: 103690]
 d2wl9c2 :   (PHE283)  (PRO297)   [view usage] : d.32.1.0 |Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase |Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase |automated matches |automated matches |Rhodococcus sp. [TaxId: 186196]
 d2dpwa1 :   (GLY221)  (VAL231)   [view usage] : c.68.1.19 |Nucleotide-diphospho-sugar transferases |Nucleotide-diphospho-sugar transferases |TTHA0179-like |Uncharacterized protein TTHA0179 |Thermus thermophilus [TaxId: 274]
 d2q78a1 :     (GLY9)   (HIS34)   [view usage] : d.38.1.7 |Thioesterase/thiol ester dehydrase-isomerase |Thioesterase/thiol ester dehydrase-isomerase |TTHA0967-like |Uncharacterized protein TM0581 |Thermotoga maritima [TaxId: 2336]
 d1mmta_ :   (PRO119)  (GLN134)   [view usage] : d.178.1.1 |Aromatic aminoacid monoxygenases, catalytic and oligomerization domains |Aromatic aminoacid monoxygenases, catalytic and oligomerization domains |Aromatic aminoacid monoxygenases, catalytic and oligomerization domains |Phenylalanine hydroxylase, PAH |Human (Homo sapiens) [TaxId: 9606]
 d2vzma_ :    (VAL52)   (ASP67)   [view usage] : a.104.1.0 |Cytochrome P450 |Cytochrome P450 |automated matches |automated matches |Streptomyces venezuelae [TaxId: 54571]
 d1kful1 :   (GLY635)  (ALA651)   [view usage] : a.39.1.8 |EF Hand-like |EF-hand |Penta-EF-hand proteins |Calpain large subunit, C-terminal domain (domain IV) |Human (Homo sapiens), M-type [TaxId: 9606]
 d4mfga_ :   (PRO134)  (TYR165)   [view usage] : b.81.1.0 |Single-stranded left-handed beta-helix |Trimeric LpxA-like enzymes |automated matches |automated matches |Clostridium difficile [TaxId: 272563]
 d1zboa1 :    (ARG20)   (ASP38)   [view usage] : b.122.1.10 |PUA domain-like |PUA domain-like |LON domain-like |Hypothetical protein BPP1347 |Bordetella parapertussis [TaxId: 519]
 d1xfla_ :     (GLY6)   (GLU26)   [view usage] : c.47.1.1 |Thioredoxin fold |Thioredoxin-like |Thioltransferase |Thioredoxin |Thale cress (Arabidopsis thaliana) [TaxId: 3702]
 d1a40a_ :     (LEU4)   (PRO14)   [view usage] : c.94.1.1 |Periplasmic binding protein-like II |Periplasmic binding protein-like II |Phosphate binding protein-like |Phosphate-binding protein |Escherichia coli [TaxId: 562]
 d2cc3a1 :   (MET187)  (PRO214)   [view usage] : d.17.4.26 |Cystatin-like |NTF2-like |VirB8-like |Type IV secretion system protein VirB8 |Agrobacterium tumefaciens [TaxId: 358]
 d1e8ca2 :   (ASP469)  (LEU490)   [view usage] : c.59.1.1 |MurD-like peptide ligases, peptide-binding domain |MurD-like peptide ligases, peptide-binding domain |MurCDEF C-terminal domain |UDP-N-acetylmuramyl tripeptide synthetase MurE |Escherichia coli [TaxId: 562]
 d1ayla2 :    (LYS70)   (PHE82)   [view usage] : c.109.1.1 |PEP carboxykinase N-terminal domain |PEP carboxykinase N-terminal domain |PEP carboxykinase N-terminal domain |Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxaloacetate carboxy-lyase) |Escherichia coli [TaxId: 562]
 d3vnpa_ :   (PRO136)  (GLN170)   [view usage] : b.81.1.5 |Single-stranded left-handed beta-helix |Trimeric LpxA-like enzymes |gamma-carbonic anhydrase-like |automated matches |Geobacillus kaustophilus [TaxId: 1462]
 d1mjia_ :    (LEU90)  (ILE114)   [view usage] : d.77.1.1 |RL5-like |RL5-like |Ribosomal protein L5 |Ribosomal protein L5 |Thermus thermophilus [TaxId: 274]
 d4kuba_ :     (HIS0)   (LEU13)   [view usage] : d.108.1.1 |Acyl-CoA N-acyltransferases (Nat) |Acyl-CoA N-acyltransferases (Nat) |N-acetyl transferase, NAT |Putative acetyltransferase PA4794 |Pseudomonas aeruginosa [TaxId: 287]
 d3j6vg_ :    (PRO78)   (MET99)   [view usage] : i.1.1.3 |Ribosome and ribosomal fragments |Ribosome and ribosomal fragments |Small subunit |Eukaryotic, mitochondrial (28S subunit) |Cow (Bos taurus) [TaxId: 9913]
 d1gz0h2 :     (GLU3)   (ARG17)   [view usage] : d.79.3.3 |Bacillus chorismate mutase-like |L30e-like |RNA 2'-O ribose methyltransferase substrate binding domain |RlmB, N-terminal domain |Escherichia coli [TaxId: 562]
 d1gnya_ :   (ASP146)  (SER162)   [view usage] : b.18.1.11 |Galactose-binding domain-like |Galactose-binding domain-like |CBM15 |Xylan-binding module from xylanase 10c |Pseudomonas cellulosa (Cellvibrio japonicus) [TaxId: 155077]
 d1tm2a_ :   (ARG327)  (TYR338)   [view usage] : c.93.1.1 |Periplasmic binding protein-like I |Periplasmic binding protein-like I |L-arabinose binding protein-like |AI-2 receptor LsrB |Salmonella typhi [TaxId: 90370]
 d1z6ka_ :   (ASP106)  (CYS119)   [view usage] : c.1.12.5 |TIM beta/alpha-barrel |Phosphoenolpyruvate/pyruvate domain |HpcH/HpaI aldolase |Citrate lyase, beta subunit |Mycobacterium tuberculosis [TaxId: 1773]
 d3kwby_ :  (GLY2129) (PHE2144)   [view usage] : d.3.1.1 |Cysteine proteinases |Cysteine proteinases |Papain-like |(Pro)cathepsin K |Human (Homo sapiens) [TaxId: 9606]
 d2vyoa_ :   (GLY206)  (GLN217)   [view usage] : c.6.2.0 |7-stranded beta/alpha barrel |Glycoside hydrolase/deacetylase |automated matches |automated matches |Encephalitozoon cuniculi [TaxId: 284813]
 d1qsta_ :    (LEU49)   (GLN76)   [view usage] : d.108.1.1 |Acyl-CoA N-acyltransferases (Nat) |Acyl-CoA N-acyltransferases (Nat) |N-acetyl transferase, NAT |Catalytic domain of GCN5 histone acetyltransferase |Tetrahymena thermophila [TaxId: 5911]
 d1q8ka2 :   (GLU273)  (MET289)   [view usage] : d.58.51.1 |Ferredoxin-like |eIF-2-alpha, C-terminal domain |eIF-2-alpha, C-terminal domain |eIF-2-alpha, C-terminal domain |Human (Homo sapiens) [TaxId: 9606]
 d2ij5d_ :    (ALA42)   (ASP57)   [view usage] : a.104.1.1 |Cytochrome P450 |Cytochrome P450 |Cytochrome P450 |Cyp121 monooxygenase (P450 Mt2) |Mycobacterium tuberculosis [TaxId: 1773]
 d1ezma_ :    (PRO59)   (GLY92)   [view usage] : d.92.1.2 |Zincin-like |Metalloproteases ("zincins"), catalytic domain |Thermolysin-like |Elastase |Pseudomonas aeruginosa [TaxId: 287]
 d1kija2 :     (ALA9)   (ARG22)   [view usage] : d.122.1.2 |ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase |ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase |DNA gyrase/MutL, N-terminal domain |DNA gyrase B |Thermus thermophilus [TaxId: 274]
 d2nyva_ :     (ARG4)   (ILE15)   [view usage] : c.108.1.0 |HAD-like |HAD-like |automated matches |automated matches |Aquifex aeolicus [TaxId: 63363]
 d1gz0a2 :     (GLU3)   (ARG17)   [view usage] : d.79.3.3 |Bacillus chorismate mutase-like |L30e-like |RNA 2'-O ribose methyltransferase substrate binding domain |RlmB, N-terminal domain |Escherichia coli [TaxId: 562]
 d3voma_ :   (GLY207)  (THR227)   [view usage] : c.67.1.0 |PLP-dependent transferase-like |PLP-dependent transferases |automated matches |automated matches |Mycobacterium tuberculosis [TaxId: 83332]
 d2iqya_ :   (VAL164)  (GLY186)   [view usage] : b.17.1.1 |PEBP-like |PEBP-like |Phosphatidylethanolamine binding protein |automated matches |Norway rat (Rattus norvegicus) [TaxId: 10116]
 d1vd1a_ :    (ASP35)   (ASN75)   [view usage] : d.124.1.1 |Ribonuclease Rh-like |Ribonuclease Rh-like |Ribonuclease Rh-like |automated matches |Nicotiana glutinosa [TaxId: 35889]
 d2zbza_ :    (PHE16)   (THR36)   [view usage] : a.104.1.0 |Cytochrome P450 |Cytochrome P450 |automated matches |automated matches |Streptomyces griseolus [TaxId: 1909]
 d1dj3a_ :   (GLU370)  (VAL385)   [view usage] : c.37.1.10 |P-loop containing nucleoside triphosphate hydrolases |P-loop containing nucleoside triphosphate hydrolases |Nitrogenase iron protein-like |Adenylosuccinate synthetase, PurA |Wheat (Triticum aestivum) [TaxId: 4565]
 d2etla1 :    (CYS47)   (LYS71)   [view usage] : d.3.1.6 |Cysteine proteinases |Cysteine proteinases |Ubiquitin carboxyl-terminal hydrolase UCH-L |Ubiquitin carboxyl-terminal hydrolase isozyme l1 |Human (Homo sapiens) [TaxId: 9606]
 d4erfa_ :    (PRO89)  (LEU107)   [view usage] : a.42.1.1 |SWIB/MDM2 domain |SWIB/MDM2 domain |SWIB/MDM2 domain |MDM2 |Human (Homo sapiens) [TaxId: 9606]
 d4ek2a_ :   (VAL116)  (PHE132)   [view usage] : d.58.6.1 |Ferredoxin-like |Nucleoside diphosphate kinase, NDK |Nucleoside diphosphate kinase, NDK |automated matches |Burkholderia thailandensis [TaxId: 271848]
 d3o6va_ :   (THR115)  (ALA128)   [view usage] : c.56.2.1 |Phosphorylase/hydrolase-like |Purine and uridine phosphorylases |Purine and uridine phosphorylases |automated matches |Vibrio cholerae [TaxId: 243277]
 d4wjka_ :   (LEU217)  (SER229)   [view usage] : b.69.8.0 |7-bladed beta-propeller |Integrin alpha N-terminal domain |automated matches |automated matches |Human (Homo sapiens) [TaxId: 9606]
 d1ulya_ :     (LYS4)   (MSE17)   [view usage] : a.4.5.58 |DNA/RNA-binding 3-helical bundle |"Winged helix" DNA-binding domain |Hypothetical protein PH1932 |Hypothetical protein PH1932 |Pyrococcus horikoshii [TaxId: 53953]
 d2cala_ :  (THR1006) (ASP1022)   [view usage] : b.6.1.1 |Cupredoxin-like |Cupredoxins |Plastocyanin/azurin-like |automated matches |Thiobacillus ferrooxidans [TaxId: 920]
 d1gmya_ :   (GLU171)  (TYR183)   [view usage] : d.3.1.1 |Cysteine proteinases |Cysteine proteinases |Papain-like |(Pro)cathepsin B |Human (Homo sapiens) [TaxId: 9606]
 d2whwa_ :    (VAL52)   (ALA66)   [view usage] : a.104.1.0 |Cytochrome P450 |Cytochrome P450 |automated matches |automated matches |Streptomyces venezuelae [TaxId: 54571]
 d2py7x2 :    (LYS70)   (PHE82)   [view usage] : c.109.1.1 |PEP carboxykinase N-terminal domain |PEP carboxykinase N-terminal domain |PEP carboxykinase N-terminal domain |Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxaloacetate carboxy-lyase) |Escherichia coli [TaxId: 562]
 d2k5ga1 :    (LEU70)   (ARG84)   [view usage] : d.129.3.5 |TBP-like |Bet v1-like |AHSA1 domain |Uncharacterized protein BPP1335 |Bordetella parapertussis [TaxId: 519]
 d1yfzb_ :    (SER63)   (SER79)   [view usage] : c.61.1.1 |PRTase-like |PRTase-like |Phosphoribosyltransferases (PRTases) |Xanthine-guanine PRTase (XPRTase) |Thermoanaerobacter tengcongensis [TaxId: 119072]
 d3hiqb_ :    (LEU39)   (LEU52)   [view usage] : d.165.1.0 |Ribosome inactivating proteins (RIP) |Ribosome inactivating proteins (RIP) |automated matches |automated matches |Common soapwort (Saponaria officinalis) [TaxId: 3572]
 d2fwea_ :   (VAL485)  (ASN506)   [view usage] : c.47.1.1 |Thioredoxin fold |Thioredoxin-like |Thioltransferase |Thiol:disulfide interchange protein DsbD, C-terminal domain (DsbD-gamma) |Escherichia coli [TaxId: 562]

List of distinct SCOP folds where this concept is used (in one or more of its domains):
   c.1,    c.10,    b.82,    c.67,    c.69,    b.81,    c.94,   a.104,    d.68,     c.2,     c.6,    d.58,    b.69,     i.1,    c.68,   c.108,    b.29,    c.82,    b.47,    c.56,  
c.66, d.92, c.93, d.165, d.129, d.122, c.23, b.40, c.37, c.36, d.178, c.47, c.55, d.166, b.18, d.169, d.3, a.96, c.31, c.62,
b.6, b.85, d.32, b.122, b.1, e.23, a.123, d.108, d.20, b.96, b.42, d.17, e.13, c.109, d.38, d.124, c.50, b.62, b.52, f.24,
c.61, d.79, c.24, c.59, d.142, b.34, a.4, d.90, a.39, c.3, d.287, d.128, c.91, e.43, d.16, d.95, i.8, d.218, d.26, a.42,
b.17, d.136, g.17, d.77, d.156, d.78, b.86, b.111, d.100, b.142